Wall clock time and date at job start Tue Mar 31 2020 03:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46493 * 109.47194 * 2 1 4 4 C 1.46505 * 119.99951 * 269.99744 * 3 2 1 5 5 C 1.50697 * 109.47024 * 270.00126 * 4 3 2 6 6 H 1.07994 * 120.00296 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99582 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99753 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99869 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47470 * 90.00644 * 9 7 5 11 11 H 1.48508 * 109.47061 * 210.00359 * 9 7 5 12 12 H 1.48499 * 109.47324 * 330.00020 * 9 7 5 13 13 C 1.34780 * 120.00326 * 90.00005 * 3 2 1 14 14 O 1.21584 * 120.00199 * 179.97438 * 13 3 2 15 15 N 1.34780 * 119.99724 * 0.02562 * 13 3 2 16 16 C 1.39536 * 120.00105 * 179.97438 * 15 13 3 17 17 C 1.35730 * 126.10097 * 359.97438 * 16 15 13 18 18 C 1.41050 * 107.78993 * 179.97438 * 17 16 15 19 19 C 1.47600 * 125.96981 * 180.02562 * 18 17 16 20 20 O 1.21491 * 119.99986 * 359.96877 * 19 18 17 21 21 O 1.34738 * 119.99981 * 179.97438 * 19 18 17 22 22 N 1.31916 * 108.06490 * 0.02562 * 18 17 16 23 23 N 1.35967 * 126.09946 * 179.97438 * 16 15 13 24 24 C 1.46502 * 125.95507 * 0.04328 * 23 16 15 25 25 H 1.08999 * 109.47348 * 299.99783 * 1 2 3 26 26 H 1.09000 * 109.47321 * 60.00005 * 1 2 3 27 27 H 1.09005 * 109.47485 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47011 * 239.99549 * 2 1 3 29 29 H 1.09009 * 109.47039 * 120.00083 * 2 1 3 30 30 H 1.08992 * 109.46754 * 30.00274 * 4 3 2 31 31 H 1.09000 * 109.46568 * 149.99809 * 4 3 2 32 32 H 0.97000 * 119.99823 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99871 * 359.97438 * 15 13 3 34 34 H 1.08001 * 126.10380 * 359.97438 * 17 16 15 35 35 H 0.96695 * 116.99717 * 179.97438 * 21 19 18 36 36 H 1.09000 * 109.46883 * 269.97462 * 24 23 16 37 37 H 1.08997 * 109.46897 * 29.97463 * 24 23 16 38 38 H 1.08998 * 109.47107 * 149.98123 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3428 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1841 -3.2569 9 14 3.0131 3.4359 -3.9287 10 1 3.1157 4.8560 -3.5070 11 1 3.4066 3.3135 -5.3554 12 1 1.6135 2.9692 -3.7596 13 6 2.2429 2.0166 1.1672 14 8 2.6487 3.1627 1.1672 15 7 2.0188 1.3810 2.3344 16 6 2.2519 2.0386 3.5429 17 6 2.7023 3.3109 3.6871 18 6 2.7974 3.5803 5.0684 19 6 3.2458 4.8488 5.6753 20 8 3.5752 5.7786 4.9661 21 8 3.2899 4.9756 7.0160 22 7 2.4155 2.5006 5.7230 23 7 2.0683 1.5192 4.7859 24 6 1.5911 0.1683 5.0919 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5817 1.6876 -2.0283 31 1 2.0955 3.1409 -1.1384 32 1 5.7177 2.5746 -4.0828 33 1 1.6954 0.4665 2.3344 34 1 2.9446 3.9947 2.8871 35 1 3.5906 5.8250 7.3669 36 1 0.5038 0.1757 5.1681 37 1 1.8950 -0.5130 4.2972 38 1 2.0193 -0.1627 6.0380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725225260.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:51 Heat of formation + Delta-G solvation = -15.209631 kcal Electronic energy + Delta-G solvation = -23963.969434 eV Core-core repulsion = 20230.731629 eV Total energy + Delta-G solvation = -3733.237806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.62669 -40.01653 -39.48345 -36.10293 -35.81778 -34.85893 -33.31451 -32.64951 -30.53208 -29.42494 -27.63273 -27.45930 -24.29736 -23.30425 -22.99866 -21.00684 -20.73901 -19.15445 -18.63152 -17.79443 -17.13008 -16.89851 -16.18220 -16.07858 -15.65715 -15.41963 -14.85376 -14.55083 -14.08681 -13.90690 -13.58571 -13.51918 -13.40251 -12.99722 -12.68195 -12.62848 -12.40216 -12.07051 -11.62106 -11.57159 -11.14583 -11.11632 -10.95808 -10.85691 -10.75270 -10.55231 -10.20929 -9.62816 -9.46464 -9.17074 -8.61922 -8.23556 -7.79020 -6.11785 -4.11560 1.11459 1.84650 2.11313 2.63767 3.18438 3.20524 3.28118 3.33383 3.36907 3.65719 4.04717 4.21960 4.36825 4.84199 4.89285 4.99628 5.10211 5.18808 5.25998 5.31778 5.46680 5.48500 5.71818 5.86022 5.96572 5.98636 6.21164 6.32343 6.38176 6.64315 6.74363 6.92803 7.11826 7.19310 7.41736 7.55407 7.88822 8.21522 8.41923 8.88038 8.93496 9.47436 11.01497 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.004359 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.651896 B = 6421.248830 C = 7649.999535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.232 3.768 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.707 3.293 14 O -0.547 6.547 15 N -0.666 5.666 16 C 0.336 3.664 17 C -0.223 4.223 18 C 0.052 3.948 19 C 0.571 3.429 20 O -0.491 6.491 21 O -0.504 6.504 22 N -0.236 5.236 23 N -0.379 5.379 24 C 0.097 3.903 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.191 0.809 35 H 0.414 0.586 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 -6.078 16.127 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 N -0.330 5.330 4 C 0.111 3.889 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.702 3.298 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.408 3.592 14 O -0.420 6.420 15 N -0.319 5.319 16 C 0.116 3.884 17 C -0.255 4.255 18 C -0.112 4.112 19 C 0.411 3.589 20 O -0.375 6.375 21 O -0.315 6.315 22 N -0.066 5.066 23 N -0.171 5.171 24 C -0.044 4.044 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.241 0.759 34 H 0.208 0.792 35 H 0.272 0.728 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.791 -5.911 16.609 20.670 hybrid contribution -0.301 0.599 -1.148 1.329 sum -11.091 -5.312 15.462 19.756 Atomic orbital electron populations 1.22278 0.96404 1.01831 1.02637 1.21455 0.93603 0.83813 1.03087 1.47241 1.67142 1.13431 1.05234 1.19675 0.97504 0.93338 0.78362 1.21314 0.95284 1.33302 1.07281 0.90704 1.24836 0.94988 0.95693 0.97321 1.69891 1.15110 1.44778 1.23546 0.86866 0.81317 0.81784 0.79791 1.19738 1.21067 1.19068 1.15603 0.79351 0.84752 0.79470 1.90875 1.50253 1.16294 1.84613 1.42311 1.70195 1.17153 1.02202 1.17623 0.99605 0.91547 0.79605 1.21636 1.12471 0.96204 0.95185 1.20660 1.05029 0.92308 0.93167 1.19292 0.74019 0.85524 0.80021 1.90966 1.44250 1.39431 1.62891 1.84637 1.80402 1.43634 1.22837 1.77810 1.20151 0.96784 1.11852 1.48706 1.53960 1.12619 1.01803 1.21920 1.00571 0.77831 1.04055 0.93075 0.91684 0.91691 0.88819 0.92306 0.94762 0.94145 0.92477 0.75931 0.79180 0.72754 0.90265 0.89700 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.15 0.38 -1.45 16 2 C 0.10 1.40 5.89 -4.05 -0.02 1.38 16 3 N -0.60 -11.28 2.46 -180.81 -0.44 -11.72 16 4 C 0.23 5.34 4.23 -5.19 -0.02 5.32 16 5 C -0.53 -14.78 9.94 -34.44 -0.34 -15.12 16 6 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 9 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 13 C 0.71 13.84 8.24 -86.91 -0.72 13.12 16 14 O -0.55 -13.06 13.03 5.29 0.07 -12.99 16 15 N -0.67 -9.81 5.28 -15.76 -0.08 -9.89 16 16 C 0.34 5.25 7.67 -152.59 -1.17 4.08 16 17 C -0.22 -4.05 9.41 -39.41 -0.37 -4.42 16 18 C 0.05 0.85 7.11 -82.95 -0.59 0.26 16 19 C 0.57 8.58 8.34 34.55 0.29 8.86 16 20 O -0.49 -8.68 17.69 -19.26 -0.34 -9.02 16 21 O -0.50 -5.54 13.43 -40.60 -0.55 -6.09 16 22 N -0.24 -3.52 12.61 33.32 0.42 -3.10 16 23 N -0.38 -4.87 4.04 -67.08 -0.27 -5.14 16 24 C 0.10 0.69 11.28 59.85 0.68 1.36 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 29 H 0.06 0.62 6.36 -51.92 -0.33 0.29 16 30 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 31 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 32 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.40 4.31 5.69 -40.82 -0.23 4.07 16 34 H 0.19 4.04 5.80 -52.49 -0.30 3.73 16 35 H 0.41 2.29 9.11 45.56 0.42 2.71 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.42 7.50 -51.93 -0.39 0.03 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 332.14 15.07 5.01 5.01 Total: -1.00 -37.42 332.14 -5.76 -43.19 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.69 Total: 4.39 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: -1.99 Total: 15.41 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.40 Total: -56.25 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.82 Total: -28.10 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -37.42 -5.76 -43.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725225260.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.977 kcal (2) G-P(sol) polarization free energy of solvation -37.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds