Wall clock time and date at job start Tue Mar 31 2020 03:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99933 * 2 1 4 4 H 1.48510 * 109.47227 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47316 * 299.99752 * 3 2 1 6 6 H 1.48506 * 109.47057 * 59.99779 * 3 2 1 7 7 C 1.37876 * 120.00492 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00810 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99758 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99799 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47082 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46707 * 65.00376 * 12 11 10 14 14 C 1.34828 * 116.99801 * 179.97438 * 13 12 11 15 15 O 1.21584 * 120.00039 * 359.97438 * 14 13 12 16 16 C 1.46759 * 119.99571 * 180.02562 * 14 13 12 17 17 C 1.41762 * 126.57879 * 359.96180 * 16 14 13 18 18 N 1.30533 * 108.18414 * 180.02562 * 17 16 14 19 19 N 1.39353 * 109.09326 * 359.95063 * 18 17 16 20 20 C 1.35133 * 108.47734 * 0.10909 * 19 18 17 21 21 O 1.35440 * 123.88002 * 179.85389 * 20 19 18 22 22 C 1.43537 * 115.05814 * 344.47792 * 21 20 19 23 23 C 1.53255 * 109.23314 * 46.87551 * 22 21 20 24 24 C 1.46797 * 127.96377 * 180.16371 * 19 18 17 25 25 H 0.96994 * 120.00119 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47013 * 60.00167 * 9 7 2 27 27 H 1.09000 * 109.46950 * 300.00062 * 9 7 2 28 28 H 1.09007 * 109.46769 * 60.00979 * 11 10 9 29 29 H 1.08993 * 109.47647 * 300.00577 * 11 10 9 30 30 H 1.08994 * 109.47145 * 305.00966 * 12 11 10 31 31 H 1.08997 * 109.47426 * 185.00435 * 12 11 10 32 32 H 1.08003 * 125.90263 * 0.02562 * 17 16 14 33 33 H 1.09002 * 109.52026 * 166.81802 * 22 21 20 34 34 H 1.09004 * 109.51795 * 286.93757 * 22 21 20 35 35 H 1.08999 * 109.50818 * 55.85612 * 23 22 21 36 36 H 1.08991 * 109.51165 * 175.99906 * 23 22 21 37 37 H 1.08995 * 109.76051 * 282.51368 * 24 19 18 38 38 H 1.08995 * 109.75796 * 43.22425 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 8 3.4003 -5.8884 1.2406 14 6 4.3989 -6.7801 1.4003 15 8 4.6341 -7.5924 0.5268 16 6 5.2012 -6.7709 2.6292 17 6 5.0491 -5.8916 3.7308 18 7 5.9487 -6.1997 4.6250 19 7 6.7089 -7.2698 4.1571 20 6 6.2514 -7.6177 2.9341 21 8 6.7715 -8.6238 2.1915 22 6 8.0616 -9.0884 2.6158 23 6 8.0487 -9.2972 4.1340 24 6 7.8249 -7.9467 4.8288 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 0.9449 -4.9827 -0.8888 29 1 0.9453 -4.9822 0.8912 30 1 3.3212 -5.7956 -0.8418 31 1 2.1822 -6.9375 -0.0888 32 1 4.3158 -5.1032 3.8154 33 1 8.2900 -10.0321 2.1204 34 1 8.8187 -8.3483 2.3565 35 1 7.2425 -9.9807 4.4006 36 1 9.0029 -9.7172 4.4519 37 1 8.7261 -7.3388 4.7495 38 1 7.5801 -8.1075 5.8787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815251861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:06 Heat of formation + Delta-G solvation = -87.823687 kcal Electronic energy + Delta-G solvation = -23203.491572 eV Core-core repulsion = 19434.812234 eV Total energy + Delta-G solvation = -3768.679339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18718 -39.74902 -38.90147 -36.87856 -35.74766 -35.07962 -32.71368 -31.38127 -30.49649 -29.53833 -26.92740 -26.77351 -24.58639 -22.83920 -22.33948 -21.91002 -20.77691 -20.10741 -18.46846 -17.47255 -16.84203 -16.57363 -16.23711 -16.20536 -15.57155 -15.32764 -15.30210 -15.05283 -14.66393 -14.47755 -14.21800 -13.61295 -13.43651 -13.01340 -12.72681 -12.51848 -12.21850 -12.00528 -11.83591 -11.71431 -11.33620 -11.07827 -10.81865 -10.81305 -10.63476 -10.19546 -10.14222 -9.96881 -9.53375 -9.05208 -8.81296 -8.72501 -8.14714 -6.07191 -4.08272 1.23669 1.73245 1.98591 2.56193 3.04017 3.31588 3.32773 3.39118 3.46221 3.64616 3.83079 4.22190 4.27598 4.38082 4.60689 4.63927 4.79539 4.83182 4.91051 4.93596 5.12018 5.24888 5.29549 5.34770 5.40045 5.61024 5.70762 5.98798 6.05644 6.20372 6.30244 6.78536 6.85970 7.12572 7.30219 7.46483 7.84089 8.16554 8.19027 8.59907 9.05411 9.56446 11.04501 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.002941 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.621973 B = 9519.040549 C =10311.387976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.078 3.922 13 O -0.337 6.337 14 C 0.545 3.455 15 O -0.522 6.522 16 C -0.289 4.289 17 C 0.132 3.868 18 N -0.287 5.287 19 N -0.398 5.398 20 C 0.343 3.657 21 O -0.264 6.264 22 C 0.042 3.958 23 C -0.178 4.178 24 C 0.128 3.872 25 H 0.263 0.737 26 H 0.005 0.995 27 H 0.008 0.992 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.210 0.790 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.842 -20.808 9.687 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.004 3.996 13 O -0.253 6.253 14 C 0.390 3.610 15 O -0.412 6.412 16 C -0.301 4.301 17 C -0.057 4.057 18 N -0.108 5.108 19 N -0.192 5.192 20 C 0.169 3.831 21 O -0.168 6.168 22 C -0.033 4.033 23 C -0.216 4.216 24 C 0.008 3.992 25 H 0.073 0.927 26 H 0.023 0.977 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.227 0.773 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.464 -20.835 10.372 28.508 hybrid contribution -0.115 0.543 -0.760 0.941 sum 16.349 -20.292 9.612 27.775 Atomic orbital electron populations 1.69968 1.06094 1.27019 1.50804 1.24945 0.94971 0.99427 0.95208 0.86289 0.80082 0.82609 0.77570 1.19448 1.20904 1.20846 1.21105 0.94164 0.89305 1.50465 0.91427 1.20235 0.88772 0.83574 0.95480 1.87925 1.35229 1.12608 1.95214 1.22326 0.93309 0.85434 1.00486 1.23163 0.93503 0.98605 0.84332 1.86628 1.43369 1.53890 1.41432 1.19575 0.78269 0.78081 0.85045 1.90839 1.68708 1.38678 1.42998 1.18130 1.06270 1.05901 0.99837 1.24345 0.95771 0.97062 0.88561 1.77172 1.08250 1.02752 1.22618 1.49025 1.29166 1.28165 1.12830 1.19604 0.92277 0.87872 0.83322 1.86742 1.34113 1.45969 1.49983 1.23288 0.83021 1.02223 0.94760 1.22691 1.06093 0.97030 0.95820 1.22014 0.86864 0.92002 0.98367 0.92740 0.97676 0.97462 0.92055 0.93168 0.90597 0.90531 0.77319 0.85725 0.90401 0.89030 0.86759 0.88822 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -15.29 9.43 -34.44 -0.32 -15.62 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.36 5.69 36.01 0.20 5.57 16 10 O -0.39 -9.65 10.30 -38.80 -0.40 -10.04 16 11 C 0.06 1.17 6.33 37.16 0.24 1.41 16 12 C 0.08 1.32 5.86 37.16 0.22 1.54 16 13 O -0.34 -6.12 10.04 -43.63 -0.44 -6.56 16 14 C 0.54 9.58 7.94 34.17 0.27 9.86 16 15 O -0.52 -10.07 16.32 -21.77 -0.36 -10.42 16 16 C -0.29 -4.42 6.13 -105.08 -0.64 -5.06 16 17 C 0.13 1.80 11.88 -16.76 -0.20 1.60 16 18 N -0.29 -3.77 12.54 30.98 0.39 -3.38 16 19 N -0.40 -4.42 4.04 -60.45 -0.24 -4.66 16 20 C 0.34 4.53 7.50 -16.07 -0.12 4.41 16 21 O -0.26 -3.14 10.18 -20.38 -0.21 -3.35 16 22 C 0.04 0.25 7.01 37.29 0.26 0.51 16 23 C -0.18 -0.64 6.17 -26.33 -0.16 -0.80 16 24 C 0.13 0.73 7.40 -3.61 -0.03 0.71 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.21 2.50 8.06 -52.48 -0.42 2.08 16 33 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -37.36 336.24 -5.90 -43.26 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: -5.04 Total: -6.25 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -0.39 Total: 5.63 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.88 Total: -34.40 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.40 Total: -30.37 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.36 -5.90 -43.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815251861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.567 kcal (2) G-P(sol) polarization free energy of solvation -37.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds