Wall clock time and date at job start Tue Mar 31 2020 03:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34240 * 116.99754 * 2 1 4 4 O 1.20816 * 119.99860 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99844 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.26692 * 299.50790 * 5 3 2 7 7 C 1.52917 * 109.22937 * 58.91102 * 5 3 2 8 8 C 1.53662 * 109.67949 * 182.45325 * 7 5 3 9 9 N 1.46469 * 107.44155 * 309.05321 * 8 7 5 10 10 C 1.33509 * 129.87231 * 232.08669 * 9 8 7 11 11 O 1.21538 * 124.01848 * 349.02905 * 10 9 8 12 12 N 1.34171 * 111.96953 * 169.07800 * 10 9 8 13 13 C 1.46494 * 124.19532 * 184.44723 * 12 10 9 14 14 C 1.50698 * 109.47109 * 270.01814 * 13 12 10 15 15 H 1.07999 * 119.99779 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00003 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00505 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47134 * 59.99644 * 18 16 14 20 20 H 1.48500 * 109.47613 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46943 * 300.00095 * 18 16 14 22 22 C 1.35020 * 111.61520 * 4.46095 * 12 10 9 23 23 O 1.21235 * 127.19218 * 182.32681 * 22 12 10 24 24 C 1.47951 * 123.26632 * 50.20521 * 9 8 7 25 25 H 1.09000 * 111.67039 * 71.60821 * 24 9 8 26 26 C 1.53169 * 107.13963 * 308.32277 * 24 9 8 27 27 H 1.09004 * 109.46680 * 299.99552 * 1 2 3 28 28 H 1.09001 * 109.47501 * 59.99597 * 1 2 3 29 29 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.38278 * 62.43057 * 7 5 3 31 31 H 1.08994 * 109.50516 * 302.55661 * 7 5 3 32 32 H 1.09002 * 109.87712 * 189.54569 * 8 7 5 33 33 H 1.09002 * 109.87382 * 68.55655 * 8 7 5 34 34 H 1.09000 * 109.47525 * 30.02095 * 13 12 10 35 35 H 1.09001 * 109.47549 * 150.02210 * 13 12 10 36 36 H 0.96991 * 120.00598 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.59995 * 172.96909 * 26 24 9 38 38 H 1.08993 * 109.59912 * 293.43585 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9523 0.7875 0.8946 7 6 4.1078 0.5571 -1.2374 8 6 5.6441 0.5780 -1.2168 9 7 6.0613 1.9647 -0.9969 10 6 6.9177 2.7207 -1.6880 11 8 7.6603 2.2926 -2.5497 12 7 6.8618 4.0090 -1.3176 13 6 7.6172 5.0850 -1.9639 14 6 8.9525 5.2407 -1.2829 15 1 9.2125 4.6017 -0.4519 16 6 9.8424 6.1981 -1.7212 17 7 9.5264 6.9753 -2.7340 18 14 11.4979 6.3906 -0.8775 19 1 12.2580 5.1192 -0.9827 20 1 12.2641 7.4806 -1.5333 21 1 11.2879 6.7246 0.5542 22 6 6.0234 4.1909 -0.2750 23 8 5.7328 5.2407 0.2573 24 6 5.5229 2.8115 0.0903 25 1 5.8923 2.4966 1.0663 26 6 3.9954 2.7455 -0.0004 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7503 1.0625 -2.1346 31 1 3.7592 -0.4756 -1.2405 32 1 6.0325 0.2210 -2.1706 33 1 6.0124 -0.0525 -0.4075 34 1 7.7717 4.8401 -3.0148 35 1 7.0590 6.0181 -1.8866 36 1 10.1523 7.6491 -3.0422 37 1 3.5558 3.2545 0.8574 38 1 3.6629 3.2235 -0.9218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349165359.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:21 Heat of formation + Delta-G solvation = -123.970263 kcal Electronic energy + Delta-G solvation = -24463.509127 eV Core-core repulsion = 20693.262355 eV Total energy + Delta-G solvation = -3770.246772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = -0.21 seconds Orbital eigenvalues (eV) -42.03895 -40.78890 -37.97278 -37.61248 -36.64020 -35.08448 -33.61108 -32.39544 -31.50687 -28.54975 -27.60200 -26.35956 -24.45122 -23.06765 -22.57613 -21.29465 -20.49700 -19.55139 -17.89104 -17.04711 -16.93397 -16.84396 -16.50323 -16.40506 -15.43032 -15.01755 -14.99154 -14.60945 -14.37295 -13.99097 -13.91610 -13.69446 -13.35134 -13.04721 -12.82018 -12.59235 -12.32860 -12.23625 -11.77895 -11.52665 -11.37462 -11.19669 -11.12103 -11.05223 -10.73334 -10.65207 -10.42880 -10.03552 -9.88251 -9.49027 -8.86869 -8.51962 -8.49352 -6.13029 -4.18417 1.88758 2.15933 2.37248 2.66553 3.32100 3.34798 3.37294 3.52250 3.69260 4.13010 4.25656 4.35269 4.41189 4.59236 4.74191 4.76672 4.84091 4.88287 4.90412 5.03825 5.18469 5.23093 5.30244 5.34969 5.51569 5.58334 5.75146 5.90197 6.05818 6.09122 6.59447 6.70668 7.12502 7.22513 7.42681 7.79482 7.94120 8.03761 8.08072 8.70590 8.85897 9.46352 10.96384 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.033412 B = 0.003707 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.827726 B = 7550.543648 C = 7947.180533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.465 3.535 4 O -0.500 6.500 5 C -0.076 4.076 6 H 0.116 0.884 7 C -0.131 4.131 8 C 0.157 3.843 9 N -0.637 5.637 10 C 0.706 3.294 11 O -0.537 6.537 12 N -0.559 5.559 13 C 0.250 3.750 14 C -0.535 4.535 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.891 5.891 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.275 1.275 22 C 0.524 3.476 23 O -0.471 6.471 24 C 0.088 3.912 25 H 0.127 0.873 26 C -0.099 4.099 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.267 0.733 37 H 0.097 0.903 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.984 -16.930 6.192 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.386 6.386 5 C -0.095 4.095 6 H 0.134 0.866 7 C -0.169 4.169 8 C 0.035 3.965 9 N -0.378 5.378 10 C 0.409 3.591 11 O -0.410 6.410 12 N -0.302 5.302 13 C 0.133 3.867 14 C -0.573 4.573 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.310 3.690 23 O -0.341 6.341 24 C -0.020 4.020 25 H 0.144 0.856 26 C -0.137 4.137 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.828 -16.176 5.764 23.354 hybrid contribution 0.688 0.234 0.478 0.870 sum -15.139 -15.942 6.242 22.854 Atomic orbital electron populations 1.23280 0.76258 1.03703 1.02668 1.86498 1.23466 1.33405 1.84137 1.23714 0.91846 0.81382 0.72283 1.90706 1.67055 1.36322 1.44544 1.21030 0.87182 0.98826 1.02459 0.86563 1.22094 0.96203 1.01830 0.96790 1.21386 0.92342 0.79139 1.03613 1.47678 1.45892 1.12984 1.31287 1.15692 0.80583 0.81165 0.81691 1.90934 1.41076 1.74976 1.34029 1.47027 1.41338 1.09679 1.32175 1.19583 0.90586 0.82593 0.93922 1.21214 1.00163 1.18857 1.17089 0.92240 1.24898 0.98802 0.95103 0.94951 1.69908 1.36684 1.20887 1.25471 0.86446 0.82933 0.77850 0.79588 1.20010 1.20975 1.20029 1.20408 0.78728 0.89890 0.80007 1.90752 1.58323 1.30552 1.54507 1.22376 0.95306 0.90277 0.94020 0.85551 1.21637 0.92201 0.94072 1.05807 0.91849 0.91842 0.88050 0.90448 0.88652 0.88153 0.90479 0.92972 0.92954 0.92344 0.88427 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.03 10.37 -39.28 -0.41 -3.44 16 3 C 0.47 4.68 7.25 36.00 0.26 4.94 16 4 O -0.50 -6.65 15.68 -18.74 -0.29 -6.94 16 5 C -0.08 -0.65 2.50 -91.72 -0.23 -0.87 16 6 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 7 C -0.13 -1.02 5.30 -26.43 -0.14 -1.16 16 8 C 0.16 1.51 7.01 -3.71 -0.03 1.49 16 9 N -0.64 -9.22 3.02 -171.84 -0.52 -9.74 16 10 C 0.71 14.42 8.34 -88.59 -0.74 13.68 16 11 O -0.54 -12.82 17.35 5.33 0.09 -12.72 16 12 N -0.56 -12.50 2.60 -122.29 -0.32 -12.82 16 13 C 0.25 6.71 5.45 -5.20 -0.03 6.68 16 14 C -0.53 -15.44 9.39 -34.44 -0.32 -15.77 16 15 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 17 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 18 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.52 10.28 7.62 -10.62 -0.08 10.20 16 23 O -0.47 -10.52 17.76 5.60 0.10 -10.42 16 24 C 0.09 1.19 3.92 -67.95 -0.27 0.93 16 25 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 26 C -0.10 -1.13 4.10 -26.55 -0.11 -1.24 16 27 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 28 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.53 8.02 -51.93 -0.42 0.11 16 32 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 1.48 7.92 -51.93 -0.41 1.07 16 35 H 0.05 1.47 7.99 -51.93 -0.42 1.06 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.10 1.10 8.00 -51.93 -0.42 0.69 16 38 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -36.10 328.97 -6.38 -42.48 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -5.00 Total: -4.52 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: -0.71 Total: 21.95 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.10 Total: -48.33 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.51 Total: -33.52 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.10 -6.38 -42.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349165359.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.489 kcal (2) G-P(sol) polarization free energy of solvation -36.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.21 seconds