Wall clock time and date at job start Tue Mar 31 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 113.99832 * 2 1 4 4 C 1.53001 * 109.46831 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47044 * 65.00105 * 4 3 2 6 6 C 1.46501 * 120.00006 * 263.26454 * 5 4 3 7 7 C 1.50696 * 109.47428 * 270.00485 * 6 5 4 8 8 H 1.08003 * 120.00099 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00378 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00068 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 119.99575 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47367 * 90.00134 * 11 9 7 13 13 H 1.48504 * 109.47162 * 210.00482 * 11 9 7 14 14 H 1.48504 * 109.47394 * 330.00029 * 11 9 7 15 15 C 1.34776 * 119.99971 * 83.27096 * 5 4 3 16 16 O 1.21620 * 119.99803 * 183.82387 * 15 5 4 17 17 C 1.47283 * 120.00256 * 3.82081 * 15 5 4 18 18 C 1.36570 * 125.80945 * 173.51480 * 17 15 5 19 19 C 1.40056 * 106.92933 * 180.02562 * 18 17 15 20 20 C 1.36564 * 106.92802 * 359.97438 * 19 18 17 21 21 C 1.47287 * 125.81190 * 179.97438 * 20 19 18 22 22 N 1.34777 * 120.00470 * 179.97438 * 21 20 19 23 23 O 1.21613 * 119.99464 * 0.02562 * 21 20 19 24 24 O 1.34552 * 108.38785 * 0.24646 * 20 19 18 25 25 H 1.08998 * 109.46558 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46997 * 300.00192 * 1 2 3 27 27 H 1.09002 * 109.46668 * 59.99942 * 1 2 3 28 28 H 1.09000 * 109.47269 * 59.99924 * 3 2 1 29 29 H 1.08996 * 109.46920 * 299.99665 * 3 2 1 30 30 H 1.08997 * 109.47104 * 304.99434 * 4 3 2 31 31 H 1.09003 * 109.46823 * 185.00368 * 4 3 2 32 32 H 1.08997 * 109.46868 * 30.00360 * 6 5 4 33 33 H 1.08996 * 109.47342 * 150.00027 * 6 5 4 34 34 H 0.97001 * 119.99705 * 179.97438 * 10 9 7 35 35 H 1.08003 * 126.53125 * 359.97438 * 18 17 15 36 36 H 1.08001 * 126.53559 * 180.02562 * 19 18 17 37 37 H 0.96995 * 119.99612 * 0.02562 * 22 21 20 38 38 H 0.96995 * 119.99992 * 179.72220 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2484 -0.8748 -1.2990 7 6 5.6951 -1.1245 -0.9590 8 1 6.3472 -0.2945 -0.7304 9 6 6.1867 -2.4126 -0.9408 10 7 7.4494 -2.6305 -0.6447 11 14 5.0591 -3.8482 -1.3369 12 1 5.0968 -4.1193 -2.7964 13 1 5.5135 -5.0533 -0.5976 14 1 3.6702 -3.5133 -0.9315 15 6 4.1328 1.3167 -2.3579 16 8 4.4314 0.7912 -3.4133 17 6 3.9415 2.7755 -2.2897 18 6 4.1887 3.6618 -3.2988 19 6 3.8736 4.9356 -2.8092 20 6 3.4470 4.7725 -1.5222 21 6 3.0110 5.8486 -0.6159 22 7 2.6107 5.5538 0.6369 23 8 3.0113 7.0030 -0.9983 24 8 3.4984 3.4622 -1.2208 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5686 0.8427 31 1 3.9785 2.1766 0.0903 32 1 3.6120 -1.3889 -0.5788 33 1 4.0404 -1.2505 -2.3007 34 1 7.7950 -3.5367 -0.6315 35 1 4.5577 3.4255 -4.2860 36 1 3.9522 5.8688 -3.3471 37 1 2.6101 4.6330 0.9417 38 1 2.3274 6.2629 1.2350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610959874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:34 Heat of formation + Delta-G solvation = -88.952717 kcal Electronic energy + Delta-G solvation = -24520.340479 eV Core-core repulsion = 20751.612182 eV Total energy + Delta-G solvation = -3768.728297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.90788 -39.55872 -39.05066 -37.72075 -35.31949 -34.17163 -33.12225 -32.64818 -30.48133 -29.87117 -27.82067 -26.19226 -24.78346 -22.93051 -22.72443 -21.60110 -20.74911 -19.62311 -18.39844 -17.37531 -17.13118 -16.97570 -16.66299 -16.34727 -15.77657 -15.37447 -15.01728 -14.84161 -14.63937 -14.15799 -14.00202 -13.51856 -13.41869 -13.22630 -13.05106 -12.55684 -12.19824 -12.12540 -11.78692 -11.63244 -11.06649 -10.92289 -10.81866 -10.48844 -10.19498 -10.17252 -10.13173 -9.77234 -9.60669 -9.49084 -8.83874 -8.59986 -7.90345 -6.10549 -4.10307 0.61578 1.92255 2.31161 2.91189 3.15216 3.30445 3.36410 3.40055 3.45774 3.60077 3.86222 4.39641 4.45905 4.74460 4.80022 5.10183 5.22973 5.23294 5.32452 5.37422 5.39707 5.41936 5.44364 5.62933 5.69082 5.73801 6.10448 6.13879 6.29127 6.49327 6.76013 6.91226 6.96408 7.14611 7.20391 7.57180 7.77380 7.98283 8.38382 8.60258 8.91467 9.48971 11.02472 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.004884 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.189609 B = 5731.390508 C = 6509.493563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.047 3.953 4 C 0.106 3.894 5 N -0.566 5.566 6 C 0.219 3.781 7 C -0.535 4.535 8 H 0.075 0.925 9 C 0.075 3.925 10 N -0.896 5.896 11 Si 0.873 3.127 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.585 3.415 16 O -0.509 6.509 17 C -0.011 4.011 18 C -0.151 4.151 19 C -0.119 4.119 20 C -0.081 4.081 21 C 0.613 3.387 22 N -0.843 5.843 23 O -0.523 6.523 24 O -0.150 6.150 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.168 0.832 36 H 0.165 0.835 37 H 0.408 0.592 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.795 13.176 3.738 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C -0.031 4.031 4 C -0.018 4.018 5 N -0.296 5.296 6 C 0.099 3.901 7 C -0.573 4.573 8 H 0.093 0.907 9 C -0.127 4.127 10 N -0.534 5.534 11 Si 0.700 3.300 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.369 3.631 16 O -0.386 6.386 17 C -0.066 4.066 18 C -0.171 4.171 19 C -0.140 4.140 20 C -0.134 4.134 21 C 0.398 3.602 22 N -0.406 5.406 23 O -0.400 6.400 24 O -0.047 6.047 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.186 0.814 36 H 0.183 0.817 37 H 0.237 0.763 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -13.409 13.077 3.116 18.987 hybrid contribution -0.681 -0.621 0.171 0.937 sum -14.090 12.456 3.286 19.091 Atomic orbital electron populations 1.22714 0.81737 1.02639 0.99404 1.88038 1.19012 1.27301 1.95226 1.23114 0.94831 0.85206 0.99964 1.21801 0.91400 0.99699 0.88855 1.47813 1.62869 1.10838 1.08041 1.19822 0.97392 0.74343 0.98501 1.21318 0.93480 0.94376 1.48113 0.90701 1.24811 0.94953 0.98616 0.94350 1.69893 1.13565 1.21388 1.48580 0.86878 0.81714 0.82246 0.79154 1.19886 1.21069 1.18601 1.16778 0.79265 0.81913 0.85131 1.90858 1.48474 1.70336 1.28980 1.23114 1.03537 0.93896 0.86010 1.21965 1.03304 0.90823 1.01024 1.21938 0.99325 0.99375 0.93325 1.22221 1.11528 0.82567 0.97061 1.16624 0.76471 0.85929 0.81178 1.43688 1.69102 1.13754 1.14087 1.90907 1.54771 1.18690 1.75652 1.84313 1.65828 1.17238 1.37320 0.89755 0.94409 0.94472 0.92670 0.93490 0.88041 0.88779 0.93647 0.94364 0.92500 0.81415 0.81716 0.76320 0.75869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.69 10.36 -35.23 -0.37 -6.06 16 3 C 0.05 0.59 5.69 37.16 0.21 0.81 16 4 C 0.11 1.62 5.37 -4.04 -0.02 1.60 16 5 N -0.57 -11.44 2.42 -176.39 -0.43 -11.87 16 6 C 0.22 5.28 4.23 -5.20 -0.02 5.26 16 7 C -0.53 -15.03 9.94 -34.44 -0.34 -15.37 16 8 H 0.07 2.30 8.06 -52.48 -0.42 1.87 16 9 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 10 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 11 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 15 C 0.58 11.83 7.60 -12.58 -0.10 11.74 16 16 O -0.51 -12.11 16.43 5.26 0.09 -12.03 16 17 C -0.01 -0.18 6.54 -36.51 -0.24 -0.42 16 18 C -0.15 -2.12 10.60 -39.50 -0.42 -2.54 16 19 C -0.12 -1.47 10.60 -39.50 -0.42 -1.89 16 20 C -0.08 -0.99 7.13 -36.51 -0.26 -1.25 16 21 C 0.61 6.83 8.08 -12.58 -0.10 6.73 16 22 N -0.84 -5.87 8.87 30.40 0.27 -5.60 16 23 O -0.52 -7.38 17.70 5.27 0.09 -7.29 16 24 O -0.15 -1.94 5.93 4.34 0.03 -1.92 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.60 7.20 -51.93 -0.37 0.23 16 30 H 0.10 1.61 8.02 -51.93 -0.42 1.19 16 31 H 0.09 1.24 5.42 -51.93 -0.28 0.96 16 32 H 0.05 1.07 6.84 -51.93 -0.36 0.72 16 33 H 0.04 0.98 6.80 -51.93 -0.35 0.63 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.17 2.21 8.06 -52.48 -0.42 1.78 16 36 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.41 2.16 8.59 -40.82 -0.35 1.81 16 38 H 0.41 2.04 8.93 -40.82 -0.36 1.68 16 LS Contribution 332.99 15.07 5.02 5.02 Total: -1.00 -35.54 332.99 -4.51 -40.05 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.62 Total: 1.32 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -0.69 Total: 8.20 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.62 Total: -43.96 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.16 Total: -27.29 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.54 -4.51 -40.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610959874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.902 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds