Wall clock time and date at job start Tue Mar 31 2020 03:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47216 * 2 1 4 4 C 1.50703 * 109.46761 * 119.99512 * 2 1 3 5 5 H 1.08007 * 119.99877 * 120.00265 * 4 2 1 6 6 C 1.37872 * 120.00602 * 300.00184 * 4 2 1 7 7 N 1.31517 * 119.99729 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00327 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47121 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47162 * 299.99667 * 8 6 4 11 11 H 1.48498 * 109.47306 * 59.99848 * 8 6 4 12 12 N 1.46496 * 109.47119 * 239.99557 * 2 1 3 13 13 C 1.46496 * 120.00323 * 300.00067 * 12 2 1 14 14 C 1.34776 * 119.99928 * 120.00067 * 12 2 1 15 15 O 1.21576 * 119.99739 * 0.02562 * 14 12 2 16 16 N 1.34770 * 120.00225 * 179.97438 * 14 12 2 17 17 C 1.38459 * 120.00286 * 173.83039 * 16 14 12 18 18 C 1.39249 * 126.43540 * 150.25248 * 17 16 14 19 19 C 1.46717 * 126.51559 * 359.96827 * 18 17 16 20 20 O 1.21597 * 120.00420 * 359.97438 * 19 18 17 21 21 O 1.34834 * 119.99925 * 179.97438 * 19 18 17 22 22 C 1.41489 * 106.96744 * 179.97438 * 18 17 16 23 23 N 1.30297 * 108.16733 * 0.02562 * 22 18 17 24 24 N 1.34763 * 126.43261 * 329.94313 * 17 16 14 25 25 C 1.46503 * 125.73939 * 0.03819 * 24 17 16 26 26 H 1.08999 * 109.47383 * 300.00131 * 1 2 3 27 27 H 1.08992 * 109.47153 * 60.00415 * 1 2 3 28 28 H 1.09000 * 109.46826 * 180.02562 * 1 2 3 29 29 H 0.97002 * 119.99942 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47202 * 89.99926 * 13 12 2 31 31 H 1.08997 * 109.47351 * 210.00164 * 13 12 2 32 32 H 1.09005 * 109.46875 * 330.00217 * 13 12 2 33 33 H 0.97002 * 120.00219 * 353.82861 * 16 14 12 34 34 H 0.96700 * 117.00228 * 179.97438 * 21 19 18 35 35 H 1.07996 * 125.91682 * 179.97438 * 22 18 17 36 36 H 1.09000 * 109.47330 * 92.72089 * 25 24 17 37 37 H 1.09005 * 109.46428 * 212.71297 * 25 24 17 38 38 H 1.08993 * 109.46899 * 332.71088 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1194 4.0081 9 1 1.8268 -0.4198 5.2205 10 1 1.8279 -2.5197 4.0084 11 1 3.8074 -1.1189 4.0079 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0873 1.1281 -1.8907 16 7 3.2429 -0.6712 -3.1834 17 6 3.9305 0.0329 -4.1573 18 6 4.9164 -0.4712 -5.0016 19 6 5.4235 -1.8477 -5.0273 20 8 4.9758 -2.6752 -4.2569 21 8 6.3860 -2.1953 -5.9052 22 6 5.3363 0.5963 -5.8298 23 7 4.6528 1.6566 -5.5035 24 7 3.7671 1.3335 -4.4701 25 6 2.8235 2.2550 -3.8322 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7086 1.1614 3.4844 30 1 0.7377 -2.1445 -1.9992 31 1 2.4629 -2.5820 -1.9862 32 1 1.5295 -2.5969 -0.4706 33 1 3.0850 -1.6220 -3.2929 34 1 6.6885 -3.1135 -5.8844 35 1 6.0928 0.5420 -6.5986 36 1 3.3208 2.7753 -3.0136 37 1 2.4737 2.9819 -4.5654 38 1 1.9741 1.6936 -3.4434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725231689.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:49 Heat of formation + Delta-G solvation = -40.541583 kcal Electronic energy + Delta-G solvation = -24629.843510 eV Core-core repulsion = 20895.507229 eV Total energy + Delta-G solvation = -3734.336282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.99881 -41.18756 -40.51732 -37.58217 -36.95873 -36.19139 -34.82782 -34.15038 -31.62281 -30.31648 -28.27771 -27.81238 -27.30324 -24.87362 -23.97818 -22.48451 -21.52798 -20.66226 -19.30222 -19.12804 -18.74477 -18.33427 -17.62745 -17.36964 -16.87483 -16.57615 -16.20718 -15.90331 -15.59614 -15.04559 -14.86572 -14.51374 -14.33030 -14.20260 -13.71425 -13.56163 -13.45267 -13.15503 -12.92246 -12.77180 -12.63099 -12.47646 -12.42811 -12.21948 -12.13786 -11.96544 -11.47224 -11.21981 -11.15851 -10.52908 -10.28255 -9.67683 -9.34253 -8.16563 -6.32009 0.15721 0.93592 1.05041 1.41642 1.43104 1.48550 1.54036 1.89115 2.19775 2.34486 2.40063 2.82040 3.12533 3.51038 3.80800 4.05852 4.22551 4.33341 4.41721 4.54705 4.60000 4.73664 4.76242 4.82738 4.90248 4.93440 5.02729 5.28389 5.42033 5.45435 5.59992 5.69344 5.70869 5.85677 6.04615 6.13713 6.45698 6.72288 6.80826 7.14593 7.23437 7.41231 8.87374 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.004379 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.654737 B = 6391.894885 C = 7079.586368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.279 3.721 3 H 0.021 0.979 4 C -0.543 4.543 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.283 1.283 10 H -0.264 1.264 11 H -0.281 1.281 12 N -0.598 5.598 13 C 0.075 3.925 14 C 0.686 3.314 15 O -0.605 6.605 16 N -0.646 5.646 17 C 0.406 3.594 18 C -0.337 4.337 19 C 0.574 3.426 20 O -0.565 6.565 21 O -0.498 6.498 22 C 0.134 3.866 23 N -0.311 5.311 24 N -0.361 5.361 25 C 0.126 3.874 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.046 0.954 29 H 0.265 0.735 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.435 0.565 34 H 0.433 0.567 35 H 0.240 0.760 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.946 -5.815 -17.018 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.178 3.822 3 H 0.039 0.961 4 C -0.581 4.581 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.786 3.214 9 H -0.208 1.208 10 H -0.188 1.188 11 H -0.207 1.207 12 N -0.331 5.331 13 C -0.068 4.068 14 C 0.388 3.612 15 O -0.484 6.484 16 N -0.302 5.302 17 C 0.174 3.826 18 C -0.353 4.353 19 C 0.421 3.579 20 O -0.459 6.459 21 O -0.311 6.311 22 C -0.055 4.055 23 N -0.131 5.131 24 N -0.143 5.143 25 C -0.014 4.014 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.279 0.721 34 H 0.295 0.705 35 H 0.256 0.744 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.395 -3.386 -16.612 17.514 hybrid contribution 0.365 -2.052 1.462 2.546 sum 4.760 -5.438 -15.150 16.786 Atomic orbital electron populations 1.21890 0.96587 1.00301 1.00311 1.18583 0.91664 0.92209 0.79779 0.96069 1.21531 1.32142 1.13271 0.91190 0.92369 1.25614 0.94995 0.95590 1.01668 1.69984 1.36966 1.23591 1.24566 0.85579 0.78252 0.79088 0.78503 1.20815 1.18826 1.20673 1.47549 1.49767 1.13305 1.22511 1.21876 1.00852 0.80566 1.03460 1.16163 0.79919 0.84741 0.80405 1.90959 1.63741 1.16421 1.77310 1.42197 1.56983 1.13631 1.17409 1.18062 0.90796 0.85132 0.88640 1.18680 1.09110 0.95531 1.11989 1.19202 0.76056 0.86194 0.76399 1.90855 1.60136 1.52919 1.42001 1.84483 1.51755 1.38824 1.56028 1.24562 0.96914 0.86670 0.97305 1.77199 1.07428 1.24013 1.04435 1.48696 1.31431 1.06772 1.27444 1.22090 0.90086 0.92329 0.96849 0.91066 0.95621 0.93526 0.92540 0.90758 0.90789 0.90007 0.72091 0.70532 0.74371 0.90501 0.88121 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.97 71.98 0.65 -5.33 16 2 C 0.28 13.75 2.64 44.25 0.12 13.87 16 3 H 0.02 1.24 6.90 -2.39 -0.02 1.22 16 4 C -0.54 -28.57 7.99 25.60 0.20 -28.37 16 5 H 0.06 3.02 7.33 -2.91 -0.02 3.00 16 6 C 0.02 1.15 5.30 84.65 0.45 1.60 16 7 N -0.91 -50.68 11.32 21.45 0.24 -50.43 16 8 Si 0.96 42.30 29.54 68.60 2.03 44.32 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 N -0.60 -24.34 2.75 -844.87 -2.33 -26.66 16 13 C 0.07 2.33 9.25 127.77 1.18 3.51 16 14 C 0.69 27.66 7.20 179.06 1.29 28.95 16 15 O -0.60 -27.78 10.76 -3.95 -0.04 -27.83 16 16 N -0.65 -21.45 4.99 -321.11 -1.60 -23.05 16 17 C 0.41 13.04 7.31 132.56 0.97 14.01 16 18 C -0.34 -9.08 6.15 -20.02 -0.12 -9.21 16 19 C 0.57 13.92 8.31 70.04 0.58 14.50 16 20 O -0.57 -16.59 16.27 19.52 0.32 -16.27 16 21 O -0.50 -7.55 13.28 -57.46 -0.76 -8.31 16 22 C 0.13 3.04 11.86 85.72 1.02 4.05 16 23 N -0.31 -8.80 12.47 -56.22 -0.70 -9.50 16 24 N -0.36 -11.54 3.94 -365.03 -1.44 -12.98 16 25 C 0.13 3.94 9.22 127.77 1.18 5.12 16 26 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 27 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.92 7.67 -2.39 -0.02 1.90 16 29 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.98 6.28 -2.39 -0.01 1.96 16 32 H 0.08 2.71 7.02 -2.38 -0.02 2.70 16 33 H 0.43 12.84 5.24 -92.71 -0.49 12.35 16 34 H 0.43 2.59 9.11 -74.06 -0.67 1.91 16 35 H 0.24 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.08 2.75 6.88 -2.39 -0.02 2.73 16 37 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 38 H 0.07 2.51 6.13 -2.39 -0.01 2.49 16 Total: -1.00 -69.21 320.24 3.20 -66.01 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.03 Total: 21.99 kcal Atomic # 6 Polarization: 35.20 SS G_CDS: 7.51 Total: 42.71 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -5.82 Total: -122.63 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.49 Total: -52.41 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -69.21 3.20 -66.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725231689.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.472 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds