Wall clock time and date at job start Tue Mar 31 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48501 * 109.47332 * 240.00144 * 3 2 1 5 5 H 1.48501 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46793 * 120.00106 * 3 2 1 7 7 C 1.37877 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00036 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.47203 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00021 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46879 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.47151 * 65.00398 * 12 11 10 14 14 C 1.34732 * 116.99693 * 180.02562 * 13 12 11 15 15 O 1.21493 * 120.00025 * 359.97438 * 14 13 12 16 16 C 1.47595 * 119.99927 * 180.27283 * 14 13 12 17 17 C 1.41336 * 125.95871 * 179.72437 * 16 14 13 18 18 C 1.34841 * 107.70601 * 179.97438 * 17 16 14 19 19 N 1.36409 * 107.93542 * 0.11047 * 18 17 16 20 20 N 1.32169 * 125.95745 * 359.41398 * 16 14 13 21 21 C 1.46729 * 123.62092 * 179.77176 * 19 18 17 22 22 C 1.53529 * 107.95877 * 343.02965 * 21 19 18 23 23 C 1.53225 * 109.29690 * 47.29545 * 22 21 19 24 24 O 1.36028 * 128.62856 * 180.16394 * 18 17 16 25 25 H 0.96997 * 119.99564 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47490 * 60.00091 * 9 7 2 27 27 H 1.09000 * 109.47244 * 300.00230 * 9 7 2 28 28 H 1.09001 * 109.47355 * 60.00204 * 11 10 9 29 29 H 1.09002 * 109.47045 * 300.00281 * 11 10 9 30 30 H 1.08998 * 109.47123 * 304.99758 * 12 11 10 31 31 H 1.09004 * 109.46684 * 184.99716 * 12 11 10 32 32 H 1.07995 * 126.14600 * 359.96021 * 17 16 14 33 33 H 1.09003 * 109.76124 * 223.41346 * 21 19 18 34 34 H 1.09000 * 109.80376 * 102.67403 * 21 19 18 35 35 H 1.08998 * 109.49859 * 287.34340 * 22 21 19 36 36 H 1.09001 * 109.49593 * 167.23891 * 22 21 19 37 37 H 1.09004 * 109.50076 * 175.45859 * 23 22 21 38 38 H 1.08990 * 109.51034 * 55.33905 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0017 11 6 1.5652 -4.8754 -0.0013 12 6 2.6482 -5.9562 -0.0020 13 8 3.4003 -5.8886 1.2382 14 6 4.3989 -6.7789 1.3972 15 8 4.6345 -7.5899 0.5238 16 6 5.2023 -6.7734 2.6353 17 6 6.2701 -7.6493 2.9357 18 6 6.7402 -7.3196 4.1558 19 7 6.0002 -6.2729 4.6223 20 7 5.0524 -5.9448 3.6541 21 6 6.2185 -5.6421 5.9289 22 6 7.0627 -6.5998 6.7818 23 6 8.2498 -7.1026 5.9537 24 8 7.7626 -7.8843 4.8529 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5570 0.8897 28 1 0.9440 -4.9824 -0.8906 29 1 0.9460 -4.9826 0.8894 30 1 3.3211 -5.7956 -0.8443 31 1 2.1820 -6.9375 -0.0911 32 1 6.6425 -8.4405 2.3020 33 1 5.2602 -5.4621 6.4161 34 1 6.7490 -4.6987 5.7995 35 1 6.4505 -7.4467 7.0917 36 1 7.4304 -6.0741 7.6630 37 1 8.8954 -7.7185 6.5798 38 1 8.8150 -6.2516 5.5737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815239033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:44 Heat of formation + Delta-G solvation = -109.584007 kcal Electronic energy + Delta-G solvation = -22976.496083 eV Core-core repulsion = 19206.873146 eV Total energy + Delta-G solvation = -3769.622937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.01446 -41.41177 -39.57512 -38.72532 -37.48237 -35.73247 -34.95315 -32.43962 -31.49608 -30.70499 -29.08088 -27.69925 -25.72328 -24.56788 -24.16029 -23.26950 -21.58091 -20.92862 -19.59838 -18.71858 -18.42561 -17.99377 -17.62235 -17.28465 -16.97754 -16.64088 -16.51882 -16.23343 -16.15972 -15.78115 -15.27326 -15.16232 -14.54318 -14.32890 -14.21710 -13.77858 -13.42544 -13.23123 -12.94337 -12.72024 -12.69577 -12.49613 -12.45652 -12.14691 -12.11104 -11.93340 -11.82607 -11.77584 -11.30061 -10.89705 -10.41045 -10.27202 -9.68838 -8.32657 -6.44969 -0.09995 0.85490 0.89816 1.39058 1.40140 1.44220 1.52653 1.90380 2.11400 2.34262 2.95200 3.00892 3.07071 3.46141 3.54254 3.87511 3.91366 3.93876 4.04471 4.11445 4.28760 4.36115 4.41869 4.49707 4.50676 4.52508 4.64034 4.66509 4.84850 4.91270 5.00080 5.15597 5.16166 5.20121 5.53438 5.94779 6.07653 6.10625 6.49201 6.57333 6.79065 7.26409 8.79488 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.003127 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.176050 B = 8951.836569 C =10306.638156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.058 0.942 9 C 0.208 3.792 10 O -0.411 6.411 11 C 0.053 3.947 12 C 0.075 3.925 13 O -0.346 6.346 14 C 0.554 3.446 15 O -0.510 6.510 16 C 0.042 3.958 17 C -0.239 4.239 18 C 0.274 3.726 19 N -0.382 5.382 20 N -0.243 5.243 21 C 0.106 3.894 22 C -0.162 4.162 23 C 0.035 3.965 24 O -0.292 6.292 25 H 0.272 0.728 26 H -0.005 1.005 27 H -0.012 1.012 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.177 0.823 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.070 -16.091 15.944 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.590 4.590 8 H 0.076 0.924 9 C 0.134 3.866 10 O -0.331 6.331 11 C -0.023 4.023 12 C 0.003 3.997 13 O -0.261 6.261 14 C 0.396 3.604 15 O -0.397 6.397 16 C -0.121 4.121 17 C -0.268 4.268 18 C 0.107 3.893 19 N -0.181 5.181 20 N -0.075 5.075 21 C -0.012 4.012 22 C -0.200 4.200 23 C -0.039 4.039 24 O -0.199 6.199 25 H 0.081 0.919 26 H 0.012 0.988 27 H 0.006 0.994 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.195 0.805 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.667 -15.405 16.195 27.296 hybrid contribution -0.015 0.238 -0.499 0.553 sum 15.652 -15.167 15.696 26.859 Atomic orbital electron populations 1.70055 1.07661 1.28778 1.50308 1.25949 0.96007 1.03304 0.93817 0.85243 0.78143 0.76735 0.79337 1.19006 1.19658 1.19174 1.21363 0.94035 0.91046 1.52581 0.92361 1.19864 0.88540 0.84354 0.93871 1.87874 1.35599 1.14282 1.95334 1.22670 0.94418 0.83244 1.01988 1.23390 0.93177 0.99744 0.83433 1.86727 1.43244 1.53761 1.42350 1.19727 0.78077 0.77887 0.84702 1.90819 1.68319 1.38396 1.42157 1.20726 0.99091 0.98576 0.93719 1.20234 1.02203 1.08073 0.96327 1.19344 0.89180 0.89234 0.91523 1.49860 1.25146 1.26913 1.16218 1.77852 1.10374 1.20928 0.98378 1.22624 1.04005 0.97819 0.76773 1.22690 0.96686 1.00692 0.99933 1.23638 0.96378 0.97874 0.85976 1.86685 1.44707 1.43833 1.44672 0.91937 0.98774 0.99435 0.89323 0.92733 0.90261 0.86490 0.80535 0.86854 0.87337 0.89325 0.82933 0.82732 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 2 C 0.01 0.46 5.46 84.65 0.46 0.93 16 3 Si 0.98 45.26 29.54 68.60 2.03 47.29 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.55 -34.10 9.43 25.60 0.24 -33.86 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 12.09 5.69 71.23 0.41 12.50 16 10 O -0.41 -21.25 10.30 -145.57 -1.50 -22.75 16 11 C 0.05 2.05 6.33 71.98 0.46 2.51 16 12 C 0.08 2.53 5.85 71.98 0.42 2.95 16 13 O -0.35 -13.28 10.20 -53.76 -0.55 -13.83 16 14 C 0.55 19.73 7.97 70.29 0.56 20.29 16 15 O -0.51 -18.48 16.69 19.86 0.33 -18.15 16 16 C 0.04 1.39 7.13 42.33 0.30 1.69 16 17 C -0.24 -6.49 10.58 22.25 0.24 -6.25 16 18 C 0.27 6.30 7.57 83.20 0.63 6.93 16 19 N -0.38 -8.95 4.08 -457.15 -1.87 -10.81 16 20 N -0.24 -7.93 12.67 -48.19 -0.61 -8.54 16 21 C 0.11 1.30 7.41 86.51 0.64 1.94 16 22 C -0.16 -0.71 6.16 30.85 0.19 -0.52 16 23 C 0.04 0.23 7.00 72.06 0.50 0.73 16 24 O -0.29 -4.89 10.65 -93.87 -1.00 -5.88 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 27 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 28 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.12 3.06 8.14 -2.38 -0.02 3.04 16 32 H 0.18 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.15 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H 0.16 0.00 8.14 -2.38 -0.02 -0.02 16 38 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -81.14 337.18 3.24 -77.90 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: 1.07 Total: 1.23 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 5.05 Total: 9.82 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -2.19 Total: -75.64 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -2.72 Total: -60.61 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -81.14 3.24 -77.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815239033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.684 kcal (2) G-P(sol) polarization free energy of solvation -81.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds