Wall clock time and date at job start Tue Mar 31 2020 03:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47190 * 2 1 4 4 C 1.50694 * 109.47163 * 179.97438 * 3 2 1 5 5 N 1.29945 * 125.36876 * 90.34990 * 4 3 2 6 6 C 1.36072 * 108.48742 * 180.16431 * 5 4 3 7 7 C 1.47324 * 126.45917 * 179.82260 * 6 5 4 8 8 O 1.21646 * 120.00108 * 181.06335 * 7 6 5 9 9 N 1.34775 * 119.99857 * 1.05913 * 7 6 5 10 10 C 1.36943 * 119.99873 * 4.16068 * 9 7 6 11 11 H 1.07989 * 120.00256 * 326.31085 * 10 9 7 12 12 C 1.38995 * 119.99849 * 146.31348 * 10 9 7 13 13 N 1.31405 * 119.99878 * 18.95181 * 12 10 9 14 14 Si 1.86793 * 119.99802 * 198.95988 * 12 10 9 15 15 H 1.48493 * 109.47527 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47416 * 120.00153 * 14 12 10 17 17 H 1.48506 * 109.46915 * 239.99506 * 14 12 10 18 18 C 1.46507 * 119.99715 * 184.43221 * 9 7 6 19 19 C 1.50693 * 109.47065 * 269.72587 * 18 9 7 20 20 O 1.20823 * 120.00458 * 0.02562 * 19 18 9 21 21 O 1.34231 * 119.99763 * 180.02562 * 19 18 9 22 22 C 1.45202 * 117.00003 * 180.02562 * 21 19 18 23 23 C 1.36193 * 107.08653 * 359.56257 * 6 5 4 24 24 O 1.34051 * 125.37484 * 270.02207 * 4 3 2 25 25 H 1.09000 * 109.47072 * 300.00221 * 1 2 3 26 26 H 1.08994 * 109.46829 * 60.00346 * 1 2 3 27 27 H 1.08999 * 109.47096 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47533 * 239.99552 * 2 1 3 29 29 H 1.09001 * 109.47214 * 119.99741 * 2 1 3 30 30 H 1.09000 * 109.47294 * 59.99915 * 3 2 1 31 31 H 1.09001 * 109.46830 * 299.99976 * 3 2 1 32 32 H 0.97001 * 119.99845 * 174.87973 * 13 12 10 33 33 H 1.08995 * 109.46945 * 29.73249 * 18 9 7 34 34 H 1.09003 * 109.46697 * 149.72714 * 18 9 7 35 35 H 1.08999 * 109.47023 * 179.97438 * 22 21 19 36 36 H 1.09003 * 109.46950 * 300.00260 * 22 21 19 37 37 H 1.09008 * 109.47273 * 59.99896 * 22 21 19 38 38 H 1.07997 * 126.53499 * 180.30024 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2996 1.4488 -1.0587 6 6 5.6015 1.4428 -0.6630 7 6 6.7837 1.4430 -1.5421 8 8 7.9002 1.4176 -1.0600 9 7 6.6281 1.4713 -2.8806 10 6 5.3755 1.5858 -3.4220 11 1 4.5296 1.1329 -2.9265 12 6 5.1928 2.2850 -4.6093 13 7 6.2161 2.5129 -5.4017 14 14 3.4929 2.9009 -5.0784 15 1 2.5191 2.5169 -4.0252 16 1 3.5214 4.3797 -5.2115 17 1 3.0866 2.2953 -6.3721 18 6 7.7986 1.3736 -3.7563 19 6 8.3251 2.7553 -4.0470 20 8 7.7791 3.7224 -3.5713 21 8 9.4008 2.9116 -4.8346 22 6 9.8528 4.2710 -5.0710 23 6 5.6058 1.4423 0.6989 24 8 4.3225 1.4422 1.0940 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.0772 2.9347 -6.2640 33 1 8.5730 0.7859 -3.2634 34 1 7.5140 0.8892 -4.6903 35 1 10.7274 4.2552 -5.7213 36 1 9.0554 4.8414 -5.5476 37 1 10.1151 4.7371 -4.1211 38 1 6.4756 1.4427 1.3391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353480060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:48 Heat of formation + Delta-G solvation = -81.720796 kcal Electronic energy + Delta-G solvation = -24656.879291 eV Core-core repulsion = 20888.464593 eV Total energy + Delta-G solvation = -3768.414697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.75816 -39.35898 -38.11675 -35.42851 -35.26048 -34.51112 -33.96813 -31.51520 -30.25657 -28.50135 -26.85247 -26.26458 -24.83978 -22.79342 -22.09915 -20.83166 -19.99559 -19.31381 -17.93210 -16.56092 -16.21157 -16.12316 -15.96246 -15.38925 -15.20428 -14.99038 -14.65864 -14.28133 -14.11061 -13.49385 -13.28826 -13.16119 -12.65939 -12.41783 -12.31647 -12.13629 -11.76473 -11.47706 -11.37669 -11.30083 -11.16022 -11.04734 -10.75689 -10.69333 -10.47660 -10.29789 -9.80542 -9.69702 -9.20142 -8.97058 -8.67686 -8.36965 -7.78355 -6.44159 -3.93618 1.77571 2.74763 3.11447 3.18897 3.29146 3.34730 3.67195 3.78826 4.18473 4.31368 4.42062 4.67505 4.95726 4.97257 5.10013 5.22608 5.41909 5.63684 5.65214 5.73093 5.73874 5.81546 5.87259 5.94566 5.99648 6.09845 6.21048 6.23510 6.26555 6.32504 6.44660 6.69839 6.81901 7.53684 7.60815 7.79005 8.21981 8.52532 9.07990 9.19289 9.37917 9.75748 10.64066 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.017114 B = 0.005680 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.653971 B = 4928.631118 C = 6166.897664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.019 4.019 4 C 0.163 3.837 5 N -0.419 5.419 6 C -0.014 4.014 7 C 0.535 3.465 8 O -0.603 6.603 9 N -0.406 5.406 10 C -0.326 4.326 11 H 0.141 0.859 12 C 0.047 3.953 13 N -0.879 5.879 14 Si 0.928 3.072 15 H -0.261 1.261 16 H -0.283 1.283 17 H -0.285 1.285 18 C 0.154 3.846 19 C 0.492 3.508 20 O -0.508 6.508 21 O -0.375 6.375 22 C 0.045 3.955 23 C -0.034 4.034 24 O -0.208 6.208 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.271 0.729 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 -2.881 5.585 8.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.057 4.057 4 C -0.045 4.045 5 N -0.149 5.149 6 C -0.134 4.134 7 C 0.325 3.675 8 O -0.490 6.490 9 N -0.122 5.122 10 C -0.453 4.453 11 H 0.158 0.842 12 C -0.157 4.157 13 N -0.518 5.518 14 Si 0.755 3.245 15 H -0.185 1.185 16 H -0.209 1.209 17 H -0.211 1.211 18 C 0.029 3.971 19 C 0.333 3.667 20 O -0.393 6.393 21 O -0.292 6.292 22 C -0.050 4.050 23 C -0.107 4.107 24 O -0.095 6.095 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.419 -2.413 5.160 7.862 hybrid contribution -0.382 0.857 0.078 0.942 sum -5.801 -1.556 5.238 7.969 Atomic orbital electron populations 1.21750 0.95043 1.01947 1.02022 1.21539 0.96061 0.95204 1.03235 1.20075 0.81752 0.99076 1.04802 1.26523 0.96324 1.02547 0.79126 1.71335 1.01133 1.15101 1.27313 1.21795 0.92101 1.07365 0.92163 1.16779 0.85701 0.82922 0.82109 1.90659 1.24450 1.58509 1.75347 1.43229 1.06542 1.59691 1.02694 1.20686 0.84845 1.31603 1.08216 0.84246 1.25449 0.99219 0.94599 0.96470 1.69550 1.31003 1.41739 1.09486 0.85846 0.81998 0.78681 0.77964 1.18532 1.20918 1.21132 1.20641 0.88533 0.90596 0.97320 1.23715 0.75670 0.93443 0.73823 1.90510 1.56440 1.41876 1.50520 1.86448 1.46429 1.30799 1.65546 1.22902 0.99018 0.82473 1.00583 1.25023 0.84231 1.05443 0.96005 1.84261 1.16855 1.70191 1.38185 0.92656 0.92285 0.92418 0.90738 0.91644 0.89471 0.87756 0.91805 0.90274 0.85368 0.89667 0.92794 0.93283 0.76213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 3 C -0.02 -0.24 5.84 -27.88 -0.16 -0.40 16 4 C 0.16 2.84 7.56 -13.08 -0.10 2.74 16 5 N -0.42 -9.04 7.91 -7.66 -0.06 -9.10 16 6 C -0.01 -0.31 6.72 -83.03 -0.56 -0.87 16 7 C 0.54 13.86 7.62 -12.57 -0.10 13.77 16 8 O -0.60 -16.20 16.51 5.24 0.09 -16.11 16 9 N -0.41 -10.71 2.10 -117.35 -0.25 -10.96 16 10 C -0.33 -8.62 8.41 -14.99 -0.13 -8.74 16 11 H 0.14 3.61 5.17 -52.49 -0.27 3.34 16 12 C 0.05 1.23 5.27 -17.45 -0.09 1.13 16 13 N -0.88 -23.39 8.31 55.50 0.46 -22.93 16 14 Si 0.93 20.94 29.60 -169.99 -5.03 15.91 16 15 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 C 0.15 3.82 5.22 -5.19 -0.03 3.79 16 19 C 0.49 12.62 5.83 36.00 0.21 12.83 16 20 O -0.51 -14.65 15.39 -18.75 -0.29 -14.94 16 21 O -0.37 -8.35 10.57 -39.26 -0.41 -8.77 16 22 C 0.04 0.81 10.56 101.05 1.07 1.88 16 23 C -0.03 -0.63 11.95 30.00 0.36 -0.27 16 24 O -0.21 -3.56 10.73 6.47 0.07 -3.49 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.27 6.97 8.32 -40.82 -0.34 6.63 16 33 H 0.08 1.82 7.48 -51.93 -0.39 1.43 16 34 H 0.13 3.14 6.86 -51.93 -0.36 2.78 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 37 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.22 3.39 8.06 -52.49 -0.42 2.97 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -33.55 330.52 -4.56 -38.11 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.80 Total: 3.87 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 0.68 Total: 23.43 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.15 Total: -42.99 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.55 Total: -43.31 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.55 -4.56 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353480060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.612 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds