Wall clock time and date at job start Tue Mar 31 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00317 * 2 1 4 4 H 1.48503 * 109.47136 * 270.00027 * 3 2 1 5 5 H 1.48503 * 109.46902 * 30.00064 * 3 2 1 6 6 H 1.48500 * 109.47161 * 149.99966 * 3 2 1 7 7 C 1.38951 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99975 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00333 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00281 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99682 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00219 * 180.02562 * 10 9 7 13 13 N 1.46891 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99678 * 176.23951 * 13 12 10 15 15 H 1.08991 * 109.47522 * 321.61607 * 14 13 12 16 16 C 1.53003 * 109.47073 * 81.62099 * 14 13 12 17 17 C 1.53002 * 109.46967 * 59.21865 * 16 14 13 18 18 O 1.42911 * 109.46722 * 185.10649 * 17 16 14 19 19 C 1.50704 * 109.46930 * 201.61659 * 14 13 12 20 20 C 1.38223 * 120.01505 * 339.97916 * 19 14 13 21 21 C 1.38219 * 120.02707 * 180.02562 * 20 19 14 22 22 C 1.38270 * 120.05159 * 0.02562 * 21 20 19 23 23 C 1.38181 * 120.02367 * 359.97438 * 22 21 20 24 24 C 1.38440 * 120.01174 * 160.00491 * 19 14 13 25 25 F 1.35101 * 120.02676 * 359.95211 * 24 19 14 26 26 H 0.97006 * 119.99697 * 359.97438 * 1 2 3 27 27 H 0.97003 * 119.99860 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.46978 * 59.99848 * 12 10 9 29 29 H 1.08997 * 109.47009 * 299.99988 * 12 10 9 30 30 H 1.00898 * 111.00062 * 52.28881 * 13 12 10 31 31 H 1.08993 * 109.47022 * 179.21761 * 16 14 13 32 32 H 1.09000 * 109.46678 * 299.22378 * 16 14 13 33 33 H 1.09001 * 109.47359 * 305.10406 * 17 16 14 34 34 H 1.09002 * 109.47393 * 65.10709 * 17 16 14 35 35 H 0.96700 * 113.99198 * 180.02562 * 18 17 16 36 36 H 1.07997 * 119.98615 * 0.02562 * 20 19 14 37 37 H 1.08002 * 119.97791 * 180.02562 * 21 20 19 38 38 H 1.08002 * 119.98748 * 180.27645 * 22 21 20 39 39 H 1.07999 * 120.00896 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0001 12 6 1.2435 -4.8630 -0.0011 13 7 2.1980 -5.9795 -0.0016 14 6 1.4998 -7.2690 0.0878 15 1 0.6514 -7.1766 0.7656 16 6 1.0017 -7.6765 -1.3003 17 6 2.1908 -7.7873 -2.2567 18 8 1.7159 -8.0510 -3.5785 19 6 2.4476 -8.3182 0.6093 20 6 3.8129 -8.1176 0.5299 21 6 4.6823 -9.0800 1.0077 22 6 4.1876 -10.2447 1.5651 23 6 2.8231 -10.4474 1.6455 24 6 1.9511 -9.4837 1.1677 25 9 0.6168 -9.6807 1.2462 26 1 -0.4850 0.8401 0.0004 27 1 0.3532 -2.3906 -0.0005 28 1 0.6172 -4.9205 -0.8913 29 1 0.6165 -4.9209 0.8886 30 1 2.8709 -5.8803 0.7436 31 1 0.4958 -8.6398 -1.2364 32 1 0.3056 -6.9244 -1.6717 33 1 2.7498 -6.8516 -2.2514 34 1 2.8411 -8.6009 -1.9352 35 1 2.4173 -8.1342 -4.2390 36 1 4.2004 -7.2085 0.0944 37 1 5.7489 -8.9223 0.9456 38 1 4.8679 -10.9940 1.9422 39 1 2.4370 -11.3574 2.0806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592162356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:36 Heat of formation + Delta-G solvation = -106.433530 kcal Electronic energy + Delta-G solvation = -23613.046510 eV Core-core repulsion = 19855.932978 eV Total energy + Delta-G solvation = -3757.113532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.01968 -39.73096 -38.27010 -37.13771 -35.81247 -33.94275 -31.90498 -31.17666 -30.79124 -30.02562 -26.96751 -25.14281 -24.02728 -22.61223 -22.46268 -20.00107 -19.30659 -18.02078 -17.67202 -17.36071 -16.76412 -16.42129 -15.76365 -15.53383 -15.41293 -14.78860 -14.69076 -14.40357 -14.20229 -13.94123 -13.71514 -13.47152 -13.11019 -12.90028 -12.61709 -12.36013 -12.03276 -11.82537 -11.70350 -11.54479 -11.44194 -11.10727 -11.04732 -10.62152 -10.40593 -10.23252 -9.80599 -9.52685 -9.09533 -8.82453 -8.48147 -8.19177 -7.98214 -6.43056 -3.84072 0.97366 1.05019 3.17018 3.25838 3.31306 3.41706 3.87451 3.95392 4.13625 4.23061 4.32485 4.44899 4.66215 4.81494 5.02902 5.08740 5.19178 5.20760 5.25172 5.35285 5.46048 5.56479 5.71206 5.78778 5.84976 5.90399 5.92272 5.99021 6.11532 6.20433 6.21508 6.27443 6.28318 6.72600 7.11258 7.53678 7.54592 7.72512 8.04187 8.58814 9.15851 9.52250 10.02879 10.74575 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.020697 B = 0.003333 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.517807 B = 8397.850261 C = 8730.634670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.441 3.559 11 O -0.586 6.586 12 C 0.048 3.952 13 N -0.661 5.661 14 C 0.129 3.871 15 H 0.062 0.938 16 C -0.101 4.101 17 C 0.080 3.920 18 O -0.581 6.581 19 C -0.117 4.117 20 C -0.078 4.078 21 C -0.129 4.129 22 C -0.096 4.096 23 C -0.157 4.157 24 C 0.101 3.899 25 F -0.138 7.138 26 H 0.272 0.728 27 H 0.393 0.607 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.354 0.646 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.376 0.624 36 H 0.149 0.851 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.905 -19.813 1.147 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.471 6.471 12 C -0.084 4.084 13 N -0.295 5.295 14 C 0.019 3.981 15 H 0.079 0.921 16 C -0.139 4.139 17 C 0.003 3.997 18 O -0.387 6.387 19 C -0.118 4.118 20 C -0.096 4.096 21 C -0.148 4.148 22 C -0.114 4.114 23 C -0.176 4.176 24 C 0.082 3.918 25 F -0.117 7.117 26 H 0.082 0.918 27 H 0.226 0.774 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.175 0.825 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.222 0.778 36 H 0.167 0.833 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.001 -19.621 0.796 20.040 hybrid contribution -0.275 0.753 0.734 1.087 sum 3.726 -18.867 1.530 19.293 Atomic orbital electron populations 1.69613 1.05959 1.28211 1.50375 1.25271 0.95631 0.99756 0.97242 0.85854 0.79209 0.80775 0.78421 1.20362 1.20932 1.19416 1.19701 0.93365 0.82204 1.47725 0.87893 1.41855 1.09252 1.04597 1.64058 1.19738 0.88333 0.84674 0.84608 1.90511 1.13702 1.87062 1.55780 1.21754 0.94478 0.90678 1.01523 1.60307 1.16443 0.99117 1.53667 1.20316 0.93947 0.87962 0.95899 0.92070 1.21420 0.97921 1.01865 0.92692 1.22167 0.95946 1.00126 0.81495 1.86424 1.38086 1.95193 1.18964 1.20009 0.95620 0.95163 1.01050 1.21195 0.91383 0.99936 0.97086 1.21278 1.00382 0.93941 0.99160 1.21023 0.94266 0.97689 0.98447 1.21090 0.93692 0.99494 1.03310 1.17543 0.77380 0.95484 1.01411 1.91491 1.30701 1.95175 1.94306 0.91828 0.77408 0.89308 0.93560 0.82503 0.91494 0.90469 0.91200 0.94485 0.77798 0.83321 0.85209 0.85238 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C 0.44 10.22 7.81 -10.98 -0.09 10.13 16 11 O -0.59 -15.40 15.69 5.54 0.09 -15.31 16 12 C 0.05 0.84 5.99 -4.98 -0.03 0.81 16 13 N -0.66 -10.21 4.32 -109.22 -0.47 -10.69 16 14 C 0.13 1.71 2.24 -68.86 -0.15 1.55 16 15 H 0.06 0.82 7.60 -51.93 -0.39 0.43 16 16 C -0.10 -1.35 5.38 -26.73 -0.14 -1.49 16 17 C 0.08 1.05 6.42 37.16 0.24 1.29 16 18 O -0.58 -7.69 13.66 -35.23 -0.48 -8.17 16 19 C -0.12 -1.42 4.13 -104.55 -0.43 -1.85 16 20 C -0.08 -0.87 8.08 -39.59 -0.32 -1.19 16 21 C -0.13 -1.20 10.04 -39.58 -0.40 -1.60 16 22 C -0.10 -0.82 10.04 -39.59 -0.40 -1.22 16 23 C -0.16 -1.52 10.03 -39.51 -0.40 -1.91 16 24 C 0.10 1.19 7.24 -39.42 -0.29 0.91 16 25 F -0.14 -1.75 16.66 2.25 0.04 -1.71 16 26 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 28 H 0.09 1.47 7.34 -51.93 -0.38 1.09 16 29 H 0.05 0.74 7.97 -51.93 -0.41 0.33 16 30 H 0.35 5.66 6.75 -39.29 -0.27 5.40 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.09 7.34 -51.93 -0.38 0.71 16 33 H 0.07 1.02 7.42 -51.93 -0.39 0.63 16 34 H 0.04 0.45 6.99 -51.93 -0.36 0.09 16 35 H 0.38 3.27 9.12 45.56 0.42 3.69 16 36 H 0.15 1.78 6.77 -52.49 -0.36 1.42 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -31.71 335.12 -6.83 -38.54 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -4.05 Total: 16.84 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.64 Total: -2.53 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.19 Total: -48.65 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.39 Total: -23.48 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.71 -6.83 -38.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592162356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.894 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds