Wall clock time and date at job start Tue Mar 31 2020 03:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86793 * 120.00062 * 2 1 4 4 H 1.48500 * 109.47422 * 240.00179 * 3 2 1 5 5 H 1.48501 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47105 * 120.00187 * 3 2 1 7 7 C 1.38652 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99911 * 179.97438 * 7 2 1 9 9 O 1.34838 * 120.00273 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00118 * 185.40755 * 9 7 2 11 11 C 1.38955 * 120.03401 * 185.93076 * 10 9 7 12 12 C 1.38115 * 120.07249 * 179.97438 * 11 10 9 13 13 C 1.38209 * 120.13669 * 359.71870 * 12 11 10 14 14 C 1.38920 * 120.06474 * 0.55742 * 13 12 11 15 15 N 1.39939 * 120.03150 * 179.72105 * 14 13 12 16 16 C 1.34778 * 120.00359 * 326.16772 * 15 14 13 17 17 O 1.21589 * 119.99699 * 354.74447 * 16 15 14 18 18 N 1.34777 * 120.00260 * 175.01338 * 16 15 14 19 19 C 1.46493 * 120.00164 * 179.72560 * 18 16 15 20 20 C 1.52996 * 109.47362 * 180.02562 * 19 18 16 21 21 H 1.09006 * 109.47203 * 305.00011 * 20 19 18 22 22 O 1.42894 * 109.47622 * 64.99729 * 20 19 18 23 23 C 1.53002 * 109.47539 * 185.00526 * 20 19 18 24 24 O 1.42900 * 109.47488 * 174.99898 * 23 20 19 25 25 C 1.38739 * 120.03488 * 5.90517 * 10 9 7 26 26 H 0.96996 * 120.00127 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.96081 * 359.95096 * 11 10 9 28 28 H 1.07996 * 119.93507 * 179.97438 * 12 11 10 29 29 H 1.07995 * 119.96509 * 180.27756 * 13 12 11 30 30 H 0.97002 * 120.00065 * 146.17359 * 15 14 13 31 31 H 0.97000 * 119.99881 * 359.73559 * 18 16 15 32 32 H 1.08998 * 109.47420 * 300.00745 * 19 18 16 33 33 H 1.09003 * 109.47154 * 60.00582 * 19 18 16 34 34 H 0.96703 * 113.99534 * 59.99819 * 22 20 19 35 35 H 1.09008 * 109.46721 * 294.99878 * 23 20 19 36 36 H 1.09000 * 109.47189 * 54.98788 * 23 20 19 37 37 H 0.96700 * 113.99824 * 180.02562 * 24 23 20 38 38 H 1.07996 * 120.06747 * 0.04261 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0693 -3.5043 0.1129 11 6 1.4544 -4.7449 -0.0037 12 6 2.2012 -5.9011 0.1111 13 6 3.5629 -5.8281 0.3363 14 6 4.1826 -4.5909 0.4596 15 7 5.5603 -4.5178 0.6934 16 6 6.1679 -5.4603 1.4411 17 8 5.5065 -6.3196 1.9912 18 7 7.5081 -5.4472 1.5835 19 6 8.1679 -6.4681 2.4011 20 6 9.6786 -6.2265 2.3974 21 1 10.0389 -6.1936 1.3691 22 8 9.9639 -4.9836 3.0420 23 6 10.3786 -7.3621 3.1467 24 8 11.7946 -7.1991 3.0439 25 6 3.4350 -3.4277 0.3448 26 1 -0.4850 0.8400 0.0004 27 1 0.3912 -4.8052 -0.1839 28 1 1.7210 -6.8641 0.0205 29 1 4.1449 -6.7338 0.4212 30 1 6.0781 -3.7888 0.3175 31 1 8.0357 -4.7616 1.1447 32 1 7.7938 -6.4126 3.4234 33 1 7.9565 -7.4553 1.9900 34 1 9.6704 -4.9414 3.9625 35 1 10.0856 -7.3396 4.1964 36 1 10.0902 -8.3180 2.7095 37 1 12.3034 -7.8855 3.4966 38 1 3.9151 -2.4646 0.4361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774035881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:39 Heat of formation + Delta-G solvation = -123.713165 kcal Electronic energy + Delta-G solvation = -22875.744073 eV Core-core repulsion = 19105.508450 eV Total energy + Delta-G solvation = -3770.235623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.43635 -39.01285 -38.46524 -36.66180 -36.24962 -34.42196 -34.19245 -32.22079 -30.76945 -29.23640 -28.41643 -25.84795 -25.22778 -22.44805 -22.03131 -21.77506 -20.38779 -18.68306 -18.08224 -17.81407 -17.39209 -17.00699 -16.71106 -15.71354 -15.44270 -15.04969 -14.85502 -14.45961 -14.37787 -14.11811 -13.89904 -13.83967 -13.54725 -13.15718 -12.95565 -12.82185 -12.31375 -11.74307 -11.52690 -11.36913 -11.13565 -10.93578 -10.79911 -10.70392 -10.53486 -10.46211 -10.06583 -9.65350 -9.45149 -9.26398 -8.78826 -7.69039 -7.11874 -6.43261 -4.02998 2.07583 2.41224 2.55126 3.12926 3.13828 3.17033 3.29202 3.54552 3.93534 3.97297 4.19229 4.44823 4.53202 4.61846 4.63656 4.89470 4.93217 5.11639 5.27515 5.30330 5.54191 5.71543 6.02381 6.10479 6.20855 6.27640 6.29875 6.56243 6.80169 7.02479 7.06471 7.11934 7.18185 7.28640 7.35156 7.45062 7.84641 7.99648 8.01877 8.60547 9.02047 9.72810 10.74790 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.002985 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.730203 B = 9377.507965 C =10715.663786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.392 4.392 8 H 0.089 0.911 9 O -0.176 6.176 10 C 0.169 3.831 11 C -0.202 4.202 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.199 3.801 15 N -0.681 5.681 16 C 0.704 3.296 17 O -0.572 6.572 18 N -0.742 5.742 19 C 0.111 3.889 20 C 0.096 3.904 21 H 0.113 0.887 22 O -0.550 6.550 23 C 0.048 3.952 24 O -0.564 6.564 25 C -0.258 4.258 26 H 0.270 0.730 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.403 0.597 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.377 0.623 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.381 0.619 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.579 -12.277 4.502 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.080 6.080 10 C 0.115 3.885 11 C -0.222 4.222 12 C -0.082 4.082 13 C -0.227 4.227 14 C 0.105 3.895 15 N -0.327 5.327 16 C 0.404 3.596 17 O -0.448 6.448 18 N -0.399 5.399 19 C -0.014 4.014 20 C 0.036 3.964 21 H 0.130 0.870 22 O -0.355 6.355 23 C -0.031 4.031 24 O -0.369 6.369 25 C -0.280 4.280 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.238 0.762 31 H 0.236 0.764 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.225 0.775 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.651 -12.204 4.069 22.657 hybrid contribution 0.956 0.827 0.592 1.396 sum 19.607 -11.377 4.661 23.143 Atomic orbital electron populations 1.70024 1.05926 1.27733 1.46082 1.25270 0.95833 0.98774 0.96608 0.85802 0.78718 0.79920 0.79090 1.19537 1.20290 1.19586 1.21218 0.91622 0.80914 1.53075 0.89330 1.84021 1.33883 1.11351 1.78702 1.19069 0.89447 0.88112 0.91904 1.20239 1.00119 0.89998 1.11831 1.20518 0.93125 0.96904 0.97610 1.20551 0.95149 0.95931 1.11038 1.17173 0.80507 0.93976 0.97824 1.42568 1.07970 1.28377 1.53826 1.15864 0.81608 0.82434 0.79670 1.90952 1.63594 1.39020 1.51277 1.44887 1.05467 1.34004 1.55540 1.21713 0.91037 0.92274 0.96382 1.22150 0.91773 0.83926 0.98514 0.86955 1.86646 1.83939 1.34759 1.30151 1.22771 0.82238 0.98406 0.99724 1.86534 1.16873 1.54547 1.78982 1.20779 0.94352 0.97226 1.15626 0.91986 0.86404 0.86657 0.86316 0.76213 0.76448 0.90948 0.90379 0.77536 0.92792 0.92196 0.77166 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -10.90 9.44 30.89 0.29 -10.61 16 8 H 0.09 2.26 5.30 -52.49 -0.28 1.98 16 9 O -0.18 -5.03 9.76 0.04 0.00 -5.03 16 10 C 0.17 4.13 6.64 -39.13 -0.26 3.87 16 11 C -0.20 -4.38 9.99 -39.36 -0.39 -4.78 16 12 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 13 C -0.21 -4.02 8.65 -39.34 -0.34 -4.36 16 14 C 0.20 3.87 6.27 -83.72 -0.52 3.35 16 15 N -0.68 -10.49 5.35 -14.24 -0.08 -10.56 16 16 C 0.70 10.64 8.30 -86.92 -0.72 9.92 16 17 O -0.57 -10.78 14.06 5.29 0.07 -10.70 16 18 N -0.74 -7.75 5.51 -65.23 -0.36 -8.11 16 19 C 0.11 0.93 5.31 -4.05 -0.02 0.90 16 20 C 0.10 0.67 3.28 -26.73 -0.09 0.58 16 21 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 22 O -0.55 -4.57 13.25 -40.08 -0.53 -5.10 16 23 C 0.05 0.26 6.68 37.16 0.25 0.50 16 24 O -0.56 -3.88 13.62 -40.08 -0.55 -4.42 16 25 C -0.26 -5.65 9.04 -39.21 -0.35 -6.00 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 28 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.12 2.28 6.44 -52.49 -0.34 1.94 16 30 H 0.40 4.92 8.83 -40.82 -0.36 4.56 16 31 H 0.40 3.40 8.49 -40.82 -0.35 3.06 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.38 2.01 9.05 45.56 0.41 2.42 16 35 H 0.05 0.22 8.14 -51.92 -0.42 -0.20 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.38 0.86 9.12 45.56 0.42 1.28 16 38 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -36.61 333.30 -6.23 -42.83 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -2.89 Total: 12.47 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.66 Total: -7.23 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.32 Total: -43.22 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.00 Total: -25.26 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.61 -6.23 -42.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774035881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.881 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds