Wall clock time and date at job start Tue Mar 31 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46933 * 2 1 4 4 C 1.46504 * 119.99658 * 270.00115 * 3 2 1 5 5 C 1.50704 * 109.47122 * 269.99766 * 4 3 2 6 6 H 1.08001 * 119.99512 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00160 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00230 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99916 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47271 * 90.00118 * 9 7 5 11 11 H 1.48504 * 109.46955 * 210.00016 * 9 7 5 12 12 H 1.48496 * 109.46809 * 329.99739 * 9 7 5 13 13 C 1.34767 * 120.00041 * 89.99907 * 3 2 1 14 14 O 1.21284 * 120.00333 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00222 * 0.02562 * 13 3 2 16 16 O 1.45194 * 109.47237 * 179.97438 * 15 13 3 17 17 C 1.34767 * 117.00042 * 179.97438 * 16 15 13 18 18 O 1.21529 * 120.00011 * 0.02562 * 17 16 15 19 19 C 1.47255 * 120.00103 * 180.02562 * 17 16 15 20 20 C 1.37443 * 128.57358 * 0.02562 * 19 17 16 21 21 O 1.33464 * 106.32483 * 180.24766 * 20 19 17 22 22 N 1.20651 * 113.17891 * 359.51399 * 21 20 19 23 23 C 1.30007 * 112.32088 * 0.50960 * 22 21 20 24 24 C 1.50694 * 127.33977 * 179.72256 * 23 22 21 25 25 H 1.08997 * 109.47399 * 60.00432 * 1 2 3 26 26 H 1.09004 * 109.46368 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47380 * 299.99433 * 1 2 3 28 28 H 1.09007 * 109.47524 * 240.00228 * 2 1 3 29 29 H 1.08997 * 109.47399 * 119.99568 * 2 1 3 30 30 H 1.08995 * 109.47453 * 29.99847 * 4 3 2 31 31 H 1.09001 * 109.46694 * 150.00033 * 4 3 2 32 32 H 0.97000 * 119.99789 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47141 * 59.99571 * 15 13 3 34 34 H 1.08999 * 109.47263 * 300.00284 * 15 13 3 35 35 H 1.08002 * 126.83347 * 359.97438 * 20 19 17 36 36 H 1.09000 * 109.46951 * 269.97545 * 24 23 22 37 37 H 1.09006 * 109.47166 * 29.97356 * 24 23 22 38 38 H 1.08998 * 109.47262 * 149.97041 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7039 6 1 4.3426 1.2304 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 5.3916 2.1843 -3.2569 9 14 3.0133 3.4371 -3.9281 10 1 3.1170 4.8570 -3.5060 11 1 3.4063 3.3149 -5.3550 12 1 1.6135 2.9712 -3.7587 13 6 2.2429 2.0166 1.1671 14 8 2.6475 3.1599 1.1672 15 6 1.9923 1.3060 2.4723 16 8 2.3072 2.1955 3.5758 17 6 2.1355 1.7099 4.8212 18 8 1.7340 0.5739 4.9805 19 6 2.4344 2.5556 5.9890 20 6 2.8919 3.8515 6.0140 21 8 3.0145 4.1812 7.3015 22 7 2.6944 3.2923 8.0519 23 6 2.3167 2.2224 7.4173 24 6 1.8560 0.9189 8.0168 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0954 3.1411 -1.1384 32 1 5.7175 2.5748 -4.0829 33 1 2.6228 0.4188 2.5298 34 1 0.9445 1.0114 2.5302 35 1 3.1128 4.4767 5.1615 36 1 2.7138 0.2621 8.1614 37 1 1.3784 1.1096 8.9780 38 1 1.1424 0.4420 7.3449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860430120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:56 Heat of formation + Delta-G solvation = -51.705446 kcal Electronic energy + Delta-G solvation = -23495.510034 eV Core-core repulsion = 19728.396900 eV Total energy + Delta-G solvation = -3767.113134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.25859 -40.54975 -39.10844 -36.57706 -35.49392 -34.82464 -32.83143 -32.53929 -30.52463 -29.54966 -28.99847 -27.20465 -25.19295 -23.11229 -22.44047 -21.56897 -21.24692 -18.91450 -18.36390 -18.06680 -17.40330 -17.07417 -16.74355 -16.58450 -16.07541 -15.49895 -14.76012 -14.63977 -14.05348 -13.69686 -13.62700 -13.55700 -13.44709 -12.98503 -12.84820 -12.65020 -12.46413 -12.28107 -11.90692 -11.68597 -11.52863 -11.09155 -10.98976 -10.90134 -10.68984 -10.56755 -10.30681 -10.22344 -10.10705 -9.61466 -9.20835 -8.64509 -7.89716 -6.14153 -4.13966 0.62527 1.40801 2.05428 2.62440 2.82953 3.07603 3.25169 3.30969 3.32997 3.60267 3.75389 3.94817 4.34337 4.52022 4.67449 4.71646 5.01637 5.07156 5.08792 5.18934 5.22623 5.23307 5.27795 5.38787 5.43652 5.60026 5.77045 5.87547 6.04987 6.12637 6.29982 6.59513 6.83614 7.16929 7.47176 7.53234 7.84337 8.03143 8.38768 8.72885 8.88936 9.45147 10.99062 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.022847 B = 0.003335 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.247116 B = 8392.581634 C = 9138.943593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.586 5.586 4 C 0.218 3.782 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.519 6.519 15 C 0.053 3.947 16 O -0.325 6.325 17 C 0.548 3.452 18 O -0.500 6.500 19 C -0.252 4.252 20 C 0.039 3.961 21 O 0.096 5.904 22 N -0.359 5.359 23 C 0.077 3.923 24 C -0.079 4.079 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.240 0.760 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -2.765 17.112 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.320 5.320 4 C 0.098 3.902 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.394 6.394 15 C -0.024 4.024 16 O -0.240 6.240 17 C 0.391 3.609 18 O -0.389 6.389 19 C -0.257 4.257 20 C -0.043 4.043 21 O 0.039 5.961 22 N -0.068 5.068 23 C -0.086 4.086 24 C -0.137 4.137 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.256 0.744 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.468 -2.085 18.225 20.643 hybrid contribution -0.541 -0.046 -1.596 1.686 sum -10.009 -2.131 16.628 19.525 Atomic orbital electron populations 1.22246 0.96426 1.01950 1.02339 1.21562 0.93691 0.83498 1.03587 1.47873 1.64075 1.13574 1.06437 1.19712 0.97565 0.93427 0.79458 1.21308 0.95252 1.33213 1.07336 0.90670 1.24851 0.95008 0.95746 0.97315 1.69895 1.15105 1.44814 1.23555 0.86852 0.81402 0.81630 0.79819 1.19833 1.21015 1.19043 1.19672 0.79483 0.87116 0.84262 1.90714 1.44370 1.17586 1.86744 1.22988 1.03043 0.92584 0.83756 1.86577 1.78779 1.44814 1.13786 1.19467 0.74446 0.84700 0.82243 1.90844 1.42696 1.18697 1.86644 1.21257 1.15952 0.95991 0.92548 1.26882 0.93342 0.95523 0.88527 1.84600 1.62607 1.35062 1.13808 1.73725 1.17683 0.98230 1.17168 1.24859 0.98681 0.96926 0.88117 1.20316 1.02640 0.89462 1.01253 0.91949 0.91624 0.93020 0.89099 0.91323 0.94836 0.94387 0.92468 0.88145 0.88358 0.74376 0.89452 0.90097 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.10 1.45 5.93 -4.04 -0.02 1.42 16 3 N -0.59 -11.37 2.46 -175.05 -0.43 -11.79 16 4 C 0.22 5.10 4.23 -5.19 -0.02 5.08 16 5 C -0.53 -14.84 9.94 -34.44 -0.34 -15.18 16 6 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 9 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 13 C 0.51 9.95 7.75 -10.99 -0.09 9.87 16 14 O -0.52 -12.32 16.08 -14.11 -0.23 -12.54 16 15 C 0.05 0.79 4.51 36.01 0.16 0.95 16 16 O -0.32 -4.91 9.66 -47.36 -0.46 -5.36 16 17 C 0.55 7.42 7.95 34.39 0.27 7.70 16 18 O -0.50 -7.24 15.49 -19.29 -0.30 -7.53 16 19 C -0.25 -2.93 6.47 -102.91 -0.67 -3.60 16 20 C 0.04 0.37 12.24 30.44 0.37 0.74 16 21 O 0.10 0.97 11.06 18.73 0.21 1.18 16 22 N -0.36 -4.12 12.01 34.79 0.42 -3.70 16 23 C 0.08 0.85 7.58 -79.76 -0.60 0.25 16 24 C -0.08 -0.68 10.14 36.00 0.37 -0.31 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.57 7.22 -51.93 -0.38 0.19 16 28 H 0.09 1.37 8.07 -51.92 -0.42 0.95 16 29 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 30 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 31 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.10 1.35 7.40 -51.93 -0.38 0.96 16 34 H 0.10 1.22 7.18 -51.93 -0.37 0.84 16 35 H 0.24 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.86 7.11 -51.93 -0.37 0.49 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -34.90 335.79 -4.60 -39.49 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.68 Total: -2.07 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -0.29 Total: 7.29 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.76 Total: -41.81 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.78 Total: -24.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.90 -4.60 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860430120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.211 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds