Wall clock time and date at job start Tue Mar 31 2020 03:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30498 * 125.65200 * 2 1 4 4 C 1.34126 * 109.25597 * 179.97438 * 3 2 1 5 5 N 1.48027 * 125.99166 * 179.97438 * 4 3 2 6 6 O 1.21804 * 119.99678 * 0.02968 * 5 4 3 7 7 O 1.21800 * 120.00382 * 180.02562 * 5 4 3 8 8 C 1.34671 * 108.02450 * 359.73443 * 4 3 2 9 9 N 1.35045 * 125.64795 * 179.97438 * 2 1 3 10 10 C 1.46501 * 126.40005 * 0.02562 * 9 2 1 11 11 C 1.53003 * 109.47102 * 84.99905 * 10 9 2 12 12 C 1.50698 * 109.47272 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99871 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00287 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00388 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.47378 * 35.00208 * 15 14 12 17 17 C 1.53009 * 109.47194 * 275.00617 * 15 14 12 18 18 C 1.50702 * 109.47571 * 155.00548 * 15 14 12 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 15 14 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 15 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 15 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 H 1.08996 * 109.47076 * 269.99525 * 1 2 3 27 27 H 1.08997 * 109.47317 * 30.00138 * 1 2 3 28 28 H 1.09001 * 109.47034 * 149.99760 * 1 2 3 29 29 H 1.07999 * 126.59643 * 180.26249 * 8 4 3 30 30 H 1.09000 * 109.47319 * 325.00381 * 10 9 2 31 31 H 1.08997 * 109.47519 * 204.99566 * 10 9 2 32 32 H 1.09000 * 109.47327 * 59.99751 * 11 10 9 33 33 H 1.09007 * 109.47157 * 300.00169 * 11 10 9 34 34 H 0.97008 * 119.99537 * 0.02562 * 14 12 11 35 35 H 1.09001 * 109.46592 * 299.99497 * 17 15 14 36 36 H 1.08990 * 109.47127 * 59.99623 * 17 15 14 37 37 H 1.08994 * 109.46846 * 179.97438 * 17 15 14 38 38 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 0.0006 5 7 4.7269 1.5852 0.0002 6 8 4.5655 2.7925 -0.0001 7 8 5.8532 1.1214 0.0003 8 6 3.5926 -0.6644 0.0069 9 7 2.2940 -1.0974 0.0005 10 6 1.8425 -2.4911 0.0006 11 6 1.5662 -2.9378 -1.4365 12 6 1.1011 -4.3712 -1.4364 13 8 1.0001 -4.9758 -0.3899 14 7 0.7964 -4.9809 -2.5990 15 6 0.3438 -6.3742 -2.5989 16 1 -0.2575 -6.5609 -1.7091 17 6 1.5582 -7.3050 -2.5983 18 6 -0.4867 -6.6328 -3.8296 19 1 -0.6603 -5.8385 -4.5405 20 6 -1.0256 -7.8830 -4.0474 21 7 -1.7549 -8.1072 -5.1186 22 14 -0.7260 -9.2566 -2.8174 23 1 0.5029 -9.9999 -3.1952 24 1 -0.5568 -8.6777 -1.4604 25 1 -1.8856 -10.1841 -2.8188 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 4.4776 -1.2833 0.0129 30 1 0.9294 -2.5772 0.5896 31 1 2.6163 -3.1238 0.4352 32 1 2.4792 -2.8517 -2.0257 33 1 0.7923 -2.3051 -1.8712 34 1 0.8769 -4.4972 -3.4360 35 1 2.1593 -7.1184 -3.4881 36 1 2.1588 -7.1180 -1.7082 37 1 1.2213 -8.3416 -2.5977 38 1 -2.1374 -8.9856 -5.2699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338077899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:53 Heat of formation + Delta-G solvation = 0.441553 kcal Electronic energy + Delta-G solvation = -23122.486564 eV Core-core repulsion = 19389.927444 eV Total energy + Delta-G solvation = -3732.559119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.11078 -42.84664 -40.74081 -37.67730 -37.07125 -36.15659 -34.41561 -33.33138 -32.56778 -31.12545 -29.49991 -27.31566 -27.14921 -25.50319 -23.00435 -22.85020 -21.50034 -21.20686 -20.09414 -19.57071 -19.20034 -18.76897 -18.05007 -17.58814 -16.96220 -16.86900 -16.61262 -15.95955 -15.54558 -15.14776 -14.83466 -14.74664 -14.29766 -14.11709 -13.96550 -13.64499 -13.48489 -13.28976 -13.16130 -12.80052 -12.77616 -12.55365 -12.44344 -12.33880 -12.14284 -11.67418 -11.62356 -11.42843 -11.27266 -10.88819 -10.79320 -10.20505 -9.89425 -8.38366 -6.44713 -0.94802 0.06853 0.49291 1.21844 1.28514 1.36755 1.41209 1.44791 1.69906 2.25751 2.45220 2.98591 3.00858 3.25000 3.50814 3.57311 3.69075 3.94801 4.20582 4.30134 4.34950 4.47026 4.58250 4.59721 4.62756 4.68062 4.72389 4.76445 5.01179 5.02064 5.25495 5.32847 5.43439 5.54696 5.62788 6.11018 6.11447 6.58593 6.63956 6.83320 7.18457 7.40219 8.76823 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.032218 B = 0.002717 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.881804 B =10301.537040 C =10549.093725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.259 3.741 3 N -0.493 5.493 4 C 0.005 3.995 5 N 0.069 4.931 6 O -0.200 6.200 7 O -0.145 6.145 8 C 0.093 3.907 9 N -0.433 5.433 10 C 0.118 3.882 11 C -0.147 4.147 12 C 0.512 3.488 13 O -0.589 6.589 14 N -0.700 5.700 15 C 0.242 3.758 16 H 0.028 0.972 17 C -0.157 4.157 18 C -0.534 4.534 19 H 0.057 0.943 20 C 0.027 3.973 21 N -0.936 5.936 22 Si 0.939 3.061 23 H -0.263 1.263 24 H -0.256 1.256 25 H -0.297 1.297 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.240 0.760 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.408 0.592 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.523 11.710 10.330 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.007 4.007 3 N -0.214 5.214 4 C -0.203 4.203 5 N 0.585 4.415 6 O -0.406 6.406 7 O -0.363 6.363 8 C -0.051 4.051 9 N -0.113 5.113 10 C -0.002 4.002 11 C -0.188 4.188 12 C 0.298 3.702 13 O -0.470 6.470 14 N -0.349 5.349 15 C 0.137 3.863 16 H 0.046 0.954 17 C -0.215 4.215 18 C -0.572 4.572 19 H 0.075 0.925 20 C -0.173 4.173 21 N -0.575 5.575 22 Si 0.767 3.233 23 H -0.189 1.189 24 H -0.180 1.180 25 H -0.224 1.224 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.256 0.744 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.244 0.756 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.456 11.486 10.945 17.129 hybrid contribution 0.573 -0.988 -0.373 1.201 sum 7.029 10.499 10.572 16.474 Atomic orbital electron populations 1.20658 0.80418 1.06441 1.06169 1.24148 0.97459 0.78847 1.00237 1.69659 0.99406 1.31077 1.21277 1.20691 0.87330 0.88173 1.24142 1.42524 1.01146 1.00976 0.96895 1.94584 1.92892 0.97350 1.55743 1.94506 1.08367 1.80404 1.53006 1.22925 0.90438 0.92713 0.99012 1.45985 1.04760 1.09492 1.51082 1.22027 1.05110 0.75287 0.97779 1.21944 1.06056 0.92428 0.98335 1.20765 0.76975 0.89117 0.83302 1.90695 1.55677 1.68303 1.32372 1.46046 1.65592 1.13913 1.09337 1.18745 0.91968 0.79469 0.96090 0.95401 1.22360 0.99260 0.98753 1.01154 1.21298 1.31661 0.97503 1.06733 0.92520 1.25587 0.94230 1.00888 0.96587 1.69981 1.35010 1.23988 1.28479 0.86001 0.77129 0.79478 0.80715 1.18899 1.18042 1.22447 0.87389 0.87831 0.87556 0.74382 0.85802 0.85733 0.85938 0.85997 0.75615 0.91833 0.93009 0.94408 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.04 71.24 0.71 0.05 16 2 C 0.26 4.05 7.90 138.13 1.09 5.14 16 3 N -0.49 -11.73 11.23 -178.84 -2.01 -13.74 16 4 C 0.01 0.12 8.02 128.16 1.03 1.15 16 5 N 0.07 1.91 4.45 -50.70 -0.23 1.69 16 6 O -0.20 -6.41 19.24 18.88 0.36 -6.05 16 7 O -0.14 -3.71 19.02 18.89 0.36 -3.35 16 8 C 0.09 1.35 11.25 83.09 0.93 2.28 16 9 N -0.43 -5.35 2.75 -514.28 -1.42 -6.77 16 10 C 0.12 1.22 4.97 86.38 0.43 1.65 16 11 C -0.15 -1.83 6.02 29.85 0.18 -1.65 16 12 C 0.51 12.77 7.79 87.66 0.68 13.45 16 13 O -0.59 -19.02 15.64 -3.03 -0.05 -19.06 16 14 N -0.70 -21.34 5.07 -446.09 -2.26 -23.61 16 15 C 0.24 9.96 2.15 44.25 0.10 10.06 16 16 H 0.03 1.29 6.63 -2.39 -0.02 1.27 16 17 C -0.16 -5.98 8.96 71.99 0.65 -5.33 16 18 C -0.53 -26.62 9.31 25.60 0.24 -26.38 16 19 H 0.06 3.02 7.98 -2.91 -0.02 3.00 16 20 C 0.03 1.42 5.45 84.65 0.46 1.88 16 21 N -0.94 -53.63 13.96 21.45 0.30 -53.33 16 22 Si 0.94 41.74 24.37 68.60 1.67 43.41 16 23 H -0.26 -11.07 6.88 99.48 0.68 -10.38 16 24 H -0.26 -11.01 6.52 99.48 0.65 -10.36 16 25 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 26 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.11 0.54 7.36 -2.39 -0.02 0.52 16 29 H 0.24 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.12 1.20 7.87 -2.39 -0.02 1.18 16 31 H 0.12 1.16 8.09 -2.39 -0.02 1.14 16 32 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.12 1.13 7.68 -2.38 -0.02 1.11 16 34 H 0.41 10.68 8.54 -92.70 -0.79 9.88 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.51 3.28 -2.39 -0.01 1.51 16 38 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -73.64 332.61 3.47 -70.16 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.24 Total: 8.36 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.50 Total: 2.29 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -5.61 Total: -95.76 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: 0.67 Total: -28.46 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.67 Total: 43.41 kcal Total: -73.64 3.47 -70.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338077899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.606 kcal (2) G-P(sol) polarization free energy of solvation -73.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds