Wall clock time and date at job start Tue Mar 31 2020 03:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47168 * 2 1 4 4 C 1.50711 * 109.46902 * 119.99629 * 2 1 3 5 5 N 1.29999 * 127.34024 * 300.02390 * 4 2 1 6 6 O 1.20653 * 112.32165 * 179.97438 * 5 4 2 7 7 C 1.33465 * 113.17772 * 0.02562 * 6 5 4 8 8 C 1.37444 * 106.32678 * 359.97438 * 7 6 5 9 9 C 1.47257 * 128.57495 * 179.97438 * 8 7 6 10 10 O 1.21531 * 120.00026 * 180.02562 * 9 8 7 11 11 O 1.34757 * 119.99571 * 0.02562 * 9 8 7 12 12 C 1.45205 * 116.99774 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47319 * 179.97438 * 12 11 9 14 14 O 1.21282 * 119.99999 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00282 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00027 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47190 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00591 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99340 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47129 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.47104 * 120.00372 * 21 19 17 24 24 H 1.48501 * 109.46851 * 240.00204 * 21 19 17 25 25 H 1.09000 * 109.46987 * 300.00223 * 1 2 3 26 26 H 1.08999 * 109.46954 * 60.00386 * 1 2 3 27 27 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47251 * 239.99298 * 2 1 3 29 29 H 1.09005 * 109.47358 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46868 * 299.99666 * 3 2 1 31 31 H 1.09000 * 109.47348 * 59.99998 * 3 2 1 32 32 H 1.07994 * 126.83912 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47380 * 300.00324 * 12 11 9 34 34 H 1.09002 * 109.46843 * 60.00461 * 12 11 9 35 35 H 0.97000 * 119.99859 * 0.02562 * 15 13 12 36 36 H 1.08998 * 109.47437 * 299.99741 * 16 15 13 37 37 H 1.09002 * 109.47032 * 60.00315 * 16 15 13 38 38 H 0.97001 * 119.99916 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.8076 -0.3932 2.4711 6 8 2.3430 -1.1512 3.2422 7 6 3.0295 -2.1209 2.6341 8 6 2.8814 -1.9109 1.2839 9 6 3.4363 -2.6935 0.1667 10 8 3.2043 -2.3643 -0.9800 11 8 4.2013 -3.7745 0.4159 12 6 4.7139 -4.4984 -0.7338 13 6 5.5414 -5.6668 -0.2636 14 8 5.6847 -5.8698 0.9235 15 7 6.1224 -6.4862 -1.1622 16 6 6.9264 -7.6223 -0.7051 17 6 7.4585 -8.3735 -1.8982 18 1 7.2219 -8.0380 -2.8972 19 6 8.2484 -9.4886 -1.7147 20 7 8.5369 -9.8970 -0.4984 21 14 8.9086 -10.4193 -3.1937 22 1 8.4436 -9.7609 -4.4408 23 1 10.3930 -10.4175 -3.1573 24 1 8.4143 -11.8192 -3.1585 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.5898 -2.9129 3.1086 33 1 3.8808 -4.8615 -1.3356 34 1 5.3338 -3.8332 -1.3350 35 1 6.0081 -6.3236 -2.1117 36 1 7.7592 -7.2592 -0.1029 37 1 6.3064 -8.2877 -0.1042 38 1 9.0923 -10.6817 -0.3692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860228159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:41 Heat of formation + Delta-G solvation = -95.079615 kcal Electronic energy + Delta-G solvation = -22832.954185 eV Core-core repulsion = 19063.960206 eV Total energy + Delta-G solvation = -3768.993979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.09674 -41.65497 -40.33378 -37.84627 -37.12482 -36.17129 -34.41197 -33.92297 -32.79175 -30.83198 -28.64519 -28.13435 -26.31402 -24.72711 -24.54974 -22.37818 -21.65310 -21.08152 -19.62276 -19.00051 -18.85443 -18.36776 -17.79135 -17.75237 -17.09625 -16.91866 -16.16755 -16.08492 -15.83534 -15.47906 -14.76453 -14.54916 -14.54677 -14.28622 -14.07668 -13.75888 -13.67059 -13.16159 -12.93114 -12.89733 -12.75631 -12.39979 -12.34000 -12.21963 -12.21534 -11.96752 -11.60973 -11.45966 -11.14815 -10.91957 -10.91382 -10.82351 -9.91726 -8.29230 -6.45191 -0.22919 0.58616 0.98897 1.45419 1.45532 1.55489 1.59084 1.66688 2.00592 2.34658 2.55528 2.85986 3.06492 3.06937 3.60811 3.70083 3.84803 4.04347 4.06130 4.07670 4.09156 4.12998 4.52047 4.64266 4.70746 4.85431 4.87101 5.00936 5.07410 5.12126 5.23670 5.23794 5.33674 5.42944 5.63600 5.83321 6.42188 6.64257 6.78459 7.05484 7.21397 7.36404 8.82983 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.035720 B = 0.002456 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.688186 B =11399.220830 C =11986.548767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.138 4.138 4 C 0.081 3.919 5 N -0.366 5.366 6 O 0.098 5.902 7 C 0.063 3.937 8 C -0.280 4.280 9 C 0.554 3.446 10 O -0.512 6.512 11 O -0.338 6.338 12 C 0.063 3.937 13 C 0.501 3.499 14 O -0.581 6.581 15 N -0.698 5.698 16 C 0.266 3.734 17 C -0.555 4.555 18 H 0.086 0.914 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.983 3.017 22 H -0.253 1.253 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.267 0.733 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.413 0.587 36 H -0.006 1.006 37 H -0.006 1.006 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.081 19.883 -0.229 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.050 4.050 3 C -0.196 4.196 4 C -0.082 4.082 5 N -0.074 5.074 6 O 0.042 5.958 7 C -0.019 4.019 8 C -0.285 4.285 9 C 0.399 3.601 10 O -0.402 6.402 11 O -0.253 6.253 12 C -0.014 4.014 13 C 0.286 3.714 14 O -0.462 6.462 15 N -0.350 5.350 16 C 0.144 3.856 17 C -0.593 4.593 18 H 0.104 0.896 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.807 3.193 22 H -0.176 1.176 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.283 0.717 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.249 0.751 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.605 20.626 1.007 25.294 hybrid contribution 1.020 -1.438 -1.206 2.136 sum -13.586 19.189 -0.200 23.512 Atomic orbital electron populations 1.21800 0.92126 1.02224 1.03459 1.19946 0.97355 0.96394 0.91348 1.21799 1.00942 0.93410 1.03459 1.25124 0.95589 0.92895 0.94608 1.73663 1.17706 1.14507 1.01543 1.84610 1.48009 1.29520 1.33637 1.27355 0.91236 0.92063 0.91199 1.21271 1.11600 1.02212 0.93452 1.19598 0.75159 0.77972 0.87401 1.90825 1.57888 1.68725 1.22799 1.86560 1.61479 1.39024 1.38236 1.22809 0.99854 0.92188 0.86506 1.20618 0.80424 0.83977 0.86346 1.90684 1.62898 1.74234 1.18365 1.46033 1.50383 1.28409 1.10164 1.18633 0.88757 0.82833 0.95394 1.21642 1.32337 1.12013 0.93268 0.89613 1.26026 0.96012 0.98081 0.99410 1.70131 1.37829 1.25690 1.23180 0.85130 0.77733 0.77882 0.78600 1.17638 1.20600 1.20588 0.92240 0.89530 0.93069 0.88076 0.93071 0.89530 0.92241 0.71704 0.85435 0.85449 0.75086 0.98842 0.98846 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.18 71.98 0.66 -1.40 16 2 C -0.03 -0.56 3.33 -11.54 -0.04 -0.60 16 3 C -0.14 -2.06 9.17 71.98 0.66 -1.40 16 4 C 0.08 1.72 6.09 45.17 0.28 1.99 16 5 N -0.37 -7.76 12.01 -44.74 -0.54 -8.29 16 6 O 0.10 1.79 11.06 77.24 0.85 2.64 16 7 C 0.06 1.03 12.24 67.63 0.83 1.86 16 8 C -0.28 -6.07 6.47 -18.75 -0.12 -6.19 16 9 C 0.55 13.91 7.95 70.19 0.56 14.47 16 10 O -0.51 -13.92 15.05 19.74 0.30 -13.62 16 11 O -0.34 -9.30 9.66 -50.29 -0.49 -9.79 16 12 C 0.06 1.64 5.95 71.23 0.42 2.06 16 13 C 0.50 18.67 7.91 87.66 0.69 19.37 16 14 O -0.58 -27.32 16.50 15.76 0.26 -27.06 16 15 N -0.70 -27.29 5.55 -466.79 -2.59 -29.88 16 16 C 0.27 13.88 5.43 85.63 0.46 14.35 16 17 C -0.55 -28.89 9.28 25.60 0.24 -28.66 16 18 H 0.09 4.01 7.60 -2.91 -0.02 3.99 16 19 C 0.00 0.24 5.46 84.65 0.46 0.70 16 20 N -0.93 -54.53 13.29 21.45 0.28 -54.25 16 21 Si 0.98 41.12 29.54 68.60 2.03 43.15 16 22 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 23 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.10 2.04 6.29 -2.39 -0.02 2.03 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.27 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.13 2.68 8.14 -2.39 -0.02 2.67 16 34 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.41 12.85 8.32 -92.71 -0.77 12.08 16 36 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -72.49 342.42 5.54 -66.96 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.32 Total: 13.58 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.10 Total: 16.56 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -2.84 Total: -92.42 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: 0.93 Total: -47.82 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -72.49 5.54 -66.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860228159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.125 kcal (2) G-P(sol) polarization free energy of solvation -72.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds