Wall clock time and date at job start Tue Mar 31 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38493 * 125.83769 * 2 1 4 4 C 1.40117 * 125.92595 * 359.97438 * 3 2 1 5 5 H 1.07997 * 120.00183 * 359.97438 * 4 3 2 6 6 C 1.40045 * 119.99597 * 179.97438 * 4 3 2 7 7 N 1.30789 * 120.00263 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99763 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47397 * 89.99559 * 8 6 4 10 10 H 1.48500 * 109.47037 * 209.99971 * 8 6 4 11 11 H 1.48502 * 109.46999 * 329.99714 * 8 6 4 12 12 N 1.32243 * 108.14744 * 180.02562 * 3 2 1 13 13 N 1.40163 * 107.75817 * 359.97438 * 12 3 2 14 14 C 1.46497 * 126.14539 * 180.02562 * 13 12 3 15 15 N 1.46904 * 109.46792 * 90.03152 * 14 13 12 16 16 C 1.46903 * 111.00215 * 66.04623 * 15 14 13 17 17 C 1.53306 * 108.64188 * 181.91057 * 16 15 14 18 18 O 1.42919 * 108.73333 * 71.29325 * 17 16 15 19 19 C 1.42908 * 114.20976 * 307.72186 * 18 17 16 20 20 H 1.09004 * 115.22775 * 232.04460 * 19 18 17 21 21 C 1.50389 * 115.65259 * 89.37151 * 19 18 17 22 22 C 1.46333 * 110.99878 * 301.33261 * 15 14 13 23 23 H 1.09007 * 115.04093 * 291.77317 * 22 15 14 24 24 C 1.34733 * 125.82921 * 180.30815 * 2 1 3 25 25 S 1.71194 * 125.97755 * 359.97438 * 24 2 1 26 26 H 1.08997 * 109.47529 * 89.99971 * 1 2 3 27 27 H 1.08998 * 109.47062 * 210.00751 * 1 2 3 28 28 H 1.09006 * 109.46486 * 330.00244 * 1 2 3 29 29 H 0.97003 * 120.00345 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47316 * 330.02994 * 14 13 12 31 31 H 1.09007 * 109.47066 * 210.02565 * 14 13 12 32 32 H 1.08998 * 109.60891 * 62.16178 * 16 15 14 33 33 H 1.08994 * 109.60318 * 301.65864 * 16 15 14 34 34 H 1.09002 * 109.61741 * 191.11269 * 17 16 15 35 35 H 1.08998 * 109.61939 * 311.47375 * 17 16 15 36 36 H 1.09004 * 117.75794 * 141.67537 * 21 19 18 37 37 H 1.09004 * 116.91420 * 357.18690 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1227 0.0000 4 6 1.8374 2.4535 -0.0005 5 1 0.7801 2.6737 -0.0014 6 6 2.7703 3.4981 0.0001 7 7 4.0507 3.2314 0.0006 8 14 2.1857 5.2723 0.0001 9 1 2.0301 5.7422 1.4002 10 1 3.1828 6.1220 -0.6993 11 1 0.8796 5.3631 -0.7005 12 7 3.5358 0.7209 -0.0006 13 7 3.5375 -0.6807 -0.0003 14 6 4.7215 -1.5434 -0.0003 15 7 5.1168 -1.8321 1.3848 16 6 4.0961 -2.6395 2.0663 17 6 4.5392 -2.8676 3.5161 18 8 4.4228 -1.6356 4.2309 19 6 5.0782 -0.5306 3.6050 20 1 5.7636 0.0259 4.2442 21 6 4.2451 0.2518 2.6275 22 6 5.4037 -0.5977 2.1164 23 1 6.2940 -0.0622 1.7866 24 6 2.2537 -1.0923 -0.0059 25 16 1.7192 -2.7187 -0.0140 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3632 0.8901 0.5138 29 1 4.6968 3.9549 0.0014 30 1 5.5394 -1.0380 -0.5137 31 1 4.4911 -2.4766 -0.5143 32 1 3.9911 -3.5993 1.5605 33 1 3.1432 -2.1105 2.0539 34 1 3.9021 -3.6211 3.9792 35 1 5.5758 -3.2042 3.5333 36 1 4.3679 1.3347 2.6085 37 1 3.2341 -0.1103 2.4402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793611774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:22 Heat of formation + Delta-G solvation = 85.688632 kcal Electronic energy + Delta-G solvation = -23306.179436 eV Core-core repulsion = 20020.069778 eV Total energy + Delta-G solvation = -3286.109658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19847 -39.82948 -36.00595 -34.26903 -33.90238 -33.24823 -30.70475 -29.06377 -26.93145 -26.65783 -24.23519 -23.71910 -21.92806 -21.38222 -20.91430 -18.97083 -17.84974 -17.01641 -16.49366 -16.23914 -15.77682 -15.63882 -14.99277 -14.78071 -14.64537 -14.04115 -14.00099 -13.62206 -13.13198 -12.37120 -12.33394 -12.13728 -11.90491 -11.82118 -11.58808 -11.27278 -11.13563 -10.93169 -10.81502 -10.66337 -10.59187 -10.14445 -9.82221 -9.59414 -9.42783 -9.02860 -8.91804 -8.27322 -7.12070 -6.85801 -6.71614 -5.19931 2.24540 2.49792 2.72838 2.86713 2.89735 3.32286 3.46174 3.59201 3.68800 4.03810 4.12873 4.33437 4.77238 4.92059 5.17103 5.23075 5.29535 5.39968 5.51545 5.60649 5.66313 5.78270 5.81327 5.92614 6.02996 6.17904 6.20445 6.35740 6.49383 6.51356 6.58254 6.73343 6.93046 7.03699 7.16304 7.40337 7.49137 7.68524 8.16225 8.28838 9.07107 9.85410 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.007137 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.889868 B = 3922.318763 C = 4912.312946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.514 5.514 3 C 0.372 3.628 4 C -0.438 4.438 5 H 0.095 0.905 6 C 0.079 3.921 7 N -0.736 5.736 8 Si 0.926 3.074 9 H -0.266 1.266 10 H -0.273 1.273 11 H -0.260 1.260 12 N -0.329 5.329 13 N -0.397 5.397 14 C 0.313 3.687 15 N -0.499 5.499 16 C 0.012 3.988 17 C 0.061 3.939 18 O -0.360 6.360 19 C 0.015 3.985 20 H 0.126 0.874 21 C -0.174 4.174 22 C 0.012 3.988 23 H 0.128 0.872 24 C 0.462 3.538 25 S -0.714 6.714 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.285 0.715 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.108 0.892 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.984 -0.167 3.034 3.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.215 5.215 3 C 0.123 3.877 4 C -0.480 4.480 5 H 0.113 0.887 6 C -0.148 4.148 7 N -0.360 5.360 8 Si 0.749 3.251 9 H -0.191 1.191 10 H -0.198 1.198 11 H -0.183 1.183 12 N -0.160 5.160 13 N -0.187 5.187 14 C 0.103 3.897 15 N -0.222 5.222 16 C -0.116 4.116 17 C -0.016 4.016 18 O -0.278 6.278 19 C -0.044 4.044 20 H 0.144 0.856 21 C -0.214 4.214 22 C -0.097 4.097 23 H 0.146 0.854 24 C 0.093 3.907 25 S -0.590 6.590 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.334 -1.071 3.176 4.728 hybrid contribution -1.390 1.909 -0.348 2.387 sum 1.945 0.839 2.828 3.533 Atomic orbital electron populations 1.21761 0.75536 1.04124 1.02994 1.46020 1.08249 1.05077 1.62116 1.21295 0.84167 0.88415 0.93850 1.18340 0.95392 0.85646 1.48577 0.88671 1.25785 0.94327 1.01797 0.92885 1.69856 1.01496 1.35177 1.29489 0.86001 0.79786 0.79806 0.79528 1.19082 1.19793 1.18349 1.79395 1.13643 0.82313 1.40634 1.50345 1.04039 1.07844 1.56444 1.22497 0.83552 0.93200 0.90485 1.62474 1.41634 1.15833 1.02294 1.23233 0.94283 0.99596 0.94490 1.22798 1.01091 0.86185 0.91521 1.87873 1.74776 1.17128 1.48037 1.22901 1.00328 0.91662 0.89475 0.85636 1.23246 0.96936 0.99978 1.01212 1.22685 1.00826 0.92953 0.93269 0.85409 1.23031 0.85259 0.92469 0.89989 1.92772 1.85413 0.98927 1.81887 0.91476 0.89264 0.89795 0.90400 0.87473 0.86874 0.88097 0.91567 0.88517 0.92311 0.87320 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.64 59.85 0.64 2.38 16 2 N -0.51 -11.18 3.17 -124.66 -0.39 -11.58 16 3 C 0.37 8.64 7.49 -155.28 -1.16 7.47 16 4 C -0.44 -9.78 8.98 -38.20 -0.34 -10.12 16 5 H 0.10 1.94 7.11 -52.49 -0.37 1.57 16 6 C 0.08 1.69 5.50 -17.32 -0.10 1.59 16 7 N -0.74 -16.61 11.90 55.55 0.66 -15.95 16 8 Si 0.93 16.10 29.56 -169.99 -5.03 11.07 16 9 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 10 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 11 H -0.26 -4.45 7.11 56.52 0.40 -4.05 16 12 N -0.33 -7.65 8.52 31.21 0.27 -7.38 16 13 N -0.40 -8.53 2.17 -65.05 -0.14 -8.67 16 14 C 0.31 5.74 6.25 -63.31 -0.40 5.35 16 15 N -0.50 -8.65 5.00 -231.39 -1.16 -9.81 16 16 C 0.01 0.21 4.09 -3.66 -0.01 0.19 16 17 C 0.06 0.97 6.99 37.32 0.26 1.23 16 18 O -0.36 -6.49 10.80 -35.23 -0.38 -6.87 16 19 C 0.01 0.25 6.99 -28.28 -0.20 0.05 16 20 H 0.13 1.83 8.14 -51.93 -0.42 1.41 16 21 C -0.17 -3.41 7.09 -28.30 -0.20 -3.61 16 22 C 0.01 0.21 5.67 -68.53 -0.39 -0.17 16 23 H 0.13 2.13 8.14 -51.93 -0.42 1.71 16 24 C 0.46 10.39 6.33 -86.93 -0.55 9.84 16 25 S -0.71 -16.58 27.20 -107.50 -2.92 -19.50 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.56 7.62 -51.93 -0.40 1.17 16 28 H 0.08 1.31 7.32 -51.93 -0.38 0.93 16 29 H 0.28 5.88 8.30 -40.82 -0.34 5.54 16 30 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 31 H 0.11 2.05 7.62 -51.93 -0.40 1.66 16 32 H 0.10 1.80 7.95 -51.93 -0.41 1.39 16 33 H 0.07 1.42 4.39 -51.93 -0.23 1.20 16 34 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.11 2.26 8.14 -51.93 -0.42 1.83 16 37 H 0.09 1.98 6.14 -51.93 -0.32 1.66 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -27.43 309.11 -11.49 -38.91 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -4.60 Total: 10.92 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: -2.45 Total: 14.20 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.77 Total: -53.39 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.38 Total: -6.87 kcal Atomic # 14 Polarization: 16.10 SS G_CDS: -5.03 Total: 11.07 kcal Atomic # 16 Polarization: -16.58 SS G_CDS: -2.92 Total: -19.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.43 -11.49 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793611774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.601 kcal (2) G-P(sol) polarization free energy of solvation -27.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds