Wall clock time and date at job start Tue Mar 31 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31377 * 1 3 3 Si 1.86808 * 119.99690 * 2 1 4 4 H 1.48499 * 109.46868 * 275.45300 * 3 2 1 5 5 H 1.48503 * 109.47166 * 35.44866 * 3 2 1 6 6 H 1.48494 * 109.47379 * 155.45483 * 3 2 1 7 7 C 1.38894 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00044 * 337.10487 * 7 2 1 9 9 N 1.37513 * 119.99909 * 157.10477 * 7 2 1 10 10 C 1.33864 * 124.19660 * 140.94478 * 9 7 2 11 11 O 1.21519 * 123.78714 * 359.90950 * 10 9 7 12 12 N 1.34672 * 112.42190 * 179.97438 * 10 9 7 13 13 C 1.46848 * 106.42407 * 0.04526 * 12 10 9 14 14 C 1.52482 * 110.48856 * 118.48863 * 13 12 10 15 15 C 1.53099 * 109.51278 * 63.83711 * 14 13 12 16 16 C 1.52969 * 109.40304 * 59.02139 * 15 14 13 17 17 C 1.52964 * 109.89633 * 299.94805 * 16 15 14 18 18 C 1.52475 * 110.51815 * 241.38991 * 13 12 10 19 19 O 1.43314 * 109.62156 * 60.51888 * 16 15 14 20 20 C 1.44203 * 107.27029 * 119.00263 * 19 16 15 21 21 C 1.54917 * 103.07897 * 338.55849 * 20 19 16 22 22 O 1.43705 * 109.40515 * 179.80547 * 16 15 14 23 23 C 1.34916 * 124.19252 * 320.91564 * 9 7 2 24 24 O 1.21231 * 127.25967 * 0.04344 * 23 9 7 25 25 H 0.97001 * 120.00676 * 359.97438 * 1 2 3 26 26 H 0.96998 * 126.79075 * 180.02562 * 12 10 9 27 27 H 1.08997 * 109.46163 * 303.82483 * 14 13 12 28 28 H 1.09004 * 109.45480 * 183.84768 * 14 13 12 29 29 H 1.08996 * 109.48677 * 299.03815 * 15 14 13 30 30 H 1.08998 * 109.48173 * 178.99758 * 15 14 13 31 31 H 1.08992 * 109.47917 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47650 * 299.99881 * 17 16 15 33 33 H 1.08995 * 109.45635 * 56.14562 * 18 13 12 34 34 H 1.09001 * 109.45854 * 176.09543 * 18 13 12 35 35 H 1.09001 * 110.69807 * 96.95657 * 20 19 16 36 36 H 1.09005 * 110.69429 * 220.16034 * 20 19 16 37 37 H 1.09007 * 110.97566 * 277.41535 * 21 20 19 38 38 H 1.08999 * 111.00755 * 153.65213 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6179 0.0000 4 1 2.3799 2.1130 -1.3937 5 1 1.5074 2.6168 0.8120 6 1 3.5981 1.4099 0.5816 7 6 2.0083 -1.2028 -0.0005 8 1 1.5322 -2.1014 0.3629 9 7 3.3022 -1.2494 -0.4639 10 6 4.2746 -1.9824 0.0922 11 8 4.1154 -2.6856 1.0704 12 7 5.4493 -1.8519 -0.5533 13 6 5.2119 -0.9201 -1.6632 14 6 6.0798 0.3243 -1.5104 15 6 7.5568 -0.0678 -1.6037 16 6 7.8209 -0.7359 -2.9542 17 6 6.9564 -1.9903 -3.0923 18 6 5.4781 -1.6028 -3.0003 19 8 7.5134 0.1801 -4.0126 20 6 8.7289 0.3973 -4.7574 21 6 9.8345 -0.0007 -3.7479 22 8 9.2082 -1.0999 -3.0436 23 6 3.7489 -0.5624 -1.5357 24 8 3.1116 0.1852 -2.2460 25 1 -0.4851 0.8400 0.0004 26 1 6.2867 -2.2870 -0.3292 27 1 5.8868 0.7849 -0.5415 28 1 5.8413 1.0329 -2.3035 29 1 7.7998 -0.7633 -0.8003 30 1 8.1762 0.8243 -1.5122 31 1 7.1495 -2.4603 -4.0565 32 1 7.1995 -2.6891 -2.2919 33 1 4.8624 -2.4986 -3.0796 34 1 5.2307 -0.9193 -3.8126 35 1 8.7614 -0.2451 -5.6374 36 1 8.8251 1.4455 -5.0407 37 1 10.0570 0.8220 -3.0684 38 1 10.7353 -0.3313 -4.2651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770465054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:58 Heat of formation + Delta-G solvation = -145.343596 kcal Electronic energy + Delta-G solvation = -25889.241307 eV Core-core repulsion = 22118.067718 eV Total energy + Delta-G solvation = -3771.173589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.66673 -41.64944 -39.48302 -38.43773 -36.65288 -35.95437 -35.10858 -33.70080 -32.22589 -31.00502 -29.06381 -27.66875 -24.90114 -24.44904 -23.84360 -23.01021 -22.15795 -20.81115 -19.75022 -18.45507 -18.13531 -17.95697 -17.67056 -17.17291 -16.72460 -16.62963 -16.36355 -15.98838 -15.47765 -15.23284 -15.03733 -14.87564 -14.70711 -14.48998 -14.14309 -14.04415 -13.73427 -13.39444 -13.30404 -13.09645 -12.78706 -12.55670 -12.37156 -12.26054 -12.18616 -11.85873 -11.65761 -11.32385 -11.04933 -10.75640 -10.67970 -10.51753 -10.26447 -8.71682 -6.55750 0.65939 1.16686 1.23052 1.31320 1.68045 2.06431 2.20855 2.31994 2.49199 2.86138 2.91978 3.15414 3.42434 3.44034 3.74756 3.79447 3.92566 4.11165 4.17571 4.26102 4.30225 4.31196 4.49818 4.58765 4.64501 4.73392 4.83030 4.86117 4.95928 4.97866 5.03359 5.14318 5.17569 5.21988 5.64360 5.91960 6.17222 6.21557 6.38108 6.81984 6.89785 7.51661 8.40151 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.025664 B = 0.005687 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.739615 B = 4922.547144 C = 5403.909280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.053 3.947 3 Si 0.927 3.073 4 H -0.248 1.248 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.369 4.369 8 H 0.076 0.924 9 N -0.441 5.441 10 C 0.679 3.321 11 O -0.589 6.589 12 N -0.701 5.701 13 C 0.135 3.865 14 C -0.106 4.106 15 C -0.125 4.125 16 C 0.259 3.741 17 C -0.110 4.110 18 C -0.097 4.097 19 O -0.390 6.390 20 C 0.011 3.989 21 C 0.012 3.988 22 O -0.381 6.381 23 C 0.473 3.527 24 O -0.503 6.503 25 H 0.287 0.713 26 H 0.446 0.554 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.956 2.672 -10.541 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.155 4.155 3 Si 0.751 3.249 4 H -0.173 1.173 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.094 0.906 9 N -0.175 5.175 10 C 0.381 3.619 11 O -0.468 6.468 12 N -0.368 5.368 13 C 0.044 3.956 14 C -0.145 4.145 15 C -0.163 4.163 16 C 0.182 3.818 17 C -0.148 4.148 18 C -0.136 4.136 19 O -0.311 6.311 20 C -0.064 4.064 21 C -0.064 4.064 22 O -0.302 6.302 23 C 0.264 3.736 24 O -0.379 6.379 25 H 0.097 0.903 26 H 0.293 0.707 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.103 0.897 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 23.123 2.680 -10.321 25.464 hybrid contribution -0.196 0.431 0.463 0.662 sum 22.927 3.111 -9.858 25.149 Atomic orbital electron populations 1.69765 1.07618 1.29992 1.43932 1.25798 0.95797 1.01604 0.92331 0.86047 0.79493 0.79782 0.79581 1.17256 1.19681 1.18951 1.18668 0.85332 0.97289 1.48209 0.90575 1.42294 1.10000 1.40242 1.24945 1.16505 0.81768 0.81349 0.82252 1.90821 1.83618 1.44388 1.27941 1.45339 1.10715 1.49608 1.31115 1.21052 0.91411 0.92638 0.90468 1.21570 0.94792 0.94578 1.03543 1.22073 0.94391 1.02873 0.96943 1.23246 0.81853 0.88663 0.88071 1.21749 0.91603 0.96221 1.05182 1.21492 0.97849 1.01208 0.93047 1.88951 1.33439 1.64889 1.43867 1.24456 0.82248 1.04207 0.95520 1.24633 0.97948 0.89995 0.93828 1.89240 1.19399 1.43147 1.78436 1.21385 0.90713 0.81673 0.79874 1.90631 1.65096 1.35778 1.46370 0.90281 0.70673 0.91516 0.89057 0.88774 0.88771 0.88639 0.88835 0.90495 0.89050 0.89826 0.86564 0.89658 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.77 13.95 21.65 0.30 -53.47 16 2 C 0.05 3.16 5.12 84.92 0.44 3.60 16 3 Si 0.93 46.77 25.04 68.60 1.72 48.49 16 4 H -0.25 -12.55 6.30 99.48 0.63 -11.92 16 5 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.37 -22.52 9.83 83.96 0.83 -21.70 16 8 H 0.08 5.09 8.06 -2.91 -0.02 5.07 16 9 N -0.44 -23.00 2.31 -598.71 -1.38 -24.38 16 10 C 0.68 31.62 8.58 179.37 1.54 33.16 16 11 O -0.59 -31.30 17.63 -3.78 -0.07 -31.37 16 12 N -0.70 -23.03 5.22 -442.71 -2.31 -25.35 16 13 C 0.14 4.46 0.84 2.59 0.00 4.46 16 14 C -0.11 -2.97 4.83 30.46 0.15 -2.82 16 15 C -0.12 -2.49 5.17 30.62 0.16 -2.33 16 16 C 0.26 5.02 1.02 30.57 0.03 5.05 16 17 C -0.11 -2.19 5.22 30.61 0.16 -2.03 16 18 C -0.10 -2.62 4.83 30.45 0.15 -2.48 16 19 O -0.39 -7.95 9.61 -126.22 -1.21 -9.16 16 20 C 0.01 0.14 8.07 72.64 0.59 0.73 16 21 C 0.01 0.12 7.91 72.64 0.57 0.70 16 22 O -0.38 -6.59 10.98 -126.22 -1.39 -7.98 16 23 C 0.47 21.89 5.19 87.78 0.46 22.34 16 24 O -0.50 -25.79 13.92 -2.88 -0.04 -25.83 16 25 H 0.29 16.08 8.31 -92.71 -0.77 15.31 16 26 H 0.45 11.02 7.71 -92.71 -0.72 10.31 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.09 2.65 7.73 -2.38 -0.02 2.63 16 29 H 0.09 1.68 7.33 -2.39 -0.02 1.66 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.66 7.34 -2.39 -0.02 1.64 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.58 7.74 -2.39 -0.02 2.56 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -77.74 305.15 0.98 -76.75 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.30 Total: 13.62 kcal Atomic # 6 Polarization: 33.61 SS G_CDS: 5.06 Total: 38.67 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -3.39 Total: -103.20 kcal Atomic # 8 Polarization: -71.63 SS G_CDS: -2.71 Total: -74.34 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.72 Total: 48.49 kcal Total: -77.74 0.98 -76.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770465054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.590 kcal (2) G-P(sol) polarization free energy of solvation -77.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds