Wall clock time and date at job start Tue Mar 31 2020 03:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45205 * 109.46809 * 2 1 4 4 C 1.34224 * 116.99899 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00339 * 0.02562 * 4 3 2 6 6 C 1.50710 * 120.00057 * 179.97438 * 4 3 2 7 7 O 1.45200 * 109.46958 * 180.02562 * 6 4 3 8 8 C 1.34756 * 116.99417 * 180.02562 * 7 6 4 9 9 O 1.21520 * 120.00292 * 359.97438 * 8 7 6 10 10 C 1.47291 * 119.99648 * 180.02562 * 8 7 6 11 11 C 1.41344 * 126.42578 * 0.03822 * 10 8 7 12 12 N 1.30427 * 108.01038 * 179.68626 * 11 10 8 13 13 N 1.39939 * 108.92113 * 0.44175 * 12 11 10 14 14 C 1.46491 * 125.74450 * 179.81281 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.69080 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34222 * 108.50592 * 359.54733 * 13 12 11 24 24 C 1.50707 * 126.29232 * 180.23890 * 23 13 12 25 25 H 1.09004 * 109.47145 * 299.99750 * 1 2 3 26 26 H 1.08994 * 109.47039 * 60.00383 * 1 2 3 27 27 H 1.09005 * 109.46555 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47586 * 240.00277 * 2 1 3 29 29 H 1.09005 * 109.47493 * 119.99614 * 2 1 3 30 30 H 1.08996 * 109.46360 * 60.00147 * 6 4 3 31 31 H 1.08996 * 109.46775 * 300.00314 * 6 4 3 32 32 H 1.08000 * 125.99491 * 359.96182 * 11 10 8 33 33 H 1.09004 * 109.47166 * 149.69346 * 14 13 12 34 34 H 1.08994 * 109.47507 * 29.69052 * 14 13 12 35 35 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.46792 * 89.99868 * 24 23 13 37 37 H 1.08995 * 109.47272 * 209.99987 * 24 23 13 38 38 H 1.08999 * 109.47175 * 330.00300 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9206 2.9376 0.0000 7 8 5.3706 2.8616 0.0001 8 6 6.0443 4.0287 0.0002 9 8 5.4367 5.0811 -0.0003 10 6 7.5172 4.0288 -0.0002 11 6 8.3565 2.8915 -0.0015 12 7 9.5940 3.3036 -0.0083 13 7 9.6063 4.7029 -0.0014 14 6 10.8028 5.5482 -0.0019 15 6 11.2141 5.8372 1.4188 16 1 10.6418 5.4315 2.2399 17 6 12.3248 6.6145 1.6704 18 7 12.6870 6.8623 2.9102 19 14 13.3151 7.3158 0.2502 20 1 12.7739 8.6480 -0.1205 21 1 14.7361 7.4550 0.6587 22 1 13.2228 6.4019 -0.9166 23 6 8.3373 5.1402 -0.0002 24 6 7.8896 6.5792 0.0014 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.5842 3.4702 0.8895 31 1 3.5850 3.4692 -0.8904 32 1 8.0304 1.8620 -0.0018 33 1 10.5856 6.4850 -0.5150 34 1 11.6127 5.0313 -0.5166 35 1 13.4681 7.4094 3.0871 36 1 7.7811 6.9271 -1.0259 37 1 6.9323 6.6613 0.5159 38 1 8.6318 7.1900 0.5153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892667705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:21 Heat of formation + Delta-G solvation = -119.230718 kcal Electronic energy + Delta-G solvation = -22943.705306 eV Core-core repulsion = 19173.664057 eV Total energy + Delta-G solvation = -3770.041250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.50916 -41.74024 -40.84887 -37.98153 -37.24638 -35.80205 -34.05018 -33.02160 -32.79774 -30.66799 -29.51018 -28.29574 -25.24626 -24.39356 -23.71561 -22.33393 -21.77080 -20.56372 -19.28780 -19.19938 -18.38764 -18.18609 -18.12125 -17.18303 -17.14573 -16.55028 -16.27239 -15.89040 -15.32733 -15.16068 -14.75138 -14.49878 -14.27951 -14.06582 -13.83232 -13.77075 -13.68345 -13.56682 -13.19222 -13.07208 -12.94475 -12.56622 -12.51660 -12.17537 -11.94012 -11.89915 -11.84883 -11.64256 -11.56327 -11.38221 -10.91159 -10.34363 -9.70648 -8.42554 -6.55332 0.35770 0.79850 0.97479 1.12394 1.35619 1.36739 1.46689 1.59057 2.15320 2.18060 2.25590 2.89764 3.49207 3.62586 3.68227 3.89230 3.97908 4.04708 4.05621 4.06720 4.14204 4.35626 4.47234 4.49431 4.66543 4.70931 4.80469 4.92830 4.94307 5.08457 5.11706 5.16690 5.24032 5.37538 5.51548 5.77343 6.16540 6.48076 6.53929 6.63843 6.77424 7.08643 8.73699 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.042427 B = 0.002633 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.804900 B =10632.364914 C =10851.644687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.351 6.351 4 C 0.472 3.528 5 O -0.521 6.521 6 C 0.073 3.927 7 O -0.344 6.344 8 C 0.567 3.433 9 O -0.528 6.528 10 C -0.322 4.322 11 C 0.097 3.903 12 N -0.333 5.333 13 N -0.333 5.333 14 C 0.232 3.768 15 C -0.555 4.555 16 H 0.027 0.973 17 C 0.023 3.977 18 N -0.934 5.934 19 Si 0.950 3.050 20 H -0.249 1.249 21 H -0.280 1.280 22 H -0.242 1.242 23 C 0.170 3.830 24 C -0.099 4.099 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.217 0.783 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.274 0.726 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.349 -7.186 -9.851 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.268 6.268 4 C 0.315 3.685 5 O -0.409 6.409 6 C -0.001 4.001 7 O -0.261 6.261 8 C 0.414 3.586 9 O -0.419 6.419 10 C -0.335 4.335 11 C -0.090 4.090 12 N -0.151 5.151 13 N -0.109 5.109 14 C 0.113 3.887 15 C -0.593 4.593 16 H 0.045 0.955 17 C -0.177 4.177 18 N -0.572 5.572 19 Si 0.770 3.230 20 H -0.173 1.173 21 H -0.205 1.205 22 H -0.165 1.165 23 C 0.033 3.967 24 C -0.156 4.156 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.233 0.767 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.839 -7.417 -9.739 24.169 hybrid contribution 0.000 0.151 0.268 0.307 sum -20.839 -7.267 -9.472 24.016 Atomic orbital electron populations 1.21844 0.90067 1.04519 1.03929 1.23402 0.97165 0.78426 1.02970 1.86457 1.22194 1.34483 1.83714 1.23128 0.81443 0.91536 0.72419 1.90722 1.61124 1.43749 1.45341 1.22306 0.77558 0.91502 1.08723 1.86515 1.20338 1.34185 1.85059 1.19619 0.86646 0.80734 0.71613 1.90777 1.69804 1.32386 1.48940 1.18964 0.90423 0.93231 1.30887 1.24503 0.88629 1.00640 0.95238 1.77186 1.22351 0.89795 1.25812 1.48864 1.06294 1.04697 1.51013 1.20004 0.81388 0.89769 0.97586 1.21175 1.13531 1.33736 0.90883 0.95485 1.25829 0.97447 0.95383 0.99065 1.70024 1.26936 1.38587 1.21637 0.85695 0.77968 0.80318 0.78979 1.17317 1.20530 1.16546 1.22011 0.84237 0.98037 0.92402 1.20788 1.03299 0.86288 1.05266 0.91136 0.91009 0.88093 0.90918 0.91107 0.84851 0.84422 0.76662 0.90340 0.92370 0.91632 0.87177 0.87935 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 71.98 0.74 -0.34 16 2 C 0.05 0.72 6.19 71.98 0.45 1.16 16 3 O -0.35 -6.08 10.22 -51.36 -0.52 -6.61 16 4 C 0.47 10.15 8.04 71.24 0.57 10.72 16 5 O -0.52 -14.97 16.25 28.32 0.46 -14.51 16 6 C 0.07 1.43 6.07 71.24 0.43 1.86 16 7 O -0.34 -9.48 9.60 -50.27 -0.48 -9.97 16 8 C 0.57 17.63 7.95 70.20 0.56 18.19 16 9 O -0.53 -16.67 14.63 19.77 0.29 -16.39 16 10 C -0.32 -11.47 6.13 -20.16 -0.12 -11.60 16 11 C 0.10 3.51 11.87 85.67 1.02 4.52 16 12 N -0.33 -14.31 12.50 -56.25 -0.70 -15.01 16 13 N -0.33 -14.44 3.56 -336.67 -1.20 -15.64 16 14 C 0.23 10.42 4.85 85.64 0.42 10.83 16 15 C -0.56 -30.67 9.94 25.60 0.25 -30.42 16 16 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 17 C 0.02 1.26 5.47 84.66 0.46 1.73 16 18 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 19 Si 0.95 39.33 27.47 68.60 1.88 41.21 16 20 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 23 C 0.17 6.45 7.01 42.17 0.30 6.75 16 24 C -0.10 -3.08 9.34 71.24 0.67 -2.41 16 25 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 28 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.07 0.98 8.13 -2.38 -0.02 0.96 16 30 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.22 6.23 8.06 -2.91 -0.02 6.21 16 33 H 0.08 3.06 7.05 -2.38 -0.02 3.04 16 34 H 0.06 2.59 7.19 -2.39 -0.02 2.58 16 35 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.10 3.11 6.51 -2.39 -0.02 3.09 16 38 H 0.08 2.61 7.70 -2.39 -0.02 2.59 16 Total: -1.00 -72.56 340.06 6.78 -65.78 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.02 Total: 15.45 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.74 Total: 10.99 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.60 Total: -85.95 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -0.26 Total: -47.47 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.88 Total: 41.21 kcal Total: -72.56 6.78 -65.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892667705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.455 kcal (2) G-P(sol) polarization free energy of solvation -72.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds