Wall clock time and date at job start Tue Mar 31 2020 03:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99713 * 2 1 4 4 H 1.48500 * 109.47268 * 270.00112 * 3 2 1 5 5 H 1.48501 * 109.47340 * 30.00149 * 3 2 1 6 6 H 1.48509 * 109.47094 * 150.00263 * 3 2 1 7 7 C 1.37870 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00058 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47217 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99589 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46893 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47164 * 60.00204 * 12 11 10 14 14 O 1.42903 * 109.47171 * 299.99938 * 12 11 10 15 15 C 1.53003 * 109.47376 * 180.02562 * 12 11 10 16 16 O 1.42896 * 109.47132 * 185.00143 * 15 12 11 17 17 C 1.35907 * 116.99847 * 179.97438 * 16 15 12 18 18 C 1.38753 * 120.05437 * 359.97438 * 17 16 15 19 19 C 1.38128 * 119.94253 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.05755 * 0.02562 * 19 18 17 21 21 C 1.38253 * 120.10939 * 359.97438 * 20 19 18 22 22 C 1.38162 * 120.05378 * 359.74165 * 21 20 19 23 23 N 1.48008 * 120.02709 * 180.26090 * 22 21 20 24 24 O 1.21802 * 119.99455 * 0.26854 * 23 22 21 25 25 O 1.21801 * 119.99925 * 180.27542 * 23 22 21 26 26 H 0.97003 * 120.00278 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47162 * 59.99656 * 9 7 2 28 28 H 1.09003 * 109.46881 * 299.99941 * 9 7 2 29 29 H 1.00893 * 110.99943 * 303.95254 * 10 9 7 30 30 H 1.08999 * 109.47049 * 60.00398 * 11 10 9 31 31 H 1.08997 * 109.47646 * 300.00448 * 11 10 9 32 32 H 0.96700 * 114.00311 * 300.00378 * 14 12 11 33 33 H 1.09005 * 109.46682 * 304.99749 * 15 12 11 34 34 H 1.08999 * 109.47221 * 64.99915 * 15 12 11 35 35 H 1.08005 * 120.02913 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.97083 * 180.02562 * 19 18 17 37 37 H 1.07994 * 119.94614 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.96731 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0018 11 6 1.5055 -4.9069 -0.0012 12 6 2.5305 -6.0429 -0.0019 13 1 3.1560 -5.9684 0.8877 14 8 3.3489 -5.9454 -1.1693 15 6 1.8012 -7.3879 -0.0019 16 8 2.7540 -8.4464 0.1149 17 6 2.2677 -9.7154 0.1309 18 6 0.9013 -9.9371 0.0365 19 6 0.4095 -11.2278 0.0524 20 6 1.2777 -12.2985 0.1628 21 6 2.6397 -12.0801 0.2569 22 6 3.1369 -10.7913 0.2355 23 7 4.5955 -10.5585 0.3305 24 8 5.3582 -11.5036 0.4227 25 8 5.0330 -9.4218 0.3167 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8400 -3.5482 -0.7836 30 1 0.8797 -4.9813 -0.8905 31 1 0.8815 -4.9816 0.8894 32 1 2.8576 -6.0038 -2.0001 33 1 1.1102 -7.4265 0.8402 34 1 1.2458 -7.5001 -0.9331 35 1 0.2227 -9.1012 -0.0493 36 1 -0.6540 -11.4010 -0.0214 37 1 0.8913 -13.3068 0.1754 38 1 3.3156 -12.9180 0.3434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819269608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:25 Heat of formation + Delta-G solvation = -64.082794 kcal Electronic energy + Delta-G solvation = -23026.107815 eV Core-core repulsion = 19258.457959 eV Total energy + Delta-G solvation = -3767.649856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.23263 -40.65149 -38.61732 -37.29011 -36.40680 -34.68154 -32.55160 -32.40372 -31.19655 -30.09457 -27.23076 -26.58336 -24.83831 -22.89499 -22.73909 -21.47793 -21.37012 -19.68375 -18.64314 -18.30862 -17.58539 -16.99423 -16.77862 -16.48142 -15.83376 -15.71092 -15.28842 -15.09339 -14.76671 -14.17133 -13.94760 -13.49119 -13.19085 -12.91155 -12.70994 -12.36783 -12.22812 -11.62139 -11.51827 -11.45870 -11.41399 -11.11026 -11.05454 -10.85257 -10.78284 -10.66331 -10.21187 -10.10759 -9.85003 -9.21593 -9.09635 -8.53021 -7.41142 -6.08064 -4.09942 -0.33619 0.52894 1.16730 1.32421 2.41390 2.83730 3.30686 3.36671 3.42349 3.86843 4.00842 4.25799 4.34049 4.37879 4.40193 4.47399 4.55785 4.74913 4.89173 4.97661 5.19203 5.21976 5.28424 5.33408 5.37900 5.57719 5.63755 5.78442 5.93479 6.15441 6.28325 6.65255 7.12138 7.31627 7.66014 7.69183 7.73505 8.05132 8.31203 8.53212 8.99574 9.55564 11.03143 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.030374 B = 0.002560 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.610037 B =10934.951501 C =11723.684768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.683 5.683 11 C 0.034 3.966 12 C 0.115 3.885 13 H 0.120 0.880 14 O -0.542 6.542 15 C 0.019 3.981 16 O -0.266 6.266 17 C 0.201 3.799 18 C -0.217 4.217 19 C -0.026 4.026 20 C -0.163 4.163 21 C -0.021 4.021 22 C -0.085 4.085 23 N 0.033 4.967 24 O -0.189 6.189 25 O -0.123 6.123 26 H 0.262 0.738 27 H -0.014 1.014 28 H 0.028 0.972 29 H 0.339 0.661 30 H 0.023 0.977 31 H 0.075 0.925 32 H 0.368 0.632 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 -26.383 -1.190 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.315 5.315 11 C -0.097 4.097 12 C 0.055 3.945 13 H 0.138 0.862 14 O -0.346 6.346 15 C -0.057 4.057 16 O -0.175 6.175 17 C 0.151 3.849 18 C -0.236 4.236 19 C -0.045 4.045 20 C -0.182 4.182 21 C -0.040 4.040 22 C -0.170 4.170 23 N 0.551 4.449 24 O -0.396 6.396 25 O -0.346 6.346 26 H 0.071 0.929 27 H 0.004 0.996 28 H 0.046 0.954 29 H 0.157 0.843 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.214 0.786 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.170 0.830 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.498 -26.260 -0.079 26.379 hybrid contribution -0.522 0.871 -1.251 1.611 sum -3.020 -25.389 -1.330 25.603 Atomic orbital electron populations 1.69955 1.06131 1.26888 1.50966 1.24989 0.94897 0.99473 0.95222 0.86454 0.79850 0.82778 0.78099 1.20666 1.21231 1.19639 1.21186 0.93678 0.90098 1.50355 0.91763 1.19579 0.90528 0.87383 0.95701 1.60546 1.20888 1.00200 1.49903 1.22423 0.94917 0.91612 1.00725 1.22081 0.93258 0.88279 0.90898 0.86228 1.86731 1.36927 1.95747 1.15196 1.24016 0.92113 0.87148 1.02406 1.86523 1.35639 1.10753 1.84618 1.18811 0.91512 0.84978 0.89619 1.21436 0.92807 0.99757 1.09611 1.21434 1.01076 0.91473 0.90480 1.21107 0.91526 1.00488 1.05039 1.20969 0.96909 0.94207 0.91871 1.20583 0.80168 0.94486 1.21769 1.43350 1.02734 1.00830 0.97973 1.94506 1.54406 1.35582 1.55057 1.94676 1.80593 1.07682 1.51681 0.92881 0.99643 0.95440 0.84318 0.95940 0.90640 0.78617 0.90169 0.91020 0.83048 0.83758 0.83552 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.54 9.32 -34.44 -0.32 -14.86 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.19 4.98 5.44 -4.97 -0.03 4.96 16 10 N -0.68 -14.25 6.49 -115.06 -0.75 -15.00 16 11 C 0.03 0.53 5.39 -3.82 -0.02 0.51 16 12 C 0.11 1.53 3.52 -26.73 -0.09 1.44 16 13 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 14 O -0.54 -7.78 12.64 -40.11 -0.51 -8.29 16 15 C 0.02 0.19 4.37 37.16 0.16 0.35 16 16 O -0.27 -3.31 8.11 -45.45 -0.37 -3.68 16 17 C 0.20 2.12 6.67 -39.22 -0.26 1.86 16 18 C -0.22 -1.54 9.04 -39.43 -0.36 -1.89 16 19 C -0.03 -0.13 10.04 -39.60 -0.40 -0.53 16 20 C -0.16 -0.83 10.04 -39.56 -0.40 -1.23 16 21 C -0.02 -0.16 9.55 -39.60 -0.38 -0.54 16 22 C -0.09 -0.96 6.87 -79.81 -0.55 -1.51 16 23 N 0.03 0.48 4.45 34.03 0.15 0.63 16 24 O -0.19 -2.73 18.45 -29.46 -0.54 -3.28 16 25 O -0.12 -2.05 17.24 -36.49 -0.63 -2.68 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.34 6.98 8.11 -39.30 -0.32 6.66 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.37 3.89 9.05 45.56 0.41 4.30 16 33 H 0.08 0.65 7.66 -51.93 -0.40 0.26 16 34 H 0.07 0.56 7.66 -51.93 -0.40 0.17 16 35 H 0.15 0.79 6.30 -52.48 -0.33 0.46 16 36 H 0.14 0.28 8.06 -52.48 -0.42 -0.14 16 37 H 0.15 0.32 8.06 -52.49 -0.42 -0.11 16 38 H 0.16 0.98 7.61 -52.49 -0.40 0.58 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -34.51 336.59 -8.53 -43.04 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -3.94 Total: 3.35 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.74 Total: -9.96 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.14 Total: -40.22 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -2.05 Total: -17.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.51 -8.53 -43.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.041 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds