Wall clock time and date at job start Tue Mar 31 2020 04:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47009 * 270.02121 * 7 6 5 9 9 C 1.46901 * 110.99847 * 66.04936 * 8 7 6 10 10 C 1.46905 * 111.00046 * 189.99871 * 8 7 6 11 11 C 1.50694 * 109.46820 * 170.00200 * 10 8 7 12 12 O 1.21293 * 120.00635 * 0.02562 * 11 10 8 13 13 N 1.34779 * 119.99657 * 180.02562 * 11 10 8 14 14 C 1.37101 * 120.00295 * 179.97438 * 13 11 10 15 15 H 1.08012 * 119.99552 * 0.02562 * 14 13 11 16 16 C 1.38946 * 120.00411 * 179.97438 * 14 13 11 17 17 N 1.31414 * 120.00030 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47325 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46901 * 120.00165 * 18 16 14 21 21 H 1.48499 * 109.46798 * 239.99752 * 18 16 14 22 22 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 23 23 C 1.38326 * 120.03416 * 359.95854 * 22 6 5 24 24 F 1.35098 * 120.05006 * 179.97438 * 23 22 6 25 25 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 26 26 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 28 28 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 29 29 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 30 30 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 31 31 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 32 32 H 1.08997 * 109.47601 * 59.99828 * 9 8 7 33 33 H 1.09000 * 109.47165 * 180.02562 * 9 8 7 34 34 H 1.09007 * 109.46972 * 299.99676 * 9 8 7 35 35 H 1.08996 * 109.47112 * 290.00353 * 10 8 7 36 36 H 1.08998 * 109.46889 * 50.00512 * 10 8 7 37 37 H 0.96999 * 119.99700 * 359.97438 * 13 11 10 38 38 H 0.96996 * 120.00325 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.98065 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 7 4.2075 5.4513 -1.4038 9 6 2.9320 5.7046 -2.0872 10 6 5.0762 6.6349 -1.4550 11 6 5.4805 6.8998 -2.8823 12 8 5.0838 6.1743 -3.7698 13 7 6.2831 7.9428 -3.1729 14 6 6.6515 8.1836 -4.4713 15 1 6.2982 7.5375 -5.2615 16 6 7.4785 9.2592 -4.7709 17 7 7.9080 10.0455 -3.8095 18 14 7.9798 9.5876 -6.5402 19 1 7.3679 8.5649 -7.4260 20 1 7.5117 10.9376 -6.9448 21 1 9.4587 9.5211 -6.6560 22 6 4.0580 2.5196 -0.0058 23 6 3.4334 1.2855 -0.0001 24 9 4.1713 0.1538 0.0047 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 0.2138 2.3201 -0.0063 29 1 1.3344 4.5114 -0.0166 30 1 3.3564 5.7503 0.4934 31 1 4.9431 4.9440 0.4974 32 1 2.3872 6.4884 -1.5611 33 1 3.1255 6.0212 -3.1121 34 1 2.3368 4.7914 -2.0957 35 1 4.5377 7.4980 -1.0638 36 1 5.9667 6.4583 -0.8519 37 1 6.6001 8.5232 -2.4632 38 1 8.4856 10.7962 -4.0186 39 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731210647.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:35 Heat of formation + Delta-G solvation = -80.543544 kcal Electronic energy + Delta-G solvation = -23114.882175 eV Core-core repulsion = 19358.891316 eV Total energy + Delta-G solvation = -3755.990858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.80580 -40.27055 -38.79710 -37.89699 -35.92739 -33.84096 -31.29692 -31.11040 -30.84465 -28.18755 -27.61994 -26.46577 -24.64699 -22.91365 -22.56986 -20.95512 -19.15632 -18.47851 -17.83974 -17.07081 -16.94356 -16.34004 -15.98031 -15.31693 -15.14834 -15.02205 -14.95226 -14.61270 -14.39144 -14.05250 -13.80143 -13.60804 -13.24708 -12.93278 -12.45816 -12.35127 -12.11643 -11.73799 -11.65565 -11.51026 -11.38751 -11.21790 -11.18448 -11.06845 -10.92004 -10.33268 -10.21485 -9.47674 -9.04344 -8.45757 -8.30876 -7.96122 -7.82346 -6.40797 -3.81391 1.01094 1.07475 2.90658 3.17081 3.27603 3.33353 3.36452 3.91901 4.07881 4.12569 4.32731 4.48645 4.59859 4.77427 4.83102 4.96725 5.05076 5.11393 5.14928 5.25818 5.33300 5.37862 5.53218 5.72154 5.72485 5.75073 5.91356 5.95371 5.97176 6.03064 6.29077 6.39468 6.48331 6.56584 7.06436 7.26286 7.36422 7.56575 8.07942 8.63200 9.19630 9.55833 10.07843 10.77096 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.031710 B = 0.002673 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.789832 B =10472.672471 C =10561.967672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.090 3.910 4 C -0.183 4.183 5 C -0.082 4.082 6 C -0.076 4.076 7 C 0.093 3.907 8 N -0.514 5.514 9 C 0.019 3.981 10 C 0.045 3.955 11 C 0.444 3.556 12 O -0.576 6.576 13 N -0.565 5.565 14 C -0.297 4.297 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.903 5.903 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.092 4.092 23 C 0.068 3.932 24 F -0.134 7.134 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.014 0.986 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.524 -12.359 12.516 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.044 3.956 4 C -0.202 4.202 5 C -0.100 4.100 6 C -0.077 4.077 7 C -0.034 4.034 8 N -0.237 5.237 9 C -0.128 4.128 10 C -0.086 4.086 11 C 0.230 3.770 12 O -0.460 6.460 13 N -0.202 5.202 14 C -0.426 4.426 15 H 0.121 0.879 16 C -0.180 4.180 17 N -0.544 5.544 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.111 4.111 23 C 0.048 3.952 24 F -0.113 7.113 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.032 0.968 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.316 -13.291 11.643 22.125 hybrid contribution -0.033 1.207 0.013 1.208 sum -13.349 -12.084 11.656 21.449 Atomic orbital electron populations 1.23092 0.78100 1.04114 1.01482 1.86123 1.21589 1.25984 1.88888 1.18986 0.90818 0.85524 1.00310 1.21056 1.00085 0.91404 1.07625 1.20933 0.94023 0.97217 0.97873 1.19510 0.92982 0.94740 1.00455 1.21059 0.99908 0.91932 0.90539 1.61591 1.15286 1.34102 1.12769 1.22607 0.89345 0.99299 1.01572 1.21883 0.97535 0.91514 0.97651 1.19724 0.84074 0.83685 0.89533 1.90494 1.58181 1.49081 1.48252 1.41876 1.43266 1.25545 1.09536 1.19745 1.26863 1.11270 0.84762 0.87878 1.25255 0.97048 0.95995 0.99712 1.69618 1.35118 1.17356 1.32318 0.85809 0.78245 0.78263 0.82092 1.19221 1.20806 1.20756 1.20917 1.01326 0.89424 0.99433 1.16951 0.85866 0.83020 1.09362 1.91492 1.76441 1.49014 1.94333 0.92406 0.88092 0.92535 0.84640 0.85220 0.93824 0.89684 0.96778 0.88575 0.91956 0.93358 0.89273 0.77506 0.91957 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.60 10.36 -19.58 -0.20 -3.80 16 3 C 0.09 1.09 6.69 -39.17 -0.26 0.83 16 4 C -0.18 -1.84 9.04 -39.45 -0.36 -2.20 16 5 C -0.08 -0.86 7.95 -39.60 -0.31 -1.18 16 6 C -0.08 -0.92 4.88 -104.61 -0.51 -1.43 16 7 C 0.09 1.15 5.12 -4.98 -0.03 1.12 16 8 N -0.51 -8.39 4.49 -245.83 -1.10 -9.50 16 9 C 0.02 0.31 8.77 60.07 0.53 0.84 16 10 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 11 C 0.44 10.39 7.47 -10.99 -0.08 10.31 16 12 O -0.58 -15.47 13.91 5.55 0.08 -15.40 16 13 N -0.57 -14.22 5.29 -10.96 -0.06 -14.28 16 14 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 15 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 16 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 17 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 18 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C -0.09 -1.16 9.67 -39.54 -0.38 -1.54 16 23 C 0.07 0.91 7.31 -39.30 -0.29 0.62 16 24 F -0.13 -1.95 17.11 2.25 0.04 -1.91 16 25 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 28 H 0.14 0.99 6.30 -52.48 -0.33 0.65 16 29 H 0.13 1.14 8.03 -52.49 -0.42 0.72 16 30 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 31 H 0.08 0.94 7.87 -51.93 -0.41 0.54 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 1.90 5.82 -51.93 -0.30 1.60 16 34 H 0.06 0.91 6.16 -51.93 -0.32 0.59 16 35 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 37 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 333.77 15.07 5.03 5.03 Total: -1.00 -32.53 333.77 -6.42 -38.95 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -4.93 Total: 7.26 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.97 Total: 1.39 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.44 Total: -47.56 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.13 Total: -19.20 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.53 -6.42 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731210647.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.594 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds