Wall clock time and date at job start Tue Mar 31 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38493 * 125.83769 * 2 1 4 4 C 1.40117 * 125.92595 * 359.97438 * 3 2 1 5 5 H 1.07997 * 120.00183 * 359.97438 * 4 3 2 6 6 C 1.40045 * 119.99597 * 179.97438 * 4 3 2 7 7 N 1.30789 * 120.00263 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99763 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47397 * 89.99559 * 8 6 4 10 10 H 1.48500 * 109.47037 * 209.99971 * 8 6 4 11 11 H 1.48502 * 109.46999 * 329.99714 * 8 6 4 12 12 N 1.32243 * 108.14744 * 180.02562 * 3 2 1 13 13 N 1.40163 * 107.75817 * 359.97438 * 12 3 2 14 14 C 1.46497 * 126.14539 * 180.02562 * 13 12 3 15 15 N 1.46904 * 109.46792 * 90.03152 * 14 13 12 16 16 C 1.46903 * 111.00215 * 66.04623 * 15 14 13 17 17 C 1.53306 * 108.64188 * 181.91057 * 16 15 14 18 18 O 1.42919 * 108.73333 * 71.29325 * 17 16 15 19 19 C 1.42908 * 114.20976 * 307.72186 * 18 17 16 20 20 H 1.09004 * 115.22775 * 232.04460 * 19 18 17 21 21 C 1.50389 * 115.65259 * 89.37151 * 19 18 17 22 22 C 1.46333 * 110.99878 * 301.33261 * 15 14 13 23 23 H 1.09007 * 115.04093 * 291.77317 * 22 15 14 24 24 C 1.34733 * 125.82921 * 180.30815 * 2 1 3 25 25 S 1.71194 * 125.97755 * 359.97438 * 24 2 1 26 26 H 1.08997 * 109.47529 * 89.99971 * 1 2 3 27 27 H 1.08998 * 109.47062 * 210.00751 * 1 2 3 28 28 H 1.09006 * 109.46486 * 330.00244 * 1 2 3 29 29 H 0.97003 * 120.00345 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47316 * 330.02994 * 14 13 12 31 31 H 1.09007 * 109.47066 * 210.02565 * 14 13 12 32 32 H 1.08998 * 109.60891 * 62.16178 * 16 15 14 33 33 H 1.08994 * 109.60318 * 301.65864 * 16 15 14 34 34 H 1.09002 * 109.61741 * 191.11269 * 17 16 15 35 35 H 1.08998 * 109.61939 * 311.47375 * 17 16 15 36 36 H 1.09004 * 117.75794 * 141.67537 * 21 19 18 37 37 H 1.09004 * 116.91420 * 357.18690 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1227 0.0000 4 6 1.8374 2.4535 -0.0005 5 1 0.7801 2.6737 -0.0014 6 6 2.7703 3.4981 0.0001 7 7 4.0507 3.2314 0.0006 8 14 2.1857 5.2723 0.0001 9 1 2.0301 5.7422 1.4002 10 1 3.1828 6.1220 -0.6993 11 1 0.8796 5.3631 -0.7005 12 7 3.5358 0.7209 -0.0006 13 7 3.5375 -0.6807 -0.0003 14 6 4.7215 -1.5434 -0.0003 15 7 5.1168 -1.8321 1.3848 16 6 4.0961 -2.6395 2.0663 17 6 4.5392 -2.8676 3.5161 18 8 4.4228 -1.6356 4.2309 19 6 5.0782 -0.5306 3.6050 20 1 5.7636 0.0259 4.2442 21 6 4.2451 0.2518 2.6275 22 6 5.4037 -0.5977 2.1164 23 1 6.2940 -0.0622 1.7866 24 6 2.2537 -1.0923 -0.0059 25 16 1.7192 -2.7187 -0.0140 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3632 0.8901 0.5138 29 1 4.6968 3.9549 0.0014 30 1 5.5394 -1.0380 -0.5137 31 1 4.4911 -2.4766 -0.5143 32 1 3.9911 -3.5993 1.5605 33 1 3.1432 -2.1105 2.0539 34 1 3.9021 -3.6211 3.9792 35 1 5.5758 -3.2042 3.5333 36 1 4.3679 1.3347 2.6085 37 1 3.2341 -0.1103 2.4402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793611774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:22 Heat of formation + Delta-G solvation = 70.219633 kcal Electronic energy + Delta-G solvation = -23306.850222 eV Core-core repulsion = 20020.069778 eV Total energy + Delta-G solvation = -3286.780444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.84720 -41.29706 -37.50309 -35.86117 -35.45470 -34.77020 -32.35661 -30.57193 -28.48279 -28.28021 -25.77068 -25.12975 -23.54879 -22.89951 -22.59366 -20.41905 -19.47616 -18.59340 -17.99135 -17.72352 -17.42405 -17.21067 -16.47019 -16.30115 -16.24148 -15.46352 -15.45526 -15.12684 -14.60112 -13.86924 -13.81972 -13.60900 -13.47237 -13.32315 -13.04587 -12.83072 -12.67993 -12.48404 -12.28737 -12.19334 -12.01721 -11.71460 -11.37582 -11.21131 -10.97901 -10.60956 -10.50849 -9.77167 -8.80012 -8.63885 -8.50410 -6.92767 0.52938 0.79395 1.28284 1.44190 1.57226 1.67166 1.86095 2.11993 2.25577 2.42524 2.76592 2.88564 3.10253 3.46900 3.67111 3.81609 3.87055 3.94926 4.05957 4.26441 4.32775 4.33942 4.39417 4.53521 4.60817 4.65365 4.79306 4.85887 4.90064 5.00836 5.03063 5.10316 5.26948 5.54713 5.67570 5.87292 6.01890 6.05409 6.48324 6.59594 7.34230 8.25031 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.007137 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.889868 B = 3922.318763 C = 4912.312946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.518 5.518 3 C 0.352 3.648 4 C -0.456 4.456 5 H 0.110 0.890 6 C 0.042 3.958 7 N -0.766 5.766 8 Si 0.997 3.003 9 H -0.264 1.264 10 H -0.271 1.271 11 H -0.253 1.253 12 N -0.344 5.344 13 N -0.391 5.391 14 C 0.306 3.694 15 N -0.485 5.485 16 C 0.019 3.981 17 C 0.063 3.937 18 O -0.375 6.375 19 C 0.035 3.965 20 H 0.158 0.842 21 C -0.184 4.184 22 C 0.016 3.984 23 H 0.141 0.859 24 C 0.453 3.547 25 S -0.740 6.740 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.291 0.709 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.030 0.970 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.506 0.675 3.550 4.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.218 5.218 3 C 0.104 3.896 4 C -0.497 4.497 5 H 0.128 0.872 6 C -0.181 4.181 7 N -0.390 5.390 8 Si 0.817 3.183 9 H -0.189 1.189 10 H -0.195 1.195 11 H -0.176 1.176 12 N -0.176 5.176 13 N -0.180 5.180 14 C 0.097 3.903 15 N -0.207 5.207 16 C -0.109 4.109 17 C -0.013 4.013 18 O -0.294 6.294 19 C -0.023 4.023 20 H 0.175 0.825 21 C -0.224 4.224 22 C -0.094 4.094 23 H 0.158 0.842 24 C 0.081 3.919 25 S -0.616 6.616 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.048 0.952 34 H 0.132 0.868 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.853 -0.252 3.692 5.342 hybrid contribution -1.543 1.644 -0.509 2.312 sum 2.310 1.391 3.183 4.171 Atomic orbital electron populations 1.21983 0.73623 1.04932 1.04132 1.46274 1.09545 1.04473 1.61526 1.21628 0.84580 0.89119 0.94313 1.18803 0.96524 0.85691 1.48694 0.87230 1.26661 0.94175 1.05438 0.91874 1.69921 1.02648 1.36731 1.29717 0.84940 0.79435 0.74514 0.79434 1.18891 1.19547 1.17590 1.79318 1.14194 0.83048 1.41028 1.50587 1.04389 1.07556 1.55439 1.22744 0.83140 0.93060 0.91354 1.62523 1.40859 1.15598 1.01754 1.23105 0.92756 0.98895 0.96107 1.22943 1.02716 0.85767 0.89849 1.87854 1.75238 1.17926 1.48370 1.23118 0.98964 0.90836 0.89424 0.82487 1.22895 0.95676 0.99115 1.04684 1.22829 1.00037 0.92437 0.94068 0.84154 1.22993 0.85827 0.92328 0.90725 1.92680 1.85724 0.99973 1.83215 0.90106 0.89530 0.87881 0.89807 0.86297 0.86722 0.88211 0.95196 0.86757 0.90167 0.89044 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.32 10.64 127.77 1.36 4.68 16 2 N -0.52 -22.78 3.17 -548.30 -1.74 -24.52 16 3 C 0.35 16.53 7.49 133.52 1.00 17.53 16 4 C -0.46 -20.20 8.98 23.16 0.21 -19.99 16 5 H 0.11 4.36 7.11 -2.91 -0.02 4.34 16 6 C 0.04 1.79 5.50 85.29 0.47 2.25 16 7 N -0.77 -34.44 11.90 21.84 0.26 -34.18 16 8 Si 1.00 31.91 29.56 68.60 2.03 33.94 16 9 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 10 H -0.27 -8.51 7.11 99.48 0.71 -7.80 16 11 H -0.25 -7.74 7.11 99.48 0.71 -7.03 16 12 N -0.34 -16.23 8.52 -55.17 -0.47 -16.70 16 13 N -0.39 -16.97 2.17 -359.71 -0.78 -17.75 16 14 C 0.31 11.21 6.25 170.81 1.07 12.27 16 15 N -0.48 -16.40 5.00 -885.99 -4.43 -20.83 16 16 C 0.02 0.68 4.09 86.41 0.35 1.03 16 17 C 0.06 1.90 6.99 72.08 0.50 2.40 16 18 O -0.38 -12.93 10.80 -148.98 -1.61 -14.54 16 19 C 0.03 1.13 6.99 29.59 0.21 1.34 16 20 H 0.16 4.13 8.14 -2.38 -0.02 4.11 16 21 C -0.18 -7.25 7.09 29.58 0.21 -7.04 16 22 C 0.02 0.54 5.67 44.69 0.25 0.79 16 23 H 0.14 4.44 8.14 -2.38 -0.02 4.42 16 24 C 0.45 20.68 6.33 179.06 1.13 21.81 16 25 S -0.74 -34.76 27.20 -56.49 -1.54 -36.29 16 26 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 27 H 0.09 3.05 7.62 -2.39 -0.02 3.03 16 28 H 0.10 3.14 7.32 -2.38 -0.02 3.12 16 29 H 0.29 11.90 8.30 -92.71 -0.77 11.13 16 30 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 31 H 0.11 4.16 7.62 -2.38 -0.02 4.14 16 32 H 0.10 3.52 7.95 -2.39 -0.02 3.50 16 33 H 0.03 1.30 4.39 -2.39 -0.01 1.29 16 34 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 3.88 8.14 -2.39 -0.02 3.86 16 37 H 0.05 2.28 6.14 -2.39 -0.01 2.26 16 Total: -1.00 -58.99 309.11 -0.41 -59.40 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 1.10 Total: 34.40 kcal Atomic # 6 Polarization: 30.32 SS G_CDS: 6.76 Total: 37.08 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -7.16 Total: -113.98 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -1.61 Total: -14.54 kcal Atomic # 14 Polarization: 31.91 SS G_CDS: 2.03 Total: 33.94 kcal Atomic # 16 Polarization: -34.76 SS G_CDS: -1.54 Total: -36.29 kcal Total: -58.99 -0.41 -59.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793611774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.624 kcal (2) G-P(sol) polarization free energy of solvation -58.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds