Wall clock time and date at job start Tue Mar 31 2020 03:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99835 * 2 1 4 4 H 1.48505 * 109.46644 * 269.99388 * 3 2 1 5 5 H 1.48493 * 109.47316 * 29.99495 * 3 2 1 6 6 H 1.48500 * 109.47137 * 149.99795 * 3 2 1 7 7 C 1.37884 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00347 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99716 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.62620 * 56.89740 * 9 7 2 11 11 C 1.55141 * 110.70777 * 293.59993 * 9 7 2 12 12 C 1.54907 * 101.65258 * 205.96215 * 11 9 7 13 13 N 1.47838 * 104.79432 * 37.07116 * 12 11 9 14 14 C 1.46903 * 111.00280 * 213.63210 * 13 12 11 15 15 C 1.53004 * 109.47087 * 290.84773 * 14 13 12 16 16 N 1.46501 * 109.47038 * 179.97438 * 15 14 13 17 17 C 1.34949 * 126.03412 * 124.99569 * 16 15 14 18 18 C 1.35311 * 107.74301 * 180.02562 * 17 16 15 19 19 N 1.48026 * 126.03973 * 179.97438 * 18 17 16 20 20 O 1.21799 * 119.99956 * 0.02562 * 19 18 17 21 21 O 1.21802 * 120.00016 * 179.72330 * 19 18 17 22 22 C 1.39865 * 107.92267 * 0.26729 * 18 17 16 23 23 N 1.30841 * 108.20220 * 359.55106 * 22 18 17 24 24 C 1.47441 * 108.56904 * 335.90546 * 13 12 11 25 25 H 0.96994 * 120.00416 * 0.02562 * 1 2 3 26 26 H 0.96696 * 114.00446 * 303.10102 * 10 9 7 27 27 H 1.08994 * 110.99286 * 324.05627 * 11 9 7 28 28 H 1.09001 * 110.98917 * 87.83514 * 11 9 7 29 29 H 1.09001 * 110.37724 * 278.23891 * 12 11 9 30 30 H 1.08999 * 110.36771 * 155.89938 * 12 11 9 31 31 H 1.08997 * 109.47098 * 170.84282 * 14 13 12 32 32 H 1.08997 * 109.46614 * 50.84251 * 14 13 12 33 33 H 1.09002 * 109.47128 * 59.99612 * 15 14 13 34 34 H 1.09003 * 109.46641 * 299.99866 * 15 14 13 35 35 H 1.08001 * 126.12839 * 0.02562 * 17 16 15 36 36 H 1.08008 * 125.90171 * 179.73611 * 22 18 17 37 37 H 1.08997 * 109.89159 * 120.39736 * 24 13 12 38 38 H 1.09007 * 109.88688 * 241.42342 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.3673 -2.5702 -1.1201 11 6 0.4732 -2.6835 1.3301 12 6 0.3727 -4.2265 1.4225 13 7 1.6617 -4.7211 0.8937 14 6 1.4857 -5.9954 0.1844 15 6 1.1362 -7.0946 1.1897 16 7 0.9601 -8.3653 0.4822 17 6 1.6090 -9.5184 0.7477 18 6 1.1652 -10.4518 -0.1256 19 7 1.6099 -11.8621 -0.1936 20 8 2.4508 -12.2737 0.5855 21 8 1.1309 -12.6123 -1.0250 22 6 0.2171 -9.8471 -0.9572 23 7 0.0889 -8.5978 -0.5898 24 6 2.2284 -3.6934 0.0013 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2675 -1.8423 -1.1671 27 1 1.0355 -2.2777 2.1710 28 1 -0.5162 -2.2301 1.2696 29 1 -0.4530 -4.5904 0.8110 30 1 0.2437 -4.5369 2.4594 31 1 2.4102 -6.2550 -0.3311 32 1 0.6793 -5.8981 -0.5425 33 1 0.2116 -6.8350 1.7052 34 1 1.9426 -7.1918 1.9166 35 1 2.3497 -9.6692 1.5191 36 1 -0.3190 -10.3288 -1.7616 37 1 3.2023 -3.3754 0.3732 38 1 2.3296 -4.0934 -1.0077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:29 Heat of formation + Delta-G solvation = 13.615844 kcal Electronic energy + Delta-G solvation = -23432.660127 eV Core-core repulsion = 19700.672288 eV Total energy + Delta-G solvation = -3731.987839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.43106 -42.37339 -40.25022 -37.53254 -37.06616 -35.03390 -34.15084 -32.39008 -32.00561 -30.04820 -29.26278 -27.04280 -26.18826 -24.54457 -22.66058 -22.54923 -21.61833 -21.34105 -19.99596 -19.48570 -19.16503 -18.56160 -17.78663 -17.14668 -16.95022 -16.63387 -16.17092 -15.81397 -15.62425 -15.29106 -14.53739 -14.41955 -14.15564 -13.83479 -13.73201 -13.22474 -13.15136 -12.86878 -12.71034 -12.64209 -12.55491 -12.30644 -12.25848 -12.21453 -12.13695 -12.02738 -11.82788 -11.24065 -11.08746 -10.66989 -10.55504 -10.12428 -9.41955 -8.25156 -6.39559 -0.79706 0.21802 0.39105 1.17497 1.22752 1.39119 1.42143 1.50795 2.36421 2.79599 2.99892 3.20029 3.36416 3.56301 3.66776 3.83023 3.98172 4.00378 4.18061 4.24151 4.36238 4.47200 4.52613 4.60803 4.69720 4.80599 4.84619 5.07974 5.23794 5.23849 5.40254 5.44632 5.54207 5.77434 5.81629 5.96968 6.04856 6.13037 6.61338 6.65078 7.31221 7.40074 8.80266 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.046578 B = 0.002627 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.992122 B =10656.789368 C =10751.660741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.058 0.942 9 C 0.217 3.783 10 O -0.602 6.602 11 C -0.127 4.127 12 C 0.046 3.954 13 N -0.514 5.514 14 C 0.043 3.957 15 C 0.137 3.863 16 N -0.339 5.339 17 C 0.180 3.820 18 C -0.217 4.217 19 N 0.076 4.924 20 O -0.183 6.183 21 O -0.197 6.197 22 C 0.115 3.885 23 N -0.297 5.297 24 C 0.066 3.934 25 H 0.269 0.731 26 H 0.377 0.623 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.245 0.755 36 H 0.226 0.774 37 H 0.085 0.915 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 -15.482 4.692 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.595 4.595 8 H 0.076 0.924 9 C 0.176 3.824 10 O -0.412 6.412 11 C -0.166 4.166 12 C -0.081 4.081 13 N -0.238 5.238 14 C -0.086 4.086 15 C 0.018 3.982 16 N -0.117 5.117 17 C 0.024 3.976 18 C -0.315 4.315 19 N 0.587 4.413 20 O -0.395 6.395 21 O -0.404 6.404 22 C -0.075 4.075 23 N -0.116 5.116 24 C -0.061 4.061 25 H 0.079 0.921 26 H 0.228 0.772 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.124 0.876 34 H 0.172 0.828 35 H 0.261 0.739 36 H 0.242 0.758 37 H 0.103 0.897 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.341 -14.084 4.860 14.959 hybrid contribution -0.224 0.724 -0.835 1.128 sum 1.118 -13.360 4.025 13.998 Atomic orbital electron populations 1.69661 1.06873 1.28205 1.50849 1.25693 0.95803 1.02335 0.93375 0.85535 0.78823 0.79071 0.78053 1.20564 1.20678 1.19276 1.21894 0.93647 0.92043 1.51886 0.92403 1.20013 0.86764 0.92461 0.83114 1.86069 1.51746 1.52990 1.50366 1.22984 1.00237 0.94020 0.99322 1.23127 0.89576 0.95081 1.00328 1.63678 1.24086 1.02334 1.33684 1.22407 1.01103 0.89928 0.95142 1.22202 1.06361 0.76439 0.93202 1.49057 1.28187 1.09847 1.24607 1.23001 0.94264 0.83459 0.96856 1.21176 1.14448 0.84305 1.11601 1.42638 0.98241 1.01980 0.98480 1.94522 1.26839 1.80339 1.37775 1.94547 1.59380 1.53810 1.32711 1.24367 0.94601 0.89986 0.98515 1.77864 1.14080 1.16299 1.03350 1.22698 0.98225 0.90921 0.94293 0.92131 0.77180 0.92424 0.92969 0.94648 0.88213 0.90306 0.95388 0.87649 0.82846 0.73932 0.75801 0.89712 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.68 10.69 21.45 0.23 -47.45 16 2 C 0.03 1.43 5.28 84.66 0.45 1.88 16 3 Si 0.96 40.92 29.54 68.60 2.03 42.95 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.56 -28.67 8.21 25.60 0.21 -28.46 16 8 H 0.06 2.95 7.53 -2.91 -0.02 2.93 16 9 C 0.22 10.18 0.85 -10.36 -0.01 10.17 16 10 O -0.60 -30.76 13.09 -148.98 -1.95 -32.72 16 11 C -0.13 -5.38 5.67 31.98 0.18 -5.20 16 12 C 0.05 1.49 5.78 86.77 0.50 2.00 16 13 N -0.51 -15.81 5.16 -885.56 -4.57 -20.38 16 14 C 0.04 1.09 4.75 86.30 0.41 1.50 16 15 C 0.14 2.18 6.55 86.38 0.57 2.75 16 16 N -0.34 -5.86 3.68 -348.05 -1.28 -7.14 16 17 C 0.18 2.49 11.13 83.54 0.93 3.42 16 18 C -0.22 -4.10 7.11 36.09 0.26 -3.85 16 19 N 0.08 1.76 4.45 -47.13 -0.21 1.55 16 20 O -0.18 -4.37 19.02 18.89 0.36 -4.01 16 21 O -0.20 -5.06 19.05 18.88 0.36 -4.70 16 22 C 0.11 2.17 11.75 85.23 1.00 3.18 16 23 N -0.30 -6.57 12.42 -57.02 -0.71 -7.28 16 24 C 0.07 2.61 6.21 86.64 0.54 3.14 16 25 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 26 H 0.38 20.04 6.98 -74.06 -0.52 19.52 16 27 H 0.06 2.50 8.04 -2.39 -0.02 2.48 16 28 H 0.05 2.42 7.76 -2.39 -0.02 2.40 16 29 H 0.04 1.20 7.62 -2.39 -0.02 1.18 16 30 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.08 1.93 8.03 -2.39 -0.02 1.91 16 32 H 0.03 0.87 7.85 -2.39 -0.02 0.85 16 33 H 0.11 1.64 7.49 -2.39 -0.02 1.63 16 34 H 0.15 1.37 8.07 -2.39 -0.02 1.35 16 35 H 0.24 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.23 3.12 8.06 -2.91 -0.02 3.09 16 37 H 0.08 3.29 7.63 -2.39 -0.02 3.27 16 38 H 0.04 1.64 7.48 -2.38 -0.02 1.62 16 Total: -1.00 -62.58 328.77 -0.14 -62.72 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.58 Total: 25.94 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 5.03 Total: -9.49 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -6.54 Total: -80.70 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -1.23 Total: -41.42 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -62.58 -0.14 -62.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.336 kcal (2) G-P(sol) polarization free energy of solvation -62.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds