Wall clock time and date at job start Tue Mar 31 2020 03:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99693 * 2 1 4 4 H 1.48499 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46981 * 299.99687 * 3 2 1 6 6 H 1.48496 * 109.47358 * 59.99992 * 3 2 1 7 7 C 1.37874 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99581 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00297 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46839 * 179.97438 * 9 7 2 11 11 C 1.36454 * 125.85130 * 84.98263 * 10 9 7 12 12 C 1.34956 * 108.94396 * 179.97438 * 11 10 9 13 13 C 1.41206 * 108.25105 * 359.97438 * 12 11 10 14 14 N 1.32931 * 126.38025 * 179.97438 * 13 12 11 15 15 C 1.33832 * 120.00335 * 0.02599 * 14 13 12 16 16 O 1.21843 * 119.99683 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00147 * 179.72624 * 15 14 13 18 18 C 1.46495 * 119.99663 * 180.27726 * 17 15 14 19 19 C 1.53004 * 109.46738 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.46988 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46983 * 179.97438 * 20 19 18 22 22 O 1.20826 * 120.00365 * 0.02562 * 21 20 19 23 23 O 1.34229 * 119.99738 * 179.97438 * 21 20 19 24 24 N 1.37423 * 107.23786 * 0.22725 * 13 12 11 25 25 H 0.97004 * 126.36573 * 179.77087 * 24 13 12 26 26 H 0.97002 * 120.00446 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46437 * 59.99936 * 9 7 2 28 28 H 1.08996 * 109.46958 * 300.00042 * 9 7 2 29 29 H 1.07998 * 125.52893 * 359.97438 * 11 10 9 30 30 H 1.08006 * 125.87713 * 180.02562 * 12 11 10 31 31 H 0.97000 * 119.99736 * 0.26996 * 17 15 14 32 32 H 1.09007 * 109.47376 * 299.99203 * 18 17 15 33 33 H 1.08997 * 109.47774 * 59.99894 * 18 17 15 34 34 H 1.09006 * 109.47053 * 299.99454 * 19 18 17 35 35 H 1.08997 * 109.47419 * 59.99839 * 19 18 17 36 36 H 1.08999 * 109.47457 * 299.99692 * 20 19 18 37 37 H 1.08997 * 109.47600 * 59.99950 * 20 19 18 38 38 H 0.96704 * 116.99748 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 2.7969 -4.1566 1.1030 12 6 3.6092 -5.1608 0.7119 13 6 3.5351 -5.2675 -0.6942 14 7 4.1909 -6.1387 -1.4545 15 6 5.0175 -7.0284 -0.8922 16 8 5.1693 -7.0396 0.3167 17 7 5.6781 -7.9152 -1.6626 18 6 6.5783 -8.8930 -1.0463 19 6 7.1959 -9.7740 -2.1342 20 6 8.1365 -10.7948 -1.4908 21 6 8.7444 -11.6629 -2.5622 22 8 8.4554 -11.4832 -3.7216 23 8 9.6077 -12.6351 -2.2286 24 7 2.6630 -4.2992 -1.1306 25 1 2.4113 -4.1245 -2.0510 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5574 -0.8880 28 1 0.6248 -2.5563 0.8919 29 1 2.6419 -3.8357 2.1225 30 1 4.2117 -5.7775 1.3625 31 1 5.5575 -7.9060 -2.6250 32 1 7.3696 -8.3703 -0.5089 33 1 6.0166 -9.5160 -0.3503 34 1 6.4044 -10.2967 -2.6713 35 1 7.7576 -9.1513 -2.8306 36 1 8.9280 -10.2718 -0.9540 37 1 7.5753 -11.4175 -0.7942 38 1 9.9718 -13.1656 -2.9506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563145929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:04 Heat of formation + Delta-G solvation = -30.285808 kcal Electronic energy + Delta-G solvation = -22158.701163 eV Core-core repulsion = 18424.809605 eV Total energy + Delta-G solvation = -3733.891558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75160 -40.58334 -38.84595 -36.64955 -35.65780 -34.17631 -32.90811 -32.59813 -31.00900 -30.56643 -27.67790 -26.45398 -23.53160 -22.80458 -21.49289 -21.17268 -21.09917 -19.60682 -18.43788 -17.39186 -16.98545 -16.79024 -16.67999 -16.02520 -15.55395 -15.33990 -14.91563 -14.67407 -14.23846 -14.03253 -13.83994 -13.35203 -13.15972 -12.76139 -12.67005 -12.46756 -12.38402 -11.95269 -11.87821 -11.64250 -11.35220 -11.14808 -11.07760 -10.93565 -10.53080 -10.36499 -9.71151 -9.54457 -9.00458 -8.91743 -8.58586 -8.34224 -6.87283 -6.47294 -4.64498 1.81267 1.85869 2.10920 2.64793 3.05068 3.14447 3.17350 3.20792 3.66769 4.07360 4.42700 4.56678 4.60616 4.70914 4.77380 4.82469 5.16571 5.24613 5.28357 5.29608 5.56346 5.78044 5.94188 5.95511 6.04412 6.14198 6.27608 6.55063 6.57935 6.74904 7.08708 7.38291 7.41756 7.52560 7.52814 7.65445 7.88534 8.31369 8.44883 8.48835 9.06155 9.63998 10.53464 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.042362 B = 0.002043 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.814333 B =13704.062987 C =13865.178505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.254 3.746 10 N -0.346 5.346 11 C 0.161 3.839 12 C -0.334 4.334 13 C 0.487 3.513 14 N -0.714 5.714 15 C 0.685 3.315 16 O -0.633 6.633 17 N -0.732 5.732 18 C 0.141 3.859 19 C -0.122 4.122 20 C -0.110 4.110 21 C 0.479 3.521 22 O -0.515 6.515 23 O -0.520 6.520 24 N -0.472 5.472 25 H 0.444 0.556 26 H 0.271 0.729 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.187 0.813 30 H 0.183 0.817 31 H 0.398 0.602 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.878 -16.833 -1.465 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.138 3.862 10 N -0.132 5.132 11 C 0.016 3.984 12 C -0.367 4.367 13 C 0.233 3.767 14 N -0.479 5.479 15 C 0.384 3.616 16 O -0.516 6.516 17 N -0.387 5.387 18 C 0.016 3.984 19 C -0.160 4.160 20 C -0.148 4.148 21 C 0.321 3.679 22 O -0.403 6.403 23 O -0.332 6.332 24 N -0.194 5.194 25 H 0.291 0.709 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.204 0.796 30 H 0.200 0.800 31 H 0.231 0.769 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 10.285 -16.237 -1.555 19.283 hybrid contribution 0.554 0.703 -0.796 1.198 sum 10.839 -15.534 -2.351 19.087 Atomic orbital electron populations 1.69907 1.06130 1.28158 1.48167 1.24958 0.95011 0.99746 0.93852 0.86245 0.80065 0.82072 0.78048 1.19392 1.20546 1.20415 1.21469 0.94136 0.89569 1.54349 0.91159 1.20038 0.85633 0.79849 1.00662 1.47972 1.39780 1.29143 0.96294 1.22801 0.91321 0.92122 0.92110 1.22390 1.11948 1.07193 0.95161 1.18702 0.83925 0.84454 0.89622 1.68038 1.25833 1.16954 1.37041 1.16597 0.80231 0.81006 0.83769 1.90726 1.70105 1.75599 1.15128 1.44629 1.48353 1.35585 1.10118 1.20972 0.92904 0.90051 0.94492 1.21629 0.99008 0.96888 0.98487 1.21261 1.00543 0.96758 0.96237 1.23578 0.75747 0.78545 0.90019 1.90748 1.59152 1.68663 1.21760 1.84545 1.57598 1.45667 1.45351 1.44445 1.42148 1.29343 1.03492 0.70890 0.91922 0.93107 0.91405 0.79650 0.80007 0.76865 0.91969 0.91984 0.90284 0.90280 0.87101 0.87120 0.73161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.54 13.29 55.43 0.74 -21.81 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 19.31 29.54 -169.99 -5.02 14.29 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.56 -13.28 9.39 -34.44 -0.32 -13.60 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.25 5.32 6.19 -5.20 -0.03 5.28 16 10 N -0.35 -6.46 3.63 -62.25 -0.23 -6.68 16 11 C 0.16 2.75 11.45 -16.66 -0.19 2.56 16 12 C -0.33 -6.30 9.52 -39.62 -0.38 -6.68 16 13 C 0.49 9.57 8.07 -155.29 -1.25 8.31 16 14 N -0.71 -14.26 10.59 -15.79 -0.17 -14.43 16 15 C 0.68 13.44 8.47 -87.76 -0.74 12.70 16 16 O -0.63 -13.71 13.26 5.06 0.07 -13.64 16 17 N -0.73 -11.03 5.56 -65.42 -0.36 -11.39 16 18 C 0.14 1.63 5.67 -4.04 -0.02 1.61 16 19 C -0.12 -1.06 4.62 -26.73 -0.12 -1.18 16 20 C -0.11 -0.71 5.81 -27.88 -0.16 -0.87 16 21 C 0.48 3.87 8.33 36.01 0.30 4.17 16 22 O -0.52 -5.97 16.74 -18.75 -0.31 -6.29 16 23 O -0.52 -3.09 13.42 -39.25 -0.53 -3.62 16 24 N -0.47 -8.51 7.38 31.33 0.23 -8.28 16 25 H 0.44 7.07 8.96 -182.55 -1.64 5.44 16 26 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.19 2.49 8.06 -52.49 -0.42 2.06 16 30 H 0.18 3.61 5.77 -52.48 -0.30 3.31 16 31 H 0.40 5.36 8.57 -40.82 -0.35 5.01 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.41 0.85 9.10 45.56 0.41 1.26 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -32.71 339.36 -8.72 -41.42 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.22 Total: 11.41 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: -3.03 Total: 13.89 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.21 Total: -62.59 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.77 Total: -23.54 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.71 -8.72 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563145929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.138 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds