Wall clock time and date at job start Tue Mar 31 2020 03:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35983 * 117.00434 * 2 1 4 4 C 1.40101 * 125.82724 * 180.02562 * 3 2 1 5 5 C 1.36170 * 107.81623 * 180.02562 * 4 3 2 6 6 N 1.39184 * 126.22712 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99890 * 359.97438 * 6 5 4 8 8 O 1.21388 * 120.00272 * 359.97438 * 7 6 5 9 9 C 1.49307 * 119.99515 * 180.02562 * 7 6 5 10 10 O 1.21367 * 119.99908 * 5.79155 * 9 7 6 11 11 N 1.34777 * 119.99937 * 185.78460 * 9 7 6 12 12 C 1.46495 * 119.99672 * 5.67807 * 11 9 7 13 13 C 1.46495 * 120.00015 * 185.68079 * 11 9 7 14 14 H 1.08999 * 109.47226 * 0.02562 * 13 11 9 15 15 C 1.53000 * 109.47202 * 239.99965 * 13 11 9 16 16 C 1.50702 * 109.47061 * 120.00229 * 13 11 9 17 17 H 1.08001 * 120.00462 * 5.65258 * 16 13 11 18 18 C 1.37877 * 119.99960 * 185.65822 * 16 13 11 19 19 N 1.31513 * 120.00386 * 197.81788 * 18 16 13 20 20 Si 1.86801 * 120.00158 * 18.09628 * 18 16 13 21 21 H 1.48496 * 109.47376 * 179.72389 * 20 18 16 22 22 H 1.48502 * 109.47079 * 299.72629 * 20 18 16 23 23 H 1.48505 * 109.47249 * 59.72547 * 20 18 16 24 24 N 1.35867 * 107.54303 * 0.23801 * 5 4 3 25 25 H 0.97002 * 126.05465 * 179.75661 * 24 5 4 26 26 N 1.31136 * 125.82631 * 0.02892 * 3 2 1 27 27 H 1.09002 * 109.47261 * 59.99410 * 1 2 3 28 28 H 1.08992 * 109.47451 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47046 * 300.00619 * 1 2 3 30 30 H 1.08001 * 126.09004 * 0.02562 * 4 3 2 31 31 H 0.96999 * 119.99352 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47801 * 275.61314 * 12 11 9 33 33 H 1.09001 * 109.47227 * 35.62281 * 12 11 9 34 34 H 1.09003 * 109.46989 * 155.62031 * 12 11 9 35 35 H 1.09003 * 109.46972 * 294.27647 * 15 13 11 36 36 H 1.09000 * 109.47037 * 54.27087 * 15 13 11 37 37 H 1.08999 * 109.47243 * 174.27185 * 15 13 11 38 38 H 0.97006 * 119.99722 * 355.23912 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4308 1.4265 -0.0005 5 6 3.6437 2.7714 0.0003 6 7 4.8812 3.4084 0.0006 7 6 6.0145 2.6789 0.0007 8 8 5.9560 1.4664 0.0009 9 6 7.3420 3.3623 0.0016 10 8 7.4029 4.5697 0.1084 11 7 8.4727 2.6382 -0.1160 12 6 8.3968 1.1974 -0.3692 13 6 9.7776 3.2922 0.0096 14 1 9.6342 4.3566 0.1955 15 6 10.5699 3.1023 -1.2855 16 6 10.5378 2.6800 1.1578 17 1 10.1336 1.8243 1.6781 18 6 11.7495 3.2126 1.5443 19 7 12.5731 2.5037 2.2851 20 14 12.2179 4.9439 1.0222 21 1 13.5571 5.2804 1.5685 22 1 12.2544 5.0211 -0.4603 23 1 11.2146 5.9067 1.5435 24 7 2.4282 3.3784 0.0066 25 1 2.2678 4.3351 0.0119 26 7 1.4476 2.3782 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8900 30 1 4.1933 0.6616 -0.0014 31 1 4.9279 4.3772 0.0008 32 1 8.2692 0.6685 0.5753 33 1 7.5486 0.9872 -1.0208 34 1 9.3161 0.8641 -0.8507 35 1 10.8011 2.0454 -1.4183 36 1 9.9760 3.4532 -2.1294 37 1 11.4969 3.6731 -1.2312 38 1 12.3003 1.6341 2.6172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599968473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:40 Heat of formation + Delta-G solvation = -0.927784 kcal Electronic energy + Delta-G solvation = -23777.815493 eV Core-core repulsion = 20045.196994 eV Total energy + Delta-G solvation = -3732.618498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82001 -40.47338 -38.65255 -38.08921 -36.16669 -34.84226 -32.83700 -31.04233 -30.39054 -29.48802 -27.49264 -26.54549 -25.29694 -24.62507 -22.08983 -21.78817 -20.33894 -19.67450 -18.59144 -17.65748 -17.06727 -17.05482 -16.55182 -16.40042 -15.91620 -15.73104 -15.02027 -14.65684 -14.22398 -14.06879 -13.83055 -13.60594 -13.29502 -12.89619 -12.68844 -12.22746 -12.16047 -11.88846 -11.80321 -11.75499 -11.41230 -11.15400 -10.90321 -10.72684 -10.59755 -10.02781 -9.85934 -9.23181 -9.14188 -8.90503 -8.46529 -8.41533 -8.02251 -6.59976 -4.24788 1.14694 1.80517 1.94600 2.55636 2.69913 3.25297 3.30037 3.40544 3.41692 3.53788 3.79148 4.36883 4.43427 4.57238 5.01009 5.02618 5.12412 5.24370 5.25468 5.41761 5.62958 5.77801 6.05071 6.18263 6.24765 6.29715 6.37884 6.45079 6.63640 6.77948 6.84033 7.02853 7.13952 7.16942 7.47818 7.55704 7.66780 7.99254 8.22361 8.29152 8.76015 9.44235 10.78872 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.034211 B = 0.003244 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.254411 B = 8630.376435 C = 8998.218060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.287 6.287 3 C 0.279 3.721 4 C -0.279 4.279 5 C 0.339 3.661 6 N -0.629 5.629 7 C 0.516 3.484 8 O -0.475 6.475 9 C 0.501 3.499 10 O -0.536 6.536 11 N -0.542 5.542 12 C 0.084 3.916 13 C 0.233 3.767 14 H 0.058 0.942 15 C -0.164 4.164 16 C -0.617 4.617 17 H 0.064 0.936 18 C 0.039 3.961 19 N -0.895 5.895 20 Si 1.039 2.961 21 H -0.282 1.282 22 H -0.271 1.271 23 H -0.278 1.278 24 N -0.481 5.481 25 H 0.442 0.558 26 N -0.337 5.337 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.182 0.818 31 H 0.426 0.574 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.239 -0.170 -6.944 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.074 3.926 4 C -0.311 4.311 5 C 0.117 3.883 6 N -0.279 5.279 7 C 0.299 3.701 8 O -0.345 6.345 9 C 0.281 3.719 10 O -0.416 6.416 11 N -0.272 5.272 12 C -0.059 4.059 13 C 0.132 3.868 14 H 0.076 0.924 15 C -0.222 4.222 16 C -0.655 4.655 17 H 0.082 0.918 18 C -0.168 4.168 19 N -0.528 5.528 20 Si 0.867 3.133 21 H -0.208 1.208 22 H -0.198 1.198 23 H -0.204 1.204 24 N -0.201 5.201 25 H 0.287 0.713 26 N -0.179 5.179 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.199 0.801 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.865 0.847 -6.813 20.075 hybrid contribution -0.909 -0.518 0.110 1.051 sum -19.774 0.330 -6.702 20.881 Atomic orbital electron populations 1.22979 0.77693 1.03548 1.02085 1.86325 1.22018 1.21445 1.89293 1.20313 0.91364 0.85067 0.95815 1.20910 0.94156 0.94056 1.21969 1.17878 0.80151 0.90563 0.99670 1.42620 1.01846 1.11856 1.71601 1.20818 0.85255 0.87381 0.76689 1.90697 1.86382 1.13434 1.43978 1.19358 0.84355 0.87232 0.80970 1.90730 1.86492 1.13182 1.51146 1.47999 1.05980 1.09523 1.63674 1.21968 1.02417 0.79733 1.01777 1.19453 0.77305 0.95065 0.95002 0.92421 1.22547 1.00633 1.01973 0.97056 1.22137 1.07565 1.18094 1.17673 0.91778 1.25690 0.92022 1.03795 0.95286 1.70870 1.34217 1.13410 1.34326 0.84132 0.76785 0.75540 0.76827 1.20791 1.19796 1.20409 1.45768 1.00699 1.08526 1.65068 0.71313 1.77429 1.10818 0.95035 1.34648 0.92499 0.88200 0.92471 0.80130 0.73636 0.92180 0.90638 0.90799 0.92736 0.95160 0.91273 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.69 101.05 1.08 1.35 16 2 O -0.29 -3.59 10.58 -19.69 -0.21 -3.80 16 3 C 0.28 3.82 7.88 -17.15 -0.14 3.68 16 4 C -0.28 -4.01 9.66 -39.63 -0.38 -4.39 16 5 C 0.34 4.27 8.10 -152.87 -1.24 3.03 16 6 N -0.63 -7.80 5.40 -11.81 -0.06 -7.87 16 7 C 0.52 8.07 7.66 -11.65 -0.09 7.98 16 8 O -0.47 -7.84 10.51 5.46 0.06 -7.78 16 9 C 0.50 9.38 7.72 -11.65 -0.09 9.29 16 10 O -0.54 -10.87 15.83 5.48 0.09 -10.78 16 11 N -0.54 -10.94 2.75 -175.83 -0.48 -11.43 16 12 C 0.08 1.47 8.36 59.84 0.50 1.98 16 13 C 0.23 5.34 2.21 -69.08 -0.15 5.19 16 14 H 0.06 1.41 5.56 -51.93 -0.29 1.12 16 15 C -0.16 -3.36 8.74 37.16 0.32 -3.03 16 16 C -0.62 -16.40 8.67 -34.44 -0.30 -16.69 16 17 H 0.06 1.84 7.80 -52.49 -0.41 1.43 16 18 C 0.04 1.07 5.34 -17.82 -0.10 0.97 16 19 N -0.90 -26.26 13.70 55.43 0.76 -25.50 16 20 Si 1.04 24.07 26.45 -169.99 -4.50 19.57 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -5.69 5.51 56.52 0.31 -5.38 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 N -0.48 -5.09 7.40 31.21 0.23 -4.86 16 25 H 0.44 3.04 8.96 -182.62 -1.64 1.40 16 26 N -0.34 -4.27 12.08 30.53 0.37 -3.90 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.18 2.79 5.82 -52.49 -0.31 2.49 16 31 H 0.43 4.29 8.30 -40.82 -0.34 3.95 16 32 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 33 H 0.08 1.18 6.00 -51.93 -0.31 0.87 16 34 H 0.07 1.27 6.55 -51.93 -0.34 0.93 16 35 H 0.05 1.08 6.89 -51.93 -0.36 0.72 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 1.45 4.85 -51.93 -0.25 1.19 16 38 H 0.27 7.89 8.73 -40.82 -0.36 7.54 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -31.90 319.56 -5.10 -37.00 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.59 Total: 5.18 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -0.58 Total: 9.36 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.81 Total: -53.55 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.06 Total: -22.37 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -4.50 Total: 19.57 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.90 -5.10 -37.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599968473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.074 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds