Wall clock time and date at job start Tue Mar 31 2020 03:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 5 5 C 1.34715 * 116.99993 * 89.99916 * 4 2 1 6 6 O 1.21482 * 119.99689 * 0.02562 * 5 4 2 7 7 C 1.47679 * 120.00018 * 180.02562 * 5 4 2 8 8 C 1.40967 * 127.24165 * 179.97438 * 7 5 4 9 9 N 1.31122 * 105.76881 * 179.97438 * 8 7 5 10 10 N 1.28520 * 109.07477 * 359.97438 * 9 8 7 11 11 C 1.46498 * 124.43508 * 179.97438 * 10 9 8 12 12 N 1.28587 * 111.12489 * 359.76348 * 10 9 8 13 13 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 14 14 O 1.21285 * 120.00040 * 114.99997 * 13 2 1 15 15 N 1.34778 * 119.99902 * 295.00139 * 13 2 1 16 16 C 1.46493 * 120.00087 * 359.97438 * 15 13 2 17 17 C 1.46505 * 119.99823 * 179.97438 * 15 13 2 18 18 C 1.50697 * 109.46900 * 89.99912 * 17 15 13 19 19 H 1.07995 * 120.00161 * 0.02562 * 18 17 15 20 20 C 1.37880 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31522 * 119.99535 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46712 * 60.00253 * 22 20 18 24 24 H 1.48495 * 109.47092 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47224 * 300.00309 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.07999 * 127.12164 * 359.92667 * 8 7 5 30 30 H 1.08993 * 109.47554 * 90.02836 * 11 10 9 31 31 H 1.09001 * 109.46577 * 210.02503 * 11 10 9 32 32 H 1.09003 * 109.47418 * 330.02167 * 11 10 9 33 33 H 1.09002 * 109.47115 * 89.99747 * 16 15 13 34 34 H 1.08998 * 109.47192 * 209.99907 * 16 15 13 35 35 H 1.08999 * 109.47064 * 329.99847 * 16 15 13 36 36 H 1.08997 * 109.46961 * 210.00478 * 17 15 13 37 37 H 1.09005 * 109.46984 * 329.99937 * 17 15 13 38 38 H 0.97003 * 119.99529 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2178 0.0668 -2.2851 6 8 1.9977 1.2611 -2.2541 7 6 2.7089 -0.5615 -3.5281 8 6 2.9727 0.0738 -4.7586 9 7 3.3875 -0.8722 -5.5663 10 7 3.3931 -1.9914 -4.9344 11 6 3.7988 -3.2714 -5.5203 12 7 3.0002 -1.8396 -3.7195 13 6 2.0324 -0.7104 1.2304 14 8 2.6531 -1.7467 1.1214 15 7 1.7920 -0.1942 2.4520 16 6 1.0427 1.0577 2.5836 17 6 2.2799 -0.8852 3.6481 18 6 3.6615 -0.3879 3.9870 19 1 4.1292 0.3676 3.3730 20 6 4.3282 -0.8966 5.0814 21 7 3.7584 -1.8162 5.8294 22 14 6.0405 -0.2797 5.5019 23 1 5.9905 1.1820 5.7598 24 1 6.5346 -0.9792 6.7150 25 1 6.9572 -0.5507 4.3655 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 2.8565 1.1225 -4.9887 30 1 4.8683 -3.4173 -5.3695 31 1 3.2503 -4.0812 -5.0392 32 1 3.5795 -3.2681 -6.5880 33 1 -0.0214 0.8372 2.6678 34 1 1.3755 1.5882 3.4758 35 1 1.2166 1.6793 1.7053 36 1 1.6073 -0.6862 4.4824 37 1 2.3162 -1.9580 3.4586 38 1 4.2276 -2.1744 6.5991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792519676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:43 Heat of formation + Delta-G solvation = -20.074072 kcal Electronic energy + Delta-G solvation = -23650.748614 eV Core-core repulsion = 19917.299871 eV Total energy + Delta-G solvation = -3733.448744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.85794 -41.87273 -40.49088 -37.74315 -36.70911 -35.00667 -34.86200 -33.97638 -32.93942 -29.66467 -29.20497 -27.65856 -26.41134 -25.67254 -24.04465 -23.24147 -22.06054 -20.46197 -19.30897 -18.70409 -18.57870 -18.23586 -17.96275 -17.43969 -17.11605 -16.90749 -16.41755 -15.91436 -15.78428 -14.86999 -14.82429 -14.33364 -14.16512 -13.94943 -13.70394 -13.66463 -13.51379 -13.34298 -13.18151 -13.05486 -12.81260 -12.63171 -12.52000 -12.26044 -12.20637 -12.04526 -11.98558 -11.73792 -11.70034 -10.65351 -10.65133 -10.62644 -9.52050 -8.24342 -6.39006 -0.14026 0.71792 0.87190 1.35743 1.39884 1.40969 1.47814 1.60917 1.72448 2.26801 2.40800 2.76834 3.05593 3.38340 3.52696 3.69066 3.82996 3.83536 4.24560 4.27980 4.35307 4.39983 4.52220 4.61834 4.62984 4.69752 4.80501 4.88821 4.94337 5.08514 5.12024 5.20796 5.39990 5.50750 5.77614 6.02969 6.34018 6.59786 6.69643 6.92160 7.19955 7.35263 8.82834 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.018193 B = 0.003551 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.716196 B = 7882.436431 C = 8630.982606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 H 0.124 0.876 4 O -0.333 6.333 5 C 0.563 3.437 6 O -0.500 6.500 7 C -0.062 4.062 8 C 0.052 3.948 9 N -0.293 5.293 10 N -0.129 5.129 11 C 0.085 3.915 12 N -0.243 5.243 13 C 0.499 3.501 14 O -0.580 6.580 15 N -0.598 5.598 16 C 0.067 3.933 17 C 0.261 3.739 18 C -0.549 4.549 19 H 0.052 0.948 20 C 0.010 3.990 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.281 1.281 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.241 0.759 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.000 1.000 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 4.402 -22.096 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.141 0.859 4 O -0.248 6.248 5 C 0.405 3.595 6 O -0.386 6.386 7 C -0.220 4.220 8 C -0.130 4.130 9 N -0.132 5.132 10 N -0.035 5.035 11 C -0.051 4.051 12 N -0.095 5.095 13 C 0.286 3.714 14 O -0.459 6.459 15 N -0.330 5.330 16 C -0.075 4.075 17 C 0.140 3.860 18 C -0.588 4.588 19 H 0.071 0.929 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.791 3.209 23 H -0.183 1.183 24 H -0.201 1.201 25 H -0.206 1.206 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.257 0.743 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.018 0.982 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.286 2.936 -22.448 23.248 hybrid contribution 0.777 0.650 1.087 1.486 sum -4.510 3.586 -21.361 22.124 Atomic orbital electron populations 1.22319 0.88831 1.04461 1.06298 1.22693 0.98134 0.96882 0.80224 0.85857 1.86734 1.76652 1.41567 1.19799 1.19472 0.73722 0.84181 0.82149 1.90831 1.49009 1.14772 1.84028 1.21828 1.13435 0.90999 0.95728 1.25333 0.98706 1.02102 0.86857 1.74054 1.20326 0.92680 1.26158 1.48753 1.41116 1.09942 1.03652 1.22879 1.04111 0.76435 1.01725 1.74654 1.12474 1.19670 1.02698 1.20632 0.80164 0.85432 0.85209 1.90680 1.42287 1.26215 1.86753 1.48045 1.54098 1.25408 1.05492 1.22229 0.96548 0.84428 1.04264 1.18841 0.93874 0.91757 0.81554 1.21688 1.02303 1.23252 1.11540 0.92940 1.25835 1.02349 0.94917 0.95833 1.70037 1.39895 1.28910 1.17689 0.85488 0.78815 0.79212 0.77429 1.18301 1.20093 1.20643 0.86894 0.91599 0.88930 0.74266 0.86942 0.86229 0.84584 0.89571 0.90620 0.89172 0.94703 0.98210 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 9.28 71.98 0.67 -3.23 16 2 C 0.08 2.61 2.17 29.85 0.06 2.68 16 3 H 0.12 3.69 6.15 -2.39 -0.01 3.68 16 4 O -0.33 -12.15 9.43 -49.88 -0.47 -12.62 16 5 C 0.56 17.60 7.94 70.32 0.56 18.16 16 6 O -0.50 -15.21 16.21 19.89 0.32 -14.89 16 7 C -0.06 -1.71 7.26 42.21 0.31 -1.41 16 8 C 0.05 1.10 12.04 85.47 1.03 2.13 16 9 N -0.29 -6.01 12.00 -56.14 -0.67 -6.69 16 10 N -0.13 -2.66 4.34 -206.55 -0.90 -3.56 16 11 C 0.09 0.76 11.55 127.77 1.48 2.24 16 12 N -0.24 -6.83 12.10 -48.21 -0.58 -7.42 16 13 C 0.50 22.22 7.10 87.66 0.62 22.84 16 14 O -0.58 -32.51 16.09 15.70 0.25 -32.26 16 15 N -0.60 -25.68 2.86 -851.14 -2.43 -28.12 16 16 C 0.07 1.92 8.92 127.77 1.14 3.06 16 17 C 0.26 14.14 5.16 85.63 0.44 14.58 16 18 C -0.55 -32.09 9.39 25.60 0.24 -31.85 16 19 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 20 C 0.01 0.58 5.46 84.65 0.46 1.05 16 21 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 22 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 26 H 0.11 2.17 5.12 -2.39 -0.01 2.16 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.24 3.25 8.06 -2.91 -0.02 3.22 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.09 1.91 7.02 -2.39 -0.02 1.89 16 34 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 35 H 0.09 2.05 6.08 -2.39 -0.01 2.04 16 36 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 37 H 0.00 -0.01 7.42 -2.38 -0.02 -0.03 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -84.69 336.27 5.93 -78.76 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.09 Total: 5.04 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 7.01 Total: 30.25 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -4.30 Total: -101.65 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: 0.10 Total: -59.77 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -84.69 5.93 -78.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792519676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.682 kcal (2) G-P(sol) polarization free energy of solvation -84.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds