Wall clock time and date at job start Tue Mar 31 2020 03:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34240 * 116.99754 * 2 1 4 4 O 1.20816 * 119.99860 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99844 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.26692 * 299.50790 * 5 3 2 7 7 C 1.52917 * 109.22937 * 58.91102 * 5 3 2 8 8 C 1.53662 * 109.67949 * 182.45325 * 7 5 3 9 9 N 1.46469 * 107.44155 * 309.05321 * 8 7 5 10 10 C 1.33509 * 129.87231 * 232.08669 * 9 8 7 11 11 O 1.21538 * 124.01848 * 349.02905 * 10 9 8 12 12 N 1.34171 * 111.96953 * 169.07800 * 10 9 8 13 13 C 1.46494 * 124.19532 * 184.44723 * 12 10 9 14 14 C 1.50698 * 109.47109 * 270.01814 * 13 12 10 15 15 H 1.07999 * 119.99779 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00003 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00505 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47134 * 59.99644 * 18 16 14 20 20 H 1.48500 * 109.47613 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46943 * 300.00095 * 18 16 14 22 22 C 1.35020 * 111.61520 * 4.46095 * 12 10 9 23 23 O 1.21235 * 127.19218 * 182.32681 * 22 12 10 24 24 C 1.47951 * 123.26632 * 50.20521 * 9 8 7 25 25 H 1.09000 * 111.67039 * 71.60821 * 24 9 8 26 26 C 1.53169 * 107.13963 * 308.32277 * 24 9 8 27 27 H 1.09004 * 109.46680 * 299.99552 * 1 2 3 28 28 H 1.09001 * 109.47501 * 59.99597 * 1 2 3 29 29 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.38278 * 62.43057 * 7 5 3 31 31 H 1.08994 * 109.50516 * 302.55661 * 7 5 3 32 32 H 1.09002 * 109.87712 * 189.54569 * 8 7 5 33 33 H 1.09002 * 109.87382 * 68.55655 * 8 7 5 34 34 H 1.09000 * 109.47525 * 30.02095 * 13 12 10 35 35 H 1.09001 * 109.47549 * 150.02210 * 13 12 10 36 36 H 0.96991 * 120.00598 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.59995 * 172.96909 * 26 24 9 38 38 H 1.08993 * 109.59912 * 293.43585 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9523 0.7875 0.8946 7 6 4.1078 0.5571 -1.2374 8 6 5.6441 0.5780 -1.2168 9 7 6.0613 1.9647 -0.9969 10 6 6.9177 2.7207 -1.6880 11 8 7.6603 2.2926 -2.5497 12 7 6.8618 4.0090 -1.3176 13 6 7.6172 5.0850 -1.9639 14 6 8.9525 5.2407 -1.2829 15 1 9.2125 4.6017 -0.4519 16 6 9.8424 6.1981 -1.7212 17 7 9.5264 6.9753 -2.7340 18 14 11.4979 6.3906 -0.8775 19 1 12.2580 5.1192 -0.9827 20 1 12.2641 7.4806 -1.5333 21 1 11.2879 6.7246 0.5542 22 6 6.0234 4.1909 -0.2750 23 8 5.7328 5.2407 0.2573 24 6 5.5229 2.8115 0.0903 25 1 5.8923 2.4966 1.0663 26 6 3.9954 2.7455 -0.0004 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7503 1.0625 -2.1346 31 1 3.7592 -0.4756 -1.2405 32 1 6.0325 0.2210 -2.1706 33 1 6.0124 -0.0525 -0.4075 34 1 7.7717 4.8401 -3.0148 35 1 7.0590 6.0181 -1.8866 36 1 10.1523 7.6491 -3.0422 37 1 3.5558 3.2545 0.8574 38 1 3.6629 3.2235 -0.9218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349165359.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:20 Heat of formation + Delta-G solvation = -149.304756 kcal Electronic energy + Delta-G solvation = -24464.607713 eV Core-core repulsion = 20693.262355 eV Total energy + Delta-G solvation = -3771.345358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.47538 -41.60322 -39.59285 -38.70674 -37.48344 -36.78854 -35.33901 -33.95518 -32.63973 -29.84017 -28.91454 -27.36238 -26.01941 -24.42558 -23.92639 -22.40224 -21.66586 -20.72534 -18.96937 -18.69682 -18.24423 -18.10528 -17.70216 -17.32267 -17.02836 -16.64162 -16.25587 -16.03382 -15.61473 -15.26047 -14.92536 -14.76529 -14.63643 -14.43830 -13.89131 -13.79238 -13.72738 -13.36770 -13.17425 -12.96623 -12.71047 -12.67437 -12.40913 -12.08916 -12.01578 -11.94657 -11.76011 -11.62744 -11.47298 -11.07720 -10.71668 -10.58828 -9.94190 -8.33676 -6.49243 0.65553 1.13388 1.23060 1.36458 1.40863 1.48996 1.72069 2.03725 2.16773 2.35912 2.95664 3.00259 3.38925 3.54188 3.64324 3.84454 3.97424 4.09309 4.26660 4.36402 4.37608 4.44934 4.51345 4.65115 4.72500 4.77289 4.78253 4.88039 4.93241 4.97604 5.15943 5.22537 5.38690 5.55437 5.58888 5.82886 6.29530 6.46528 6.57238 6.70574 7.11752 7.24821 8.76219 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.033412 B = 0.003707 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.827726 B = 7550.543648 C = 7947.180533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.470 3.530 4 O -0.540 6.540 5 C -0.068 4.068 6 H 0.159 0.841 7 C -0.121 4.121 8 C 0.148 3.852 9 N -0.617 5.617 10 C 0.699 3.301 11 O -0.582 6.582 12 N -0.578 5.578 13 C 0.266 3.734 14 C -0.557 4.557 15 H 0.057 0.943 16 C 0.012 3.988 17 N -0.924 5.924 18 Si 0.977 3.023 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.265 1.265 22 C 0.512 3.488 23 O -0.508 6.508 24 C 0.109 3.891 25 H 0.174 0.826 26 C -0.094 4.094 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.134 0.866 30 H 0.059 0.941 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.022 0.978 35 H 0.026 0.974 36 H 0.272 0.728 37 H 0.103 0.897 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.275 -19.946 8.393 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.314 3.686 4 O -0.430 6.430 5 C -0.087 4.087 6 H 0.177 0.823 7 C -0.159 4.159 8 C 0.029 3.971 9 N -0.356 5.356 10 C 0.401 3.599 11 O -0.459 6.459 12 N -0.321 5.321 13 C 0.146 3.854 14 C -0.595 4.595 15 H 0.075 0.925 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.800 3.200 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.190 1.190 22 C 0.300 3.700 23 O -0.380 6.380 24 C 0.003 3.997 25 H 0.191 0.809 26 C -0.132 4.132 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.150 0.850 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.185 -19.273 7.996 26.407 hybrid contribution 0.646 1.141 -0.241 1.333 sum -15.539 -18.132 7.754 25.107 Atomic orbital electron populations 1.23541 0.75013 1.05727 1.02290 1.86486 1.24645 1.32208 1.83530 1.23913 0.92274 0.81253 0.71124 1.90709 1.67997 1.37723 1.46561 1.21028 0.86423 0.96588 1.04650 0.82327 1.22065 0.94474 1.03655 0.95670 1.21930 0.93574 0.76416 1.05185 1.47875 1.43598 1.14236 1.29934 1.15842 0.81348 0.80876 0.81785 1.90890 1.43311 1.75552 1.36167 1.46989 1.41878 1.09992 1.33253 1.18952 0.90498 0.83146 0.92760 1.21490 1.01249 1.19366 1.17393 0.92510 1.25912 1.02960 0.94446 0.95527 1.70028 1.38235 1.21323 1.26663 0.85329 0.77706 0.78258 0.78728 1.19237 1.19784 1.18995 1.21460 0.77684 0.92136 0.78690 1.90716 1.59301 1.32708 1.55317 1.22512 0.96526 0.85523 0.95161 0.80881 1.21572 0.90108 0.96701 1.04849 0.92054 0.92519 0.84827 0.92238 0.84960 0.88714 0.86167 0.95956 0.95621 0.91891 0.87889 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -4.69 10.37 -51.51 -0.53 -5.22 16 3 C 0.47 8.12 7.25 71.23 0.52 8.63 16 4 O -0.54 -13.72 15.68 21.99 0.34 -13.37 16 5 C -0.07 -0.88 2.50 -11.51 -0.03 -0.91 16 6 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 7 C -0.12 -1.40 5.30 30.79 0.16 -1.24 16 8 C 0.15 2.29 7.01 86.61 0.61 2.90 16 9 N -0.62 -16.69 3.02 -816.56 -2.47 -19.15 16 10 C 0.70 29.02 8.34 179.64 1.50 30.52 16 11 O -0.58 -28.70 17.35 -3.84 -0.07 -28.77 16 12 N -0.58 -26.95 2.60 -777.70 -2.02 -28.97 16 13 C 0.27 15.22 5.45 85.63 0.47 15.68 16 14 C -0.56 -33.35 9.39 25.60 0.24 -33.11 16 15 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16 16 C 0.01 0.69 5.46 84.65 0.46 1.15 16 17 N -0.92 -56.68 13.29 21.45 0.28 -56.40 16 18 Si 0.98 45.44 29.54 68.60 2.03 47.47 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 C 0.51 20.45 7.62 87.78 0.67 21.12 16 23 O -0.51 -23.49 17.76 -2.89 -0.05 -23.55 16 24 C 0.11 2.72 3.92 44.19 0.17 2.89 16 25 H 0.17 2.92 8.14 -2.39 -0.02 2.90 16 26 C -0.09 -1.96 4.10 30.71 0.13 -1.83 16 27 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 28 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 29 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.13 0.71 8.02 -2.39 -0.02 0.69 16 32 H 0.09 1.68 8.03 -2.39 -0.02 1.66 16 33 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.02 1.38 7.92 -2.39 -0.02 1.36 16 35 H 0.03 1.57 7.99 -2.39 -0.02 1.55 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.10 2.12 8.00 -2.39 -0.02 2.10 16 38 H 0.06 1.55 8.09 -2.39 -0.02 1.53 16 Total: -1.00 -85.03 328.97 4.68 -80.35 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: 1.08 Total: 0.35 kcal Atomic # 6 Polarization: 41.17 SS G_CDS: 6.09 Total: 47.26 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -4.21 Total: -104.52 kcal Atomic # 8 Polarization: -70.60 SS G_CDS: -0.31 Total: -70.91 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -85.03 4.68 -80.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349165359.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.956 kcal (2) G-P(sol) polarization free energy of solvation -85.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds