Wall clock time and date at job start Tue Mar 31 2020 03:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46509 * 109.47054 * 2 1 4 4 C 1.46497 * 120.00054 * 264.99792 * 3 2 1 5 5 C 1.50706 * 109.46871 * 263.14785 * 4 3 2 6 6 H 1.07997 * 119.99956 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99795 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99919 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99746 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47432 * 60.00092 * 9 7 5 11 11 H 1.48507 * 109.47223 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47348 * 299.99712 * 9 7 5 13 13 C 1.34769 * 119.99812 * 84.99846 * 3 2 1 14 14 O 1.21366 * 120.00577 * 4.02915 * 13 3 2 15 15 C 1.49309 * 120.00264 * 184.03341 * 13 3 2 16 16 O 1.21399 * 119.99461 * 354.69542 * 15 13 3 17 17 N 1.34775 * 120.00516 * 174.69836 * 15 13 3 18 18 C 1.39177 * 120.00154 * 179.97438 * 17 15 13 19 19 C 1.36175 * 126.22957 * 359.72260 * 18 17 15 20 20 C 1.40096 * 107.81598 * 179.97438 * 19 18 17 21 21 O 1.35991 * 125.82350 * 180.02562 * 20 19 18 22 22 C 1.42896 * 116.99664 * 179.97438 * 21 20 19 23 23 N 1.31133 * 108.35147 * 0.02562 * 20 19 18 24 24 N 1.35865 * 126.22930 * 179.41640 * 18 17 15 25 25 H 0.97000 * 126.05310 * 359.97438 * 24 18 17 26 26 H 1.08996 * 109.47307 * 59.99854 * 1 2 3 27 27 H 1.08998 * 109.47129 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47182 * 300.00098 * 1 2 3 29 29 H 1.08999 * 109.47339 * 240.00660 * 2 1 3 30 30 H 1.09001 * 109.47745 * 120.00117 * 2 1 3 31 31 H 1.09000 * 109.47363 * 23.13867 * 4 3 2 32 32 H 1.09000 * 109.47416 * 143.14826 * 4 3 2 33 33 H 0.96999 * 120.00144 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99573 * 359.72173 * 17 15 13 35 35 H 1.08001 * 126.08795 * 359.94338 * 19 18 17 36 36 H 1.09000 * 109.47279 * 179.97438 * 22 21 20 37 37 H 1.09002 * 109.47663 * 300.00259 * 22 21 20 38 38 H 1.09003 * 109.47056 * 60.00405 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3667 2.0350 -1.2639 5 6 3.8532 1.9316 -1.4898 6 1 4.4760 1.4296 -0.7642 7 6 4.4181 2.4789 -2.6222 8 7 3.6597 3.0907 -3.5055 9 14 6.2606 2.3514 -2.9019 10 1 6.6546 0.9208 -2.9599 11 1 6.6139 3.0139 -4.1831 12 1 6.9780 3.0175 -1.7853 13 6 2.1469 2.0505 1.1627 14 8 1.9285 1.4865 2.2150 15 6 2.5581 3.4858 1.1565 16 8 2.8697 4.0234 0.1135 17 7 2.5835 4.1846 2.3086 18 6 2.9673 5.5224 2.3028 19 6 3.3454 6.2465 1.2133 20 6 3.6485 7.5443 1.6452 21 8 4.0651 8.5694 0.8546 22 6 4.3215 9.8204 1.4959 23 7 3.4620 7.6020 2.9420 24 7 3.0275 6.3452 3.3823 25 1 2.8098 6.1046 4.2964 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8399 1.5460 -2.0833 32 1 2.0779 3.0852 -1.2215 33 1 4.0570 3.4755 -4.3023 34 1 2.3307 3.7562 3.1414 35 1 3.4019 5.8846 0.1973 36 1 4.6465 10.5494 0.7536 37 1 3.4108 10.1745 1.9790 38 1 5.1033 9.6914 2.2445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599972403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:48 Heat of formation + Delta-G solvation = 0.464496 kcal Electronic energy + Delta-G solvation = -24255.232546 eV Core-core repulsion = 20522.674421 eV Total energy + Delta-G solvation = -3732.558125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45047 -40.13713 -38.37934 -37.74893 -35.84326 -34.30977 -32.69259 -30.74516 -30.56763 -29.14946 -27.24210 -27.07873 -25.08762 -23.04872 -22.57234 -21.47349 -20.63019 -19.40073 -18.41576 -16.89964 -16.74637 -16.62910 -16.16040 -15.98351 -15.46788 -15.31743 -14.83009 -14.33177 -14.32098 -13.92271 -13.74475 -13.38477 -13.22508 -12.97881 -12.39752 -12.07477 -11.96296 -11.76185 -11.64468 -11.48184 -10.99440 -10.87969 -10.73088 -10.58078 -10.49105 -10.39500 -9.98738 -9.71920 -8.84943 -8.58863 -8.31751 -8.06813 -7.88132 -6.04243 -4.08016 1.57703 2.14268 2.26993 2.86652 3.04110 3.33614 3.38447 3.41058 3.54606 3.76930 4.06680 4.44710 4.78735 4.90451 5.25369 5.25477 5.32261 5.45663 5.50528 5.62186 5.62654 5.73011 5.76839 6.06621 6.10482 6.21395 6.48190 6.61565 6.67314 7.00014 7.25802 7.36021 7.45772 7.50317 7.80955 7.83140 8.02348 8.13793 8.20951 8.52109 8.93036 9.55839 11.04334 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.005735 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.349281 B = 4881.229603 C = 6691.995191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 N -0.553 5.553 4 C 0.219 3.781 5 C -0.525 4.525 6 H 0.054 0.946 7 C 0.072 3.928 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.514 3.486 14 O -0.560 6.560 15 C 0.496 3.504 16 O -0.413 6.413 17 N -0.638 5.638 18 C 0.343 3.657 19 C -0.279 4.279 20 C 0.280 3.720 21 O -0.286 6.286 22 C 0.033 3.967 23 N -0.345 5.345 24 N -0.486 5.486 25 H 0.438 0.562 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.264 0.736 34 H 0.419 0.581 35 H 0.186 0.814 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 4.324 10.930 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.283 5.283 4 C 0.100 3.900 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.131 4.131 8 N -0.525 5.525 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.296 3.704 14 O -0.442 6.442 15 C 0.277 3.723 16 O -0.278 6.278 17 N -0.289 5.289 18 C 0.122 3.878 19 C -0.310 4.310 20 C 0.076 3.924 21 O -0.189 6.189 22 C -0.062 4.062 23 N -0.187 5.187 24 N -0.206 5.206 25 H 0.283 0.717 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.256 0.744 35 H 0.203 0.797 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.656 5.229 10.984 12.703 hybrid contribution 0.887 -0.676 0.230 1.139 sum -2.769 4.553 11.214 12.415 Atomic orbital electron populations 1.22119 0.96176 1.01761 1.02252 1.21464 0.93826 0.82604 1.03269 1.48325 1.58562 1.13067 1.08355 1.20179 0.96535 0.95468 0.77804 1.21172 0.91973 1.37013 1.06209 0.92776 1.24799 0.97924 0.94658 0.95756 1.69895 1.35362 1.36433 1.10799 0.86639 0.85596 0.78080 0.77579 1.20403 1.21148 1.20165 1.19370 0.79919 0.86350 0.84786 1.90665 1.53162 1.69363 1.30999 1.20486 0.80335 0.88460 0.83014 1.90907 1.38888 1.69115 1.28857 1.42669 1.66619 1.06969 1.12625 1.17854 0.98227 0.83185 0.88580 1.21056 1.18088 0.90516 1.01356 1.20330 0.94663 0.89012 0.88429 1.86358 1.81763 1.18594 1.32196 1.22945 1.01106 0.83220 0.98963 1.77367 1.30547 0.99744 1.11037 1.45706 1.59857 1.06685 1.08340 0.71692 0.92248 0.91890 0.92649 0.89498 0.90693 0.94787 0.90639 0.92647 0.74439 0.79735 0.88376 0.92636 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.20 37.15 0.38 -1.94 16 2 C 0.11 1.86 6.08 -4.04 -0.02 1.83 16 3 N -0.55 -11.19 2.49 -175.62 -0.44 -11.62 16 4 C 0.22 5.23 4.75 -5.19 -0.02 5.20 16 5 C -0.53 -13.96 8.36 -34.43 -0.29 -14.24 16 6 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 8 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.51 10.07 7.63 -11.66 -0.09 9.98 16 14 O -0.56 -10.79 16.12 5.48 0.09 -10.71 16 15 C 0.50 9.51 7.73 -11.65 -0.09 9.42 16 16 O -0.41 -9.31 9.51 5.45 0.05 -9.26 16 17 N -0.64 -9.68 5.40 -11.81 -0.06 -9.75 16 18 C 0.34 5.41 8.10 -152.88 -1.24 4.17 16 19 C -0.28 -5.16 9.66 -39.63 -0.38 -5.55 16 20 C 0.28 4.81 7.88 -17.15 -0.14 4.67 16 21 O -0.29 -4.59 10.58 -19.71 -0.21 -4.80 16 22 C 0.03 0.37 10.69 101.05 1.08 1.45 16 23 N -0.34 -5.30 12.08 30.52 0.37 -4.93 16 24 N -0.49 -6.38 7.40 31.21 0.23 -6.15 16 25 H 0.44 3.95 8.96 -182.62 -1.64 2.31 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 30 H 0.07 1.22 7.52 -51.93 -0.39 0.83 16 31 H 0.03 0.84 8.02 -51.93 -0.42 0.42 16 32 H 0.08 1.95 5.37 -51.93 -0.28 1.67 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.42 5.07 8.30 -40.82 -0.34 4.73 16 35 H 0.19 3.94 5.82 -52.49 -0.31 3.63 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -31.87 331.27 -6.04 -37.91 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.87 Total: 5.49 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: -0.91 Total: 16.87 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.84 Total: -56.96 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.07 Total: -24.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.87 -6.04 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599972403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.374 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds