Wall clock time and date at job start Tue Mar 31 2020 03:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46815 * 2 1 4 4 C 1.34236 * 117.00156 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99512 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46984 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47398 * 54.99888 * 7 6 4 9 9 C 1.50699 * 109.47083 * 174.99834 * 7 6 4 10 10 H 1.07996 * 120.00370 * 239.99526 * 9 7 6 11 11 C 1.37882 * 119.99790 * 59.99908 * 9 7 6 12 12 N 1.31508 * 120.00257 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99910 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47104 * 89.99584 * 13 11 9 15 15 H 1.48500 * 109.47256 * 209.99881 * 13 11 9 16 16 H 1.48506 * 109.46930 * 329.99722 * 13 11 9 17 17 O 1.45198 * 109.46884 * 294.99550 * 7 6 4 18 18 C 1.34760 * 116.99895 * 150.00001 * 17 7 6 19 19 O 1.21518 * 119.99722 * 0.02562 * 18 17 7 20 20 C 1.47286 * 119.99995 * 180.02562 * 18 17 7 21 21 C 1.41345 * 126.42480 * 359.68585 * 20 18 17 22 22 N 1.30438 * 108.00994 * 179.85435 * 21 20 18 23 23 N 1.39930 * 108.91690 * 0.41117 * 22 21 20 24 24 C 1.46502 * 125.74060 * 179.72892 * 23 22 21 25 25 C 1.34221 * 108.51708 * 359.73883 * 23 22 21 26 26 H 1.08997 * 109.47324 * 299.99705 * 1 2 3 27 27 H 1.09001 * 109.47347 * 60.00369 * 1 2 3 28 28 H 1.09002 * 109.46807 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47324 * 240.00295 * 2 1 3 30 30 H 1.09001 * 109.47347 * 119.99631 * 2 1 3 31 31 H 1.08990 * 109.47311 * 60.00248 * 6 4 3 32 32 H 1.09001 * 109.47069 * 300.00013 * 6 4 3 33 33 H 0.97002 * 120.00075 * 180.02562 * 12 11 9 34 34 H 1.08001 * 125.99593 * 0.02562 * 21 20 18 35 35 H 1.08998 * 109.47293 * 270.00220 * 24 23 22 36 36 H 1.09004 * 109.46730 * 30.00668 * 24 23 22 37 37 H 1.09003 * 109.46619 * 149.99949 * 24 23 22 38 38 H 1.07997 * 126.29884 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8575 0.0010 8 1 5.7805 2.2502 -0.8411 9 6 6.0242 4.2448 -0.1222 10 1 6.6589 4.4936 -0.9598 11 6 5.7405 5.1964 0.8344 12 7 4.9672 4.8936 1.8541 13 14 6.4535 6.9162 0.6813 14 1 5.5184 7.7727 -0.0914 15 1 6.6492 7.4933 2.0355 16 1 7.7598 6.8496 -0.0220 17 8 5.9016 2.2540 1.2415 18 6 7.0507 1.5515 1.1961 19 8 7.6577 1.4467 0.1486 20 6 7.5709 0.9109 2.4160 21 6 6.9826 0.9499 3.7006 22 7 7.7386 0.2626 4.5115 23 7 8.8352 -0.2338 3.7980 24 6 9.9179 -1.0506 4.3521 25 6 8.7284 0.1643 2.5207 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5844 3.4694 0.8911 32 1 3.5849 3.4699 -0.8888 33 1 4.7673 5.5632 2.5269 34 1 6.0663 1.4573 3.9640 35 1 10.7162 -0.4008 4.7107 36 1 9.5355 -1.6474 5.1801 37 1 10.3075 -1.7112 3.5775 38 1 9.4198 -0.0585 1.7215 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870619979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:07 Heat of formation + Delta-G solvation = -118.413109 kcal Electronic energy + Delta-G solvation = -24133.469745 eV Core-core repulsion = 20363.463949 eV Total energy + Delta-G solvation = -3770.005795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31879 -41.43802 -40.33856 -37.77782 -36.95746 -35.00551 -34.33662 -32.88031 -32.01890 -31.32969 -28.33099 -27.93039 -25.06411 -24.16476 -23.14007 -22.04627 -21.52210 -21.10957 -19.07768 -18.85696 -18.22223 -17.65930 -17.30054 -17.13870 -16.70478 -16.45282 -16.26801 -15.84013 -15.37281 -15.22962 -14.55141 -14.26701 -14.06627 -13.70815 -13.66981 -13.53982 -13.44718 -13.31478 -12.94416 -12.80898 -12.74850 -12.57663 -12.44345 -12.14080 -12.07655 -11.51224 -11.45077 -11.35611 -11.09037 -10.71730 -10.64713 -10.57917 -9.75688 -8.19066 -6.44334 0.46812 1.08928 1.32344 1.41203 1.45083 1.46170 1.55722 1.84212 2.38933 2.39532 2.49179 3.14169 3.61382 3.81557 3.96336 4.02388 4.14464 4.16527 4.24068 4.36703 4.43992 4.51116 4.57793 4.63974 4.66581 4.70264 4.90450 4.94934 5.14815 5.16125 5.35279 5.37657 5.53103 5.69111 5.86186 5.99901 6.17330 6.45085 6.62928 6.89348 7.27918 7.41571 8.83154 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.009086 B = 0.006479 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.789265 B = 4320.329891 C = 6632.675489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.363 6.363 4 C 0.464 3.536 5 O -0.542 6.542 6 C -0.094 4.094 7 C 0.231 3.769 8 H 0.018 0.982 9 C -0.574 4.574 10 H 0.054 0.946 11 C 0.049 3.951 12 N -0.873 5.873 13 Si 0.957 3.043 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.280 1.280 17 O -0.337 6.337 18 C 0.532 3.468 19 O -0.574 6.574 20 C -0.304 4.304 21 C 0.099 3.901 22 N -0.319 5.319 23 N -0.356 5.356 24 C 0.086 3.914 25 C 0.140 3.860 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.272 0.728 34 H 0.192 0.808 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -9.938 3.788 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.281 6.281 4 C 0.310 3.690 5 O -0.433 6.433 6 C -0.131 4.131 7 C 0.178 3.822 8 H 0.036 0.964 9 C -0.610 4.610 10 H 0.072 0.928 11 C -0.156 4.156 12 N -0.508 5.508 13 Si 0.781 3.219 14 H -0.185 1.185 15 H -0.203 1.203 16 H -0.205 1.205 17 O -0.251 6.251 18 C 0.379 3.621 19 O -0.469 6.469 20 C -0.317 4.317 21 C -0.087 4.087 22 N -0.140 5.140 23 N -0.135 5.135 24 C -0.052 4.052 25 C -0.013 4.013 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.082 0.918 34 H 0.209 0.791 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.359 -10.713 4.951 11.807 hybrid contribution 0.323 1.091 -1.116 1.594 sum 0.682 -9.622 3.835 10.380 Atomic orbital electron populations 1.21804 0.89802 1.04421 1.03764 1.23283 0.97514 0.79737 1.02024 1.86547 1.24053 1.33478 1.84006 1.24556 0.80393 0.93445 0.70625 1.90588 1.61163 1.44299 1.47205 1.21660 0.94957 0.89080 1.07414 1.19949 0.89687 0.91584 0.80966 0.96361 1.21439 1.33383 0.95474 1.10752 0.92770 1.25678 0.93974 1.02108 0.93886 1.69936 1.34435 1.35483 1.10973 0.85592 0.78928 0.79559 0.77787 1.18522 1.20288 1.20524 1.86619 1.37150 1.60061 1.41271 1.20358 0.79651 0.74848 0.87224 1.90633 1.60170 1.62472 1.33668 1.19748 1.02683 1.15351 0.93932 1.24191 0.99190 0.95450 0.89918 1.77094 0.98436 1.17993 1.20469 1.48817 1.19459 1.39350 1.05830 1.22479 0.85708 0.94658 1.02344 1.23233 0.96206 0.92952 0.88924 0.91360 0.91048 0.87860 0.91674 0.92155 0.85251 0.86286 0.91826 0.79095 0.88524 0.87898 0.85950 0.76673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 10.29 71.98 0.74 -2.05 16 2 C 0.05 1.40 6.19 71.98 0.45 1.84 16 3 O -0.36 -13.54 10.22 -51.47 -0.53 -14.06 16 4 C 0.46 20.65 7.84 71.24 0.56 21.21 16 5 O -0.54 -26.91 15.17 26.93 0.41 -26.50 16 6 C -0.09 -4.41 5.23 29.85 0.16 -4.25 16 7 C 0.23 12.57 1.65 29.85 0.05 12.61 16 8 H 0.02 1.06 6.97 -2.39 -0.02 1.05 16 9 C -0.57 -32.19 8.92 25.60 0.23 -31.96 16 10 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 11 C 0.05 2.61 5.25 84.66 0.44 3.05 16 12 N -0.87 -46.37 10.93 21.45 0.23 -46.14 16 13 Si 0.96 41.97 29.54 68.60 2.03 44.00 16 14 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 15 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 O -0.34 -18.41 8.37 -51.71 -0.43 -18.85 16 18 C 0.53 27.63 7.92 70.20 0.56 28.19 16 19 O -0.57 -31.96 16.16 19.78 0.32 -31.64 16 20 C -0.30 -12.76 6.13 -20.16 -0.12 -12.88 16 21 C 0.10 3.84 11.87 85.66 1.02 4.86 16 22 N -0.32 -10.83 12.50 -56.24 -0.70 -11.53 16 23 N -0.36 -9.63 3.98 -367.73 -1.46 -11.09 16 24 C 0.09 1.16 11.44 127.77 1.46 2.62 16 25 C 0.14 4.40 11.30 84.30 0.95 5.36 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 30 H 0.06 1.80 8.13 -2.39 -0.02 1.79 16 31 H 0.13 6.42 6.22 -2.39 -0.01 6.41 16 32 H 0.12 5.07 8.14 -2.39 -0.02 5.05 16 33 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 34 H 0.19 7.32 8.06 -2.91 -0.02 7.30 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.22 5.32 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -75.98 340.89 7.42 -68.56 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 1.07 Total: 18.66 kcal Atomic # 6 Polarization: 22.11 SS G_CDS: 6.49 Total: 28.60 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -1.93 Total: -68.76 kcal Atomic # 8 Polarization: -90.82 SS G_CDS: -0.23 Total: -91.05 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -75.98 7.42 -68.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870619979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.853 kcal (2) G-P(sol) polarization free energy of solvation -75.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds