Wall clock time and date at job start Tue Mar 31 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30642 * 128.64874 * 2 1 4 4 O 1.20831 * 109.62352 * 180.29814 * 3 2 1 5 5 N 1.20904 * 115.91047 * 359.70010 * 4 3 2 6 6 C 1.31611 * 109.17404 * 359.97438 * 5 4 3 7 7 C 1.48272 * 128.70849 * 179.97438 * 6 5 4 8 8 O 1.21504 * 119.99952 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00394 * 0.02902 * 7 6 5 10 10 C 1.46495 * 120.00183 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.64128 * 303.31902 * 11 10 9 13 13 C 1.54325 * 110.71718 * 66.45279 * 11 10 9 14 14 N 1.47018 * 107.27099 * 140.73458 * 13 11 10 15 15 C 1.36941 * 125.65333 * 181.01921 * 14 13 11 16 16 H 1.08003 * 119.99654 * 10.75826 * 15 14 13 17 17 C 1.38811 * 120.00604 * 190.74952 * 15 14 13 18 18 N 1.31621 * 119.99472 * 9.07328 * 17 15 14 19 19 Si 1.86802 * 120.00075 * 189.06828 * 17 15 14 20 20 H 1.48497 * 109.46995 * 84.99393 * 19 17 15 21 21 H 1.48497 * 109.47222 * 324.99067 * 19 17 15 22 22 H 1.48502 * 109.46692 * 204.99429 * 19 17 15 23 23 C 1.47428 * 108.70261 * 1.29115 * 14 13 11 24 24 C 1.55124 * 104.71992 * 335.55012 * 23 14 13 25 25 H 1.09006 * 111.19065 * 279.19363 * 24 23 14 26 26 O 1.42905 * 110.93980 * 155.29276 * 24 23 14 27 27 H 1.08999 * 109.46996 * 270.15821 * 1 2 3 28 28 H 1.08997 * 109.46836 * 30.15105 * 1 2 3 29 29 H 1.08992 * 109.47444 * 150.15667 * 1 2 3 30 30 H 0.96999 * 119.99502 * 359.97438 * 9 7 6 31 31 H 1.09003 * 109.47316 * 59.99576 * 10 9 7 32 32 H 1.09004 * 109.47201 * 299.99957 * 10 9 7 33 33 H 1.09003 * 109.88667 * 21.31809 * 13 11 10 34 34 H 1.09003 * 110.01476 * 260.22446 * 13 11 10 35 35 H 0.96997 * 119.99379 * 180.02562 * 18 17 15 36 36 H 1.08991 * 110.36854 * 94.48382 * 23 14 13 37 37 H 1.08999 * 110.36513 * 216.80406 * 23 14 13 38 38 H 0.96703 * 114.00004 * 67.95673 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0203 0.0000 4 8 3.4652 0.6264 -0.0059 5 7 3.6102 -0.5739 -0.0047 6 6 2.4279 -1.1521 0.0036 7 6 2.1032 -2.5988 0.0077 8 8 0.9435 -2.9612 0.0151 9 7 3.0945 -3.5120 0.0031 10 6 2.7737 -4.9414 0.0077 11 6 4.0694 -5.7550 0.0005 12 1 4.6871 -5.4863 -0.8565 13 6 4.8472 -5.5547 1.3182 14 7 5.4134 -6.8586 1.6934 15 6 6.1584 -7.1126 2.8140 16 1 6.2294 -6.3700 3.5950 17 6 6.8220 -8.3246 2.9464 18 7 6.8849 -9.1551 1.9272 19 14 7.6260 -8.7768 4.5708 20 1 6.6163 -9.3940 5.4678 21 1 8.1736 -7.5532 5.2096 22 1 8.7271 -9.7426 4.3261 23 6 5.0518 -7.8459 0.6601 24 6 3.7668 -7.2767 0.0034 25 1 2.8854 -7.4986 0.6051 26 8 3.6120 -7.7708 -1.3285 27 1 -0.3633 0.0028 1.0277 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3634 -0.8913 -0.5113 30 1 4.0203 -3.2227 -0.0031 31 1 2.1871 -5.1850 -0.8782 32 1 2.1983 -5.1818 0.9017 33 1 4.1708 -5.2059 2.0986 34 1 5.6488 -4.8307 1.1719 35 1 7.3483 -10.0021 2.0197 36 1 5.8502 -7.9337 -0.0766 37 1 4.8471 -8.8146 1.1161 38 1 3.4216 -8.7176 -1.3772 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958739969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:25 Heat of formation + Delta-G solvation = 54.038963 kcal Electronic energy + Delta-G solvation = -23621.133374 eV Core-core repulsion = 19890.898412 eV Total energy + Delta-G solvation = -3730.234961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.14900 -39.96358 -38.31364 -35.62615 -35.26685 -34.99264 -34.69841 -32.32519 -30.18906 -29.55376 -27.72876 -26.45556 -25.20110 -23.43887 -22.80199 -21.17947 -20.37111 -19.97176 -19.31836 -18.61851 -17.38613 -17.10719 -16.70629 -16.00379 -15.57479 -15.06245 -14.62311 -14.31878 -14.21567 -13.87534 -13.84260 -13.60714 -13.12879 -12.98637 -12.52283 -12.27815 -12.15166 -12.03457 -11.76142 -11.43022 -11.25292 -11.09159 -10.85510 -10.72394 -10.65879 -10.60071 -10.12002 -9.93613 -9.85899 -9.31025 -9.24447 -8.69361 -6.93158 -5.84675 -3.19429 0.50260 1.02160 2.44094 2.72845 3.08922 3.17367 3.34579 3.39967 3.41535 3.64479 4.36458 4.39464 4.55161 4.61655 4.79759 4.91896 5.10477 5.10758 5.25148 5.34069 5.38982 5.56920 5.63595 5.77334 5.85645 5.93100 6.06842 6.14435 6.29659 6.50309 6.71709 7.15080 7.25047 7.43348 7.65425 7.76162 8.05785 8.15695 8.16398 9.07568 9.69151 10.34594 11.27976 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.003320 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.028245 B = 8431.357828 C = 9292.915544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.061 3.939 3 N -0.359 5.359 4 O 0.343 5.657 5 N -0.317 5.317 6 C -0.042 4.042 7 C 0.604 3.396 8 O -0.516 6.516 9 N -0.701 5.701 10 C 0.133 3.867 11 C -0.106 4.106 12 H 0.089 0.911 13 C 0.139 3.861 14 N -0.599 5.599 15 C -0.234 4.234 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.918 5.918 19 Si 0.914 3.086 20 H -0.287 1.287 21 H -0.280 1.280 22 H -0.290 1.290 23 C 0.150 3.850 24 C 0.081 3.919 25 H 0.062 0.938 26 O -0.568 6.568 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.410 0.590 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.026 0.974 35 H 0.254 0.746 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.365 13.668 -5.786 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 N -0.086 5.086 4 O 0.117 5.883 5 N -0.037 5.037 6 C -0.208 4.208 7 C 0.386 3.614 8 O -0.390 6.390 9 N -0.352 5.352 10 C 0.010 3.990 11 C -0.125 4.125 12 H 0.107 0.893 13 C 0.013 3.987 14 N -0.326 5.326 15 C -0.362 4.362 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.564 5.564 19 Si 0.744 3.256 20 H -0.214 1.214 21 H -0.206 1.206 22 H -0.216 1.216 23 C 0.024 3.976 24 C 0.021 3.979 25 H 0.080 0.920 26 O -0.373 6.373 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.245 0.755 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.983 14.513 -5.849 19.117 hybrid contribution 0.346 -1.227 0.999 1.620 sum -10.637 13.286 -4.850 17.697 Atomic orbital electron populations 1.20348 0.82879 1.05247 1.04812 1.26245 1.00386 0.85127 0.98703 1.75059 0.91190 1.24040 1.18262 1.85073 1.23284 1.16628 1.63275 1.75407 1.22995 0.92815 1.12513 1.26136 0.88104 0.98551 1.07998 1.16423 0.85716 0.81421 0.77839 1.90818 1.18829 1.79500 1.49854 1.45920 1.09612 1.07040 1.72666 1.21592 0.97560 0.76892 1.02954 1.22403 0.95406 0.94504 1.00179 0.89257 1.21389 0.94892 0.90391 0.92001 1.44293 1.61350 1.02889 1.24117 1.19023 1.22438 1.00958 0.93788 0.90419 1.24858 0.99569 0.97874 0.97894 1.69936 1.46850 1.10873 1.28770 0.86118 0.78649 0.78081 0.82793 1.21413 1.20594 1.21617 1.22063 0.90936 0.93902 0.90706 1.23315 0.99342 0.92445 0.82821 0.91999 1.86382 1.94586 1.28764 1.27538 0.88768 0.89452 0.87916 0.75450 0.90414 0.90532 0.95346 0.95566 0.93535 0.94414 0.90973 0.77540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.22 36.01 0.37 -0.18 16 2 C 0.06 0.64 7.79 -79.33 -0.62 0.02 16 3 N -0.36 -3.89 12.22 33.75 0.41 -3.48 16 4 O 0.34 3.78 11.65 27.27 0.32 4.10 16 5 N -0.32 -3.74 12.13 33.49 0.41 -3.33 16 6 C -0.04 -0.50 7.56 -80.07 -0.61 -1.11 16 7 C 0.60 8.00 7.85 -12.13 -0.10 7.90 16 8 O -0.52 -7.72 15.96 5.36 0.09 -7.63 16 9 N -0.70 -9.07 5.40 -61.11 -0.33 -9.40 16 10 C 0.13 1.86 5.01 -4.04 -0.02 1.84 16 11 C -0.11 -1.74 2.74 -88.79 -0.24 -1.98 16 12 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 13 C 0.14 2.73 6.52 -3.07 -0.02 2.71 16 14 N -0.60 -14.74 3.39 -169.94 -0.58 -15.31 16 15 C -0.23 -6.35 10.24 -15.06 -0.15 -6.51 16 16 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 17 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 18 N -0.92 -26.18 10.68 55.49 0.59 -25.59 16 19 Si 0.91 21.57 29.56 -169.99 -5.03 16.55 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.15 3.44 5.16 -2.41 -0.01 3.43 16 24 C 0.08 1.44 3.89 -24.47 -0.10 1.35 16 25 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 26 O -0.57 -9.19 13.47 -35.23 -0.47 -9.66 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.80 7.32 -51.93 -0.38 0.42 16 30 H 0.41 4.97 8.18 -40.82 -0.33 4.64 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 33 H 0.03 0.55 7.77 -51.93 -0.40 0.15 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 37 H 0.07 1.82 6.95 -51.93 -0.36 1.46 16 38 H 0.38 4.65 9.12 45.56 0.42 5.07 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -31.30 328.55 -5.21 -36.51 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.98 Total: 5.07 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -1.59 Total: 7.23 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.51 Total: -57.11 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.07 Total: -13.20 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.30 -5.21 -36.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958739969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.553 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds