Wall clock time and date at job start Tue Mar 31 2020 03:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34227 * 117.00403 * 2 1 4 4 O 1.20832 * 119.99686 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00234 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.26110 * 59.50445 * 5 3 2 7 7 C 1.52885 * 109.26523 * 300.00150 * 5 3 2 8 8 C 1.53660 * 109.69472 * 177.45858 * 7 5 3 9 9 N 1.46512 * 107.36023 * 51.05385 * 8 7 5 10 10 C 1.33519 * 129.69935 * 126.58190 * 9 8 7 11 11 O 1.21534 * 124.00424 * 10.79371 * 10 9 8 12 12 N 1.34165 * 111.98876 * 190.77997 * 10 9 8 13 13 C 1.46504 * 124.17622 * 176.54142 * 12 10 9 14 14 C 1.50704 * 109.46802 * 90.02401 * 13 12 10 15 15 H 1.08002 * 120.00218 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00104 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00368 * 180.02562 * 16 14 13 18 18 Si 1.86811 * 119.99783 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47078 * 89.99918 * 18 16 14 20 20 H 1.48498 * 109.46798 * 209.99969 * 18 16 14 21 21 H 1.48495 * 109.47005 * 329.99773 * 18 16 14 22 22 C 1.35004 * 111.64525 * 356.56705 * 12 10 9 23 23 O 1.21240 * 127.18119 * 177.39351 * 22 12 10 24 24 C 1.47896 * 123.29595 * 309.79861 * 9 8 7 25 25 H 1.09000 * 111.64511 * 288.35849 * 24 9 8 26 26 C 1.53163 * 107.16627 * 51.62254 * 24 9 8 27 27 H 1.08997 * 109.47443 * 299.99785 * 1 2 3 28 28 H 1.09007 * 109.46874 * 59.99959 * 1 2 3 29 29 H 1.09003 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.43640 * 57.38855 * 7 5 3 31 31 H 1.08998 * 109.43492 * 297.52431 * 7 5 3 32 32 H 1.09002 * 109.87569 * 291.59234 * 8 7 5 33 33 H 1.08998 * 109.87700 * 170.52250 * 8 7 5 34 34 H 1.08992 * 109.47146 * 210.02275 * 13 12 10 35 35 H 1.09005 * 109.46997 * 330.02856 * 13 12 10 36 36 H 0.97003 * 120.00449 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.60013 * 66.60593 * 26 24 9 38 38 H 1.09004 * 109.59860 * 187.07642 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9531 0.7719 -0.8858 7 6 4.1073 0.5807 1.2508 8 6 5.6437 0.5996 1.2297 9 7 6.0606 1.9827 0.9852 10 6 6.8996 2.7558 1.6788 11 8 7.6209 2.3489 2.5683 12 7 6.8522 4.0351 1.2772 13 6 7.6075 5.1228 1.9038 14 6 8.9483 5.2571 1.2288 15 1 9.2112 4.5983 0.4143 16 6 9.8388 6.2215 1.6503 17 7 11.0086 6.3390 1.0610 18 14 9.3837 7.3614 3.0586 19 1 9.8141 6.7558 4.3445 20 1 10.0625 8.6694 2.8757 21 1 7.9129 7.5650 3.0751 22 6 6.0221 4.1962 0.2249 23 8 5.7369 5.2352 -0.3310 24 6 5.5223 2.8103 -0.1159 25 1 5.8922 2.4786 -1.0861 26 6 3.9947 2.7453 -0.0252 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.7576 -0.4514 1.2727 31 1 3.7504 1.1028 2.1386 32 1 6.0113 -0.0450 0.4312 33 1 6.0317 0.2596 2.1899 34 1 7.0539 6.0560 1.8007 35 1 7.7536 4.9017 2.9611 36 1 11.6353 7.0173 1.3578 37 1 3.6613 3.2393 0.8874 38 1 3.5556 3.2388 -0.8922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349165353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:17 Heat of formation + Delta-G solvation = -145.946898 kcal Electronic energy + Delta-G solvation = -24510.202722 eV Core-core repulsion = 20739.002971 eV Total energy + Delta-G solvation = -3771.199750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.51765 -41.60609 -39.63004 -38.73777 -37.48486 -36.82737 -35.29006 -34.05128 -32.71464 -30.34358 -28.98399 -27.37827 -25.85315 -24.33515 -23.83486 -22.43081 -21.66158 -20.71419 -19.36272 -18.71158 -18.30951 -18.11929 -17.70370 -17.36965 -17.11166 -16.59657 -16.25131 -15.95663 -15.69807 -15.35558 -14.89056 -14.76371 -14.65801 -14.59261 -14.00259 -13.98921 -13.78587 -13.39061 -13.33254 -12.96947 -12.70512 -12.60251 -12.33443 -12.11575 -11.97772 -11.86257 -11.76346 -11.66786 -11.48002 -11.11093 -10.89712 -10.61307 -9.96074 -8.42161 -6.50942 0.62926 1.12293 1.18204 1.32226 1.34333 1.43639 1.71488 1.99585 2.14518 2.25559 2.89175 2.95436 3.37588 3.53477 3.64112 3.82916 3.96097 4.07536 4.25912 4.36210 4.37465 4.40672 4.50285 4.50606 4.66261 4.68742 4.73331 4.77424 4.87443 4.92129 5.13858 5.17959 5.24704 5.38702 5.55891 6.03513 6.23036 6.44285 6.48179 6.70422 7.06637 7.17458 8.74536 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.031037 B = 0.003857 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.943027 B = 7256.999651 C = 7623.707176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.471 3.529 4 O -0.540 6.540 5 C -0.069 4.069 6 H 0.156 0.844 7 C -0.120 4.120 8 C 0.147 3.853 9 N -0.616 5.616 10 C 0.699 3.301 11 O -0.580 6.580 12 N -0.575 5.575 13 C 0.230 3.770 14 C -0.550 4.550 15 H 0.032 0.968 16 C 0.019 3.981 17 N -0.936 5.936 18 Si 0.947 3.053 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.246 1.246 22 C 0.514 3.486 23 O -0.504 6.504 24 C 0.108 3.892 25 H 0.170 0.830 26 C -0.093 4.093 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.273 0.727 37 H 0.063 0.937 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.734 -17.686 -2.438 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.315 3.685 4 O -0.429 6.429 5 C -0.088 4.088 6 H 0.174 0.826 7 C -0.158 4.158 8 C 0.028 3.972 9 N -0.355 5.355 10 C 0.402 3.598 11 O -0.457 6.457 12 N -0.318 5.318 13 C 0.109 3.891 14 C -0.588 4.588 15 H 0.050 0.950 16 C -0.180 4.180 17 N -0.575 5.575 18 Si 0.768 3.232 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.170 1.170 22 C 0.302 3.698 23 O -0.376 6.376 24 C 0.001 3.999 25 H 0.187 0.813 26 C -0.131 4.131 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.537 -17.063 -2.180 27.564 hybrid contribution 0.367 1.224 0.494 1.370 sum -21.170 -15.839 -1.687 26.493 Atomic orbital electron populations 1.23540 0.74992 1.05715 1.02317 1.86483 1.24664 1.32251 1.83513 1.23890 0.92227 0.81255 0.71135 1.90710 1.67981 1.37670 1.46555 1.21027 0.86488 0.96797 1.04499 0.82609 1.22057 0.94375 1.03842 0.95549 1.21953 0.93653 0.76524 1.05040 1.47877 1.44554 1.14356 1.28756 1.15826 0.81166 0.80785 0.82043 1.90896 1.44071 1.76185 1.34541 1.46716 1.42144 1.10225 1.32724 1.19535 0.90603 0.84901 0.94070 1.21300 1.00115 1.18556 1.18869 0.95000 1.25800 0.94218 0.98484 0.99542 1.70012 1.08654 1.35491 1.43324 0.85731 0.80167 0.78295 0.78989 1.18461 1.19523 1.16983 1.21416 0.77615 0.92156 0.78571 1.90724 1.59243 1.33585 1.54053 1.22489 0.96699 0.85828 0.94862 0.81337 1.21581 0.89823 0.96652 1.05091 0.92405 0.92092 0.84888 0.85075 0.91902 0.86405 0.88493 0.93146 0.93584 0.91762 0.91822 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -4.51 10.40 -51.39 -0.53 -5.04 16 3 C 0.47 7.77 7.24 71.24 0.52 8.28 16 4 O -0.54 -13.15 15.69 21.95 0.34 -12.80 16 5 C -0.07 -0.86 2.50 -11.51 -0.03 -0.89 16 6 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 7 C -0.12 -1.30 5.30 30.78 0.16 -1.14 16 8 C 0.15 2.21 7.01 86.60 0.61 2.82 16 9 N -0.62 -16.26 3.02 -816.61 -2.47 -18.72 16 10 C 0.70 28.03 8.34 179.64 1.50 29.53 16 11 O -0.58 -27.55 17.32 -3.82 -0.07 -27.62 16 12 N -0.58 -25.53 2.60 -777.70 -2.02 -27.56 16 13 C 0.23 11.83 4.53 85.63 0.39 12.22 16 14 C -0.55 -33.50 9.94 25.60 0.25 -33.25 16 15 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 16 C 0.02 1.15 5.47 84.65 0.46 1.61 16 17 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 18 Si 0.95 44.76 27.47 68.60 1.88 46.64 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 22 C 0.51 19.81 7.62 87.78 0.67 20.48 16 23 O -0.50 -22.37 17.75 -2.91 -0.05 -22.42 16 24 C 0.11 2.63 3.92 44.19 0.17 2.81 16 25 H 0.17 2.97 8.14 -2.39 -0.02 2.95 16 26 C -0.09 -1.84 4.09 30.71 0.13 -1.71 16 27 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 28 H 0.06 0.61 8.13 -2.38 -0.02 0.59 16 29 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.13 0.63 8.04 -2.39 -0.02 0.62 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.65 8.00 -2.39 -0.02 1.63 16 34 H 0.05 2.56 7.05 -2.39 -0.02 2.55 16 35 H 0.05 2.35 7.34 -2.38 -0.02 2.33 16 36 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 37 H 0.06 1.55 8.09 -2.39 -0.02 1.53 16 38 H 0.10 2.01 8.02 -2.39 -0.02 1.99 16 Total: -1.00 -86.61 325.36 4.43 -82.18 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 1.02 Total: 2.37 kcal Atomic # 6 Polarization: 36.19 SS G_CDS: 6.03 Total: 42.22 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -4.19 Total: -105.53 kcal Atomic # 8 Polarization: -67.57 SS G_CDS: -0.31 Total: -67.88 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Total: -86.61 4.43 -82.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349165353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.764 kcal (2) G-P(sol) polarization free energy of solvation -86.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds