Wall clock time and date at job start Tue Mar 31 2020 03:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37098 * 120.00036 * 2 1 4 4 H 1.07998 * 119.99869 * 207.06833 * 3 2 1 5 5 C 1.38949 * 119.99875 * 27.07810 * 3 2 1 6 6 N 1.31408 * 120.00333 * 9.29440 * 5 3 2 7 7 Si 1.86801 * 119.99636 * 189.29897 * 5 3 2 8 8 H 1.48499 * 109.47295 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47177 * 119.99547 * 7 5 3 10 10 H 1.48499 * 109.47051 * 239.99445 * 7 5 3 11 11 C 1.34785 * 119.99923 * 179.97438 * 2 1 3 12 12 O 1.21288 * 119.99668 * 180.02562 * 11 2 1 13 13 C 1.50694 * 119.99863 * 0.02562 * 11 2 1 14 14 H 1.09008 * 109.54377 * 31.37808 * 13 11 2 15 15 C 1.53099 * 109.51065 * 271.27244 * 13 11 2 16 16 O 1.43012 * 109.26156 * 183.21744 * 15 13 11 17 17 C 1.43021 * 113.73823 * 58.66970 * 16 15 13 18 18 C 1.53095 * 109.25624 * 301.32901 * 17 16 15 19 19 N 1.47015 * 109.25921 * 56.85089 * 18 17 16 20 20 C 1.46902 * 111.00119 * 177.60734 * 19 18 17 21 21 C 1.52996 * 109.46721 * 286.61924 * 20 19 18 22 22 F 1.39898 * 109.47168 * 64.20731 * 21 20 19 23 23 F 1.39904 * 109.47175 * 184.20281 * 21 20 19 24 24 F 1.39899 * 109.47530 * 304.20266 * 21 20 19 25 25 H 1.09000 * 109.46864 * 264.59080 * 1 2 3 26 26 H 1.08998 * 109.46449 * 24.59142 * 1 2 3 27 27 H 1.08996 * 109.47298 * 144.59320 * 1 2 3 28 28 H 0.96998 * 120.00563 * 180.02562 * 6 5 3 29 29 H 1.09005 * 109.50416 * 303.15611 * 15 13 11 30 30 H 1.09005 * 109.50545 * 63.27955 * 15 13 11 31 31 H 1.09000 * 109.50494 * 181.39781 * 17 16 15 32 32 H 1.08993 * 109.54156 * 61.28495 * 17 16 15 33 33 H 1.09001 * 109.50801 * 296.91175 * 18 17 16 34 34 H 1.08998 * 109.50639 * 176.78511 * 18 17 16 35 35 H 1.09002 * 109.46822 * 46.62149 * 20 19 18 36 36 H 1.08996 * 109.46847 * 166.62255 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1418 1.2385 -0.4256 5 6 1.5700 2.3247 0.5478 6 7 0.4486 2.2284 1.2261 7 14 2.3836 3.9907 0.3198 8 1 3.6270 3.8296 -0.4760 9 1 1.4535 4.9023 -0.3935 10 1 2.7174 4.5644 1.6482 11 6 2.1389 -1.1673 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 1 0.4438 -2.3497 -0.5348 15 6 1.1014 -2.8988 1.4432 16 8 0.4530 -4.1735 1.4394 17 6 1.2138 -5.2045 0.8040 18 6 1.4988 -4.8014 -0.6452 19 7 2.1948 -3.5065 -0.6604 20 6 2.5380 -3.1094 -2.0325 21 6 3.6988 -3.9690 -2.5368 22 9 3.2911 -5.3051 -2.6126 23 9 4.0887 -3.5278 -3.8059 24 9 4.7780 -3.8601 -1.6533 25 1 -0.3633 -0.0969 1.0231 26 1 -0.3632 0.9345 -0.4277 27 1 -0.3633 -0.8376 -0.5954 28 1 0.0432 3.0224 1.6081 29 1 2.0399 -2.9693 1.9933 30 1 0.4541 -2.1625 1.9197 31 1 0.6476 -6.1358 0.8181 32 1 2.1554 -5.3428 1.3352 33 1 0.5591 -4.7160 -1.1908 34 1 2.1266 -5.5575 -1.1165 35 1 1.6723 -3.2520 -2.6793 36 1 2.8313 -2.0597 -2.0442 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367395507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:21 Heat of formation + Delta-G solvation = -224.351045 kcal Electronic energy + Delta-G solvation = -25975.895421 eV Core-core repulsion = 21659.439071 eV Total energy + Delta-G solvation = -4316.456349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.12152 -48.69282 -48.52185 -41.46575 -39.51729 -37.16864 -36.42630 -33.82712 -32.33121 -31.30682 -28.33373 -27.24678 -26.67539 -25.29169 -23.85167 -22.31347 -20.61015 -19.59268 -19.43254 -18.90596 -18.58321 -18.16226 -17.42043 -17.26203 -16.62721 -16.27228 -15.87696 -15.74065 -15.56591 -15.42767 -15.25211 -15.20013 -14.88929 -14.85457 -14.73030 -14.63471 -14.05806 -13.77126 -13.38351 -13.17681 -13.10154 -13.01366 -12.73014 -12.67658 -12.46749 -12.16408 -12.10733 -11.65449 -11.01641 -10.89242 -10.28809 -9.66273 -9.60288 -8.35083 -6.03263 1.35090 1.42121 1.54567 1.62108 1.89034 2.18778 2.34470 2.69354 2.79882 3.02542 3.06402 3.07402 3.41863 3.75930 3.83821 3.86909 3.93018 4.02128 4.22895 4.25959 4.36355 4.57061 4.61640 4.69439 4.80554 4.91429 5.00580 5.35991 5.40965 5.44143 5.69797 6.00561 6.12815 6.47135 7.15268 7.41282 7.98898 8.67706 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.005645 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.592452 B = 4959.071936 C = 6077.781490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.456 5.456 3 C -0.341 4.341 4 H 0.071 0.929 5 C 0.002 3.998 6 N -0.894 5.894 7 Si 0.986 3.014 8 H -0.274 1.274 9 H -0.265 1.265 10 H -0.277 1.277 11 C 0.445 3.555 12 O -0.605 6.605 13 C 0.056 3.944 14 H 0.085 0.915 15 C 0.090 3.910 16 O -0.384 6.384 17 C 0.059 3.941 18 C -0.001 4.001 19 N -0.527 5.527 20 C 0.012 3.988 21 C 0.468 3.532 22 F -0.175 7.175 23 F -0.185 7.185 24 F -0.183 7.183 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.274 0.726 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 -12.947 -5.338 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.176 5.176 3 C -0.469 4.469 4 H 0.089 0.911 5 C -0.200 4.200 6 N -0.532 5.532 7 Si 0.810 3.190 8 H -0.199 1.199 9 H -0.190 1.190 10 H -0.203 1.203 11 C 0.233 3.767 12 O -0.490 6.490 13 C -0.055 4.055 14 H 0.102 0.898 15 C 0.012 3.988 16 O -0.302 6.302 17 C -0.018 4.018 18 C -0.128 4.128 19 N -0.254 5.254 20 C -0.117 4.117 21 C 0.413 3.587 22 F -0.157 7.157 23 F -0.167 7.167 24 F -0.164 7.164 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.154 0.846 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.657 -12.907 -4.895 14.058 hybrid contribution 0.258 1.182 -0.571 1.338 sum -2.399 -11.725 -5.466 13.157 Atomic orbital electron populations 1.21528 0.79518 1.00827 1.00712 1.43839 1.06617 1.04436 1.62676 1.19595 1.01982 0.86401 1.38899 0.91068 1.26053 0.96967 1.02829 0.94157 1.70016 1.19319 1.31170 1.32741 0.84981 0.78351 0.77534 0.78137 1.19915 1.19029 1.20298 1.20381 0.87925 0.85214 0.83177 1.90545 1.15380 1.87352 1.55712 1.22152 0.95032 0.89663 0.98676 0.89771 1.22316 0.98132 0.85938 0.92398 1.87991 1.45323 1.17896 1.78963 1.22933 0.97090 0.91362 0.90387 1.23441 0.98994 0.90496 0.99862 1.61589 1.45471 1.03469 1.14837 1.23188 0.96303 1.00200 0.92051 1.20327 0.84594 0.79007 0.74781 1.93065 1.90006 1.36780 1.95844 1.93169 1.92197 1.89404 1.41892 1.93202 1.58368 1.95870 1.69004 0.93420 0.92037 0.91997 0.91612 0.93269 0.87637 0.84559 0.92572 0.91663 0.86682 0.87388 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.86 8.44 127.77 1.08 5.93 16 2 N -0.46 -22.36 3.01 -658.89 -1.98 -24.35 16 3 C -0.34 -18.69 9.19 84.04 0.77 -17.92 16 4 H 0.07 4.20 7.49 -2.91 -0.02 4.18 16 5 C 0.00 0.12 5.10 84.93 0.43 0.55 16 6 N -0.89 -45.79 10.82 21.66 0.23 -45.56 16 7 Si 0.99 41.58 29.56 68.60 2.03 43.61 16 8 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 9 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 10 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 11 C 0.44 20.67 5.50 87.65 0.48 21.15 16 12 O -0.60 -33.04 15.39 -3.06 -0.05 -33.09 16 13 C 0.06 1.96 1.78 44.18 0.08 2.04 16 14 H 0.08 2.63 5.99 -2.38 -0.01 2.62 16 15 C 0.09 2.99 6.27 72.02 0.45 3.45 16 16 O -0.38 -10.85 10.83 -148.98 -1.61 -12.46 16 17 C 0.06 1.30 7.01 72.01 0.50 1.80 16 18 C 0.00 -0.03 5.34 86.31 0.46 0.43 16 19 N -0.53 -16.65 4.08 -874.39 -3.56 -20.22 16 20 C 0.01 0.37 4.76 86.30 0.41 0.78 16 21 C 0.47 13.68 3.26 71.98 0.23 13.91 16 22 F -0.18 -4.33 14.43 44.97 0.65 -3.68 16 23 F -0.19 -5.35 17.32 44.97 0.78 -4.57 16 24 F -0.18 -6.50 17.16 44.97 0.77 -5.73 16 25 H 0.05 2.02 7.83 -2.39 -0.02 2.00 16 26 H 0.06 2.74 6.81 -2.39 -0.02 2.72 16 27 H 0.06 2.05 6.04 -2.39 -0.01 2.04 16 28 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 29 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.11 3.52 8.13 -2.38 -0.02 3.50 16 31 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.12 2.38 5.38 -2.39 -0.01 2.37 16 35 H 0.11 2.49 8.03 -2.39 -0.02 2.48 16 36 H 0.10 3.65 5.98 -2.39 -0.01 3.64 16 Total: -1.00 -64.59 303.11 3.28 -61.31 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.12 Total: 12.60 kcal Atomic # 6 Polarization: 27.23 SS G_CDS: 4.91 Total: 32.14 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -5.31 Total: -90.12 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.66 Total: -45.56 kcal Atomic # 9 Polarization: -16.18 SS G_CDS: 2.20 Total: -13.98 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -64.59 3.28 -61.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367395507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.042 kcal (2) G-P(sol) polarization free energy of solvation -64.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds