Wall clock time and date at job start Tue Mar 31 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.54893 * 129.08875 * 299.66317 * 5 3 2 7 7 C 1.57170 * 77.91687 * 180.16176 * 6 5 3 8 8 C 1.50699 * 129.24707 * 179.19530 * 7 6 5 9 9 O 1.21280 * 120.00036 * 241.27902 * 8 7 6 10 10 N 1.34779 * 120.00003 * 61.28220 * 8 7 6 11 11 C 1.46502 * 119.99725 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46857 * 180.02562 * 11 10 8 13 13 O 1.21293 * 120.00095 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99899 * 180.02562 * 12 11 10 15 15 C 1.37100 * 119.99881 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00033 * 0.02562 * 15 14 12 17 17 C 1.38953 * 119.99850 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99920 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99873 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47044 * 89.99709 * 19 17 15 21 21 H 1.48501 * 109.46946 * 209.99567 * 19 17 15 22 22 H 1.48497 * 109.46966 * 329.99304 * 19 17 15 23 23 C 1.54406 * 129.01792 * 179.72165 * 5 3 2 24 24 C 1.54892 * 83.77187 * 317.35299 * 7 6 5 25 25 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 26 26 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 27 27 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.09005 * 114.97289 * 291.95403 * 6 5 3 29 29 H 1.09001 * 114.98274 * 67.12277 * 6 5 3 30 30 H 0.97002 * 120.00341 * 0.02562 * 10 8 7 31 31 H 1.08991 * 109.47171 * 300.00145 * 11 10 8 32 32 H 1.08999 * 109.46823 * 60.00922 * 11 10 8 33 33 H 0.97001 * 119.99985 * 359.97438 * 14 12 11 34 34 H 0.96995 * 119.99919 * 180.02562 * 18 17 15 35 35 H 1.09005 * 114.93284 * 293.13167 * 23 5 3 36 36 H 1.08998 * 114.93446 * 68.09341 * 23 5 3 37 37 H 1.09001 * 116.12289 * 290.12683 * 24 7 6 38 38 H 1.08993 * 113.83453 * 154.96206 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.5772 0.7298 1.0330 7 6 5.5248 1.3926 -0.0314 8 6 7.0283 1.4941 -0.0374 9 8 7.5626 2.5829 -0.0275 10 7 7.7793 0.3751 -0.0540 11 6 9.2409 0.4739 -0.0604 12 6 9.8378 -0.9098 -0.0798 13 8 9.1135 -1.8827 -0.0870 14 7 11.1765 -1.0662 -0.0881 15 6 11.7195 -2.3249 -0.1052 16 1 11.0745 -3.1912 -0.1125 17 6 13.0996 -2.4862 -0.1142 18 7 13.6201 -3.6927 -0.1301 19 14 14.2150 -0.9878 -0.1024 20 1 14.5178 -0.6072 1.3007 21 1 15.4796 -1.3065 -0.8127 22 1 13.5344 0.1413 -0.7858 23 6 4.4741 2.5240 -0.0132 24 6 4.5689 0.7241 -1.0505 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 4.5583 1.2315 2.0005 29 1 4.6266 -0.3570 1.1009 30 1 7.3520 -0.4957 -0.0624 31 1 9.5642 1.0211 -0.9458 32 1 9.5734 1.0008 0.8340 33 1 11.7557 -0.2881 -0.0819 34 1 14.5834 -3.8052 -0.1361 35 1 4.4266 3.1215 -0.9236 36 1 4.4497 3.1149 0.9023 37 1 4.6178 -0.3630 -1.1128 38 1 4.5423 1.2205 -2.0205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592633227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:40 Heat of formation + Delta-G solvation = -49.456376 kcal Electronic energy + Delta-G solvation = -22939.605225 eV Core-core repulsion = 19172.589617 eV Total energy + Delta-G solvation = -3767.015607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.60789 -40.37286 -39.27324 -38.15758 -36.78790 -34.60420 -33.81259 -31.84648 -29.04666 -28.34735 -26.23875 -26.16013 -26.03917 -24.46417 -22.74176 -20.32926 -19.74866 -19.15673 -18.43600 -17.83732 -17.46712 -16.71143 -16.26160 -15.67526 -15.46290 -15.34896 -14.82982 -14.71910 -14.60488 -14.16693 -14.03041 -13.60893 -13.31337 -13.04819 -12.57472 -12.48328 -12.26113 -12.24297 -11.90780 -11.72364 -11.57913 -11.26855 -11.19822 -11.03920 -10.72870 -10.67602 -10.66620 -10.10092 -9.88483 -9.73852 -9.01198 -8.82875 -8.34634 -6.44378 -3.97209 1.66565 2.16919 2.38628 2.96606 3.01228 3.06008 3.11308 3.50821 3.70159 3.80343 3.94319 4.00266 4.06860 4.16522 4.40216 4.50043 4.72373 4.80310 4.85204 5.10210 5.14713 5.17080 5.24321 5.38501 5.48202 5.55423 5.57776 5.61034 5.68358 5.73739 5.74030 5.94917 6.43411 7.36286 7.39704 7.61837 7.95808 8.22772 8.41064 8.77708 9.25634 9.58426 10.67654 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.034579 B = 0.002629 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.534554 B =10647.202288 C =11308.913517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.528 3.472 4 O -0.498 6.498 5 C -0.153 4.153 6 C -0.077 4.077 7 C -0.155 4.155 8 C 0.577 3.423 9 O -0.537 6.537 10 N -0.698 5.698 11 C 0.106 3.894 12 C 0.437 3.563 13 O -0.578 6.578 14 N -0.575 5.575 15 C -0.311 4.311 16 H 0.122 0.878 17 C 0.045 3.955 18 N -0.873 5.873 19 Si 0.879 3.121 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.059 4.059 24 C -0.075 4.075 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.414 0.586 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.375 0.625 34 H 0.276 0.724 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.087 9.513 0.298 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.266 6.266 3 C 0.370 3.630 4 O -0.385 6.385 5 C -0.154 4.154 6 C -0.114 4.114 7 C -0.158 4.158 8 C 0.361 3.639 9 O -0.415 6.415 10 N -0.352 5.352 11 C -0.022 4.022 12 C 0.223 3.777 13 O -0.463 6.463 14 N -0.213 5.213 15 C -0.439 4.439 16 H 0.140 0.860 17 C -0.159 4.159 18 N -0.512 5.512 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.096 4.096 24 C -0.113 4.113 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.253 0.747 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.208 0.792 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.180 9.754 0.298 22.416 hybrid contribution 0.631 0.675 -0.012 0.924 sum -19.550 10.429 0.286 22.159 Atomic orbital electron populations 1.23340 0.75748 1.04054 1.02700 1.86507 1.23653 1.32721 1.83755 1.21382 0.88240 0.81372 0.71989 1.90689 1.66309 1.36544 1.44916 1.23273 0.87146 1.02329 1.02633 1.24548 0.89266 1.01611 0.95991 1.24108 0.91371 1.00115 1.00202 1.18298 0.85177 0.84025 0.76386 1.90717 1.73218 1.27451 1.50076 1.45569 1.06361 1.09707 1.73528 1.21027 0.80455 0.97147 1.03576 1.19594 0.83181 0.89704 0.85228 1.90544 1.59508 1.40493 1.55736 1.42126 1.05229 1.08647 1.65262 1.19440 0.91715 0.84017 1.48748 0.86039 1.25075 0.96732 0.97011 0.97082 1.69614 1.12806 1.20794 1.47961 0.86670 0.81344 0.82311 0.79165 1.19367 1.19957 1.19215 1.23669 0.88380 0.93626 1.03944 1.24078 0.89334 1.01612 0.96254 0.91715 0.91707 0.87719 0.89260 0.88448 0.74746 0.89483 0.89461 0.79219 0.91339 0.89364 0.89297 0.88403 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.25 10.57 -39.26 -0.41 -3.66 16 3 C 0.53 5.59 8.07 36.00 0.29 5.88 16 4 O -0.50 -6.45 16.84 -18.76 -0.32 -6.76 16 5 C -0.15 -1.45 3.47 -172.26 -0.60 -2.05 16 6 C -0.08 -0.69 7.95 -24.72 -0.20 -0.88 16 7 C -0.15 -1.67 3.50 -170.99 -0.60 -2.27 16 8 C 0.58 8.19 7.94 -10.99 -0.09 8.11 16 9 O -0.54 -9.28 17.10 5.56 0.10 -9.19 16 10 N -0.70 -10.33 5.53 -61.47 -0.34 -10.67 16 11 C 0.11 1.72 6.15 -5.19 -0.03 1.69 16 12 C 0.44 9.20 7.85 -10.98 -0.09 9.11 16 13 O -0.58 -14.02 15.24 5.55 0.08 -13.94 16 14 N -0.58 -12.96 5.09 -10.96 -0.06 -13.02 16 15 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 16 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 17 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 18 N -0.87 -24.53 13.96 55.50 0.77 -23.76 16 19 Si 0.88 18.61 27.74 -169.99 -4.71 13.90 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 23 C -0.06 -0.59 7.77 -26.72 -0.21 -0.80 16 24 C -0.08 -0.68 7.84 -25.98 -0.20 -0.88 16 25 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 26 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.74 7.91 -51.93 -0.41 0.33 16 29 H 0.10 0.78 7.97 -51.93 -0.41 0.36 16 30 H 0.41 6.01 7.44 -40.82 -0.30 5.70 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.37 7.43 5.76 -40.82 -0.24 7.19 16 34 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.09 0.86 7.94 -51.93 -0.41 0.45 16 36 H 0.09 0.87 7.91 -51.93 -0.41 0.46 16 37 H 0.10 0.78 7.97 -51.93 -0.41 0.37 16 38 H 0.09 0.74 7.93 -51.93 -0.41 0.33 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -33.23 336.76 -5.39 -38.62 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -4.68 Total: 11.62 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -0.90 Total: 11.77 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.38 Total: -47.44 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.55 Total: -33.55 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.71 Total: 13.90 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.23 -5.39 -38.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592633227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.833 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds