Wall clock time and date at job start Tue Mar 31 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30642 * 128.64874 * 2 1 4 4 O 1.20831 * 109.62352 * 180.29814 * 3 2 1 5 5 N 1.20904 * 115.91047 * 359.70010 * 4 3 2 6 6 C 1.31611 * 109.17404 * 359.97438 * 5 4 3 7 7 C 1.48272 * 128.70849 * 179.97438 * 6 5 4 8 8 O 1.21504 * 119.99952 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00394 * 0.02902 * 7 6 5 10 10 C 1.46495 * 120.00183 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.64128 * 303.31902 * 11 10 9 13 13 C 1.54325 * 110.71718 * 66.45279 * 11 10 9 14 14 N 1.47018 * 107.27099 * 140.73458 * 13 11 10 15 15 C 1.36941 * 125.65333 * 181.01921 * 14 13 11 16 16 H 1.08003 * 119.99654 * 10.75826 * 15 14 13 17 17 C 1.38811 * 120.00604 * 190.74952 * 15 14 13 18 18 N 1.31621 * 119.99472 * 9.07328 * 17 15 14 19 19 Si 1.86802 * 120.00075 * 189.06828 * 17 15 14 20 20 H 1.48497 * 109.46995 * 84.99393 * 19 17 15 21 21 H 1.48497 * 109.47222 * 324.99067 * 19 17 15 22 22 H 1.48502 * 109.46692 * 204.99429 * 19 17 15 23 23 C 1.47428 * 108.70261 * 1.29115 * 14 13 11 24 24 C 1.55124 * 104.71992 * 335.55012 * 23 14 13 25 25 H 1.09006 * 111.19065 * 279.19363 * 24 23 14 26 26 O 1.42905 * 110.93980 * 155.29276 * 24 23 14 27 27 H 1.08999 * 109.46996 * 270.15821 * 1 2 3 28 28 H 1.08997 * 109.46836 * 30.15105 * 1 2 3 29 29 H 1.08992 * 109.47444 * 150.15667 * 1 2 3 30 30 H 0.96999 * 119.99502 * 359.97438 * 9 7 6 31 31 H 1.09003 * 109.47316 * 59.99576 * 10 9 7 32 32 H 1.09004 * 109.47201 * 299.99957 * 10 9 7 33 33 H 1.09003 * 109.88667 * 21.31809 * 13 11 10 34 34 H 1.09003 * 110.01476 * 260.22446 * 13 11 10 35 35 H 0.96997 * 119.99379 * 180.02562 * 18 17 15 36 36 H 1.08991 * 110.36854 * 94.48382 * 23 14 13 37 37 H 1.08999 * 110.36513 * 216.80406 * 23 14 13 38 38 H 0.96703 * 114.00004 * 67.95673 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0203 0.0000 4 8 3.4652 0.6264 -0.0059 5 7 3.6102 -0.5739 -0.0047 6 6 2.4279 -1.1521 0.0036 7 6 2.1032 -2.5988 0.0077 8 8 0.9435 -2.9612 0.0151 9 7 3.0945 -3.5120 0.0031 10 6 2.7737 -4.9414 0.0077 11 6 4.0694 -5.7550 0.0005 12 1 4.6871 -5.4863 -0.8565 13 6 4.8472 -5.5547 1.3182 14 7 5.4134 -6.8586 1.6934 15 6 6.1584 -7.1126 2.8140 16 1 6.2294 -6.3700 3.5950 17 6 6.8220 -8.3246 2.9464 18 7 6.8849 -9.1551 1.9272 19 14 7.6260 -8.7768 4.5708 20 1 6.6163 -9.3940 5.4678 21 1 8.1736 -7.5532 5.2096 22 1 8.7271 -9.7426 4.3261 23 6 5.0518 -7.8459 0.6601 24 6 3.7668 -7.2767 0.0034 25 1 2.8854 -7.4986 0.6051 26 8 3.6120 -7.7708 -1.3285 27 1 -0.3633 0.0028 1.0277 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3634 -0.8913 -0.5113 30 1 4.0203 -3.2227 -0.0031 31 1 2.1871 -5.1850 -0.8782 32 1 2.1983 -5.1818 0.9017 33 1 4.1708 -5.2059 2.0986 34 1 5.6488 -4.8307 1.1719 35 1 7.3483 -10.0021 2.0197 36 1 5.8502 -7.9337 -0.0766 37 1 4.8471 -8.8146 1.1161 38 1 3.4216 -8.7176 -1.3772 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958739969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:24 Heat of formation + Delta-G solvation = 29.267112 kcal Electronic energy + Delta-G solvation = -23622.207562 eV Core-core repulsion = 19890.898412 eV Total energy + Delta-G solvation = -3731.309149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.00778 -41.07293 -39.79461 -36.71027 -36.47382 -36.12581 -35.78032 -34.06686 -31.65104 -30.41930 -29.35495 -27.76857 -26.66963 -24.88086 -23.66657 -22.53130 -21.76499 -21.37267 -20.18224 -19.65724 -18.90145 -18.40634 -18.11731 -17.18265 -16.94909 -16.60377 -15.85293 -15.75241 -15.38024 -15.06300 -14.75302 -14.52963 -14.42926 -14.36803 -14.05938 -13.68670 -13.36180 -13.07917 -13.03962 -12.93638 -12.79303 -12.44332 -12.39167 -12.29022 -11.96093 -11.88502 -11.73288 -11.42204 -11.36456 -10.84241 -10.71377 -10.34787 -8.91790 -7.91737 -5.28381 -0.42066 0.20876 1.44671 1.46432 1.47772 1.55940 1.72434 2.24560 2.33332 2.46163 2.73402 3.16879 3.27346 3.53010 3.56513 3.63892 3.74254 3.86719 4.06876 4.07571 4.38277 4.43105 4.54773 4.60373 4.67709 4.71886 4.84523 4.91230 5.04075 5.12143 5.25782 5.36282 5.47052 5.64977 6.11251 6.14834 6.73062 6.88200 7.03679 7.30459 7.70046 8.34966 9.19400 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.003320 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.028245 B = 8431.357828 C = 9292.915544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.069 3.931 3 N -0.365 5.365 4 O 0.346 5.654 5 N -0.322 5.322 6 C -0.057 4.057 7 C 0.608 3.392 8 O -0.533 6.533 9 N -0.699 5.699 10 C 0.146 3.854 11 C -0.090 4.090 12 H 0.090 0.910 13 C 0.137 3.863 14 N -0.622 5.622 15 C -0.248 4.248 16 H 0.081 0.919 17 C -0.060 4.060 18 N -0.946 5.946 19 Si 0.978 3.022 20 H -0.283 1.283 21 H -0.270 1.270 22 H -0.295 1.295 23 C 0.155 3.845 24 C 0.100 3.900 25 H 0.078 0.922 26 O -0.568 6.568 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.414 0.586 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.028 0.972 35 H 0.249 0.751 36 H 0.002 0.998 37 H 0.042 0.958 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.683 15.021 -5.655 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 N -0.092 5.092 4 O 0.120 5.880 5 N -0.040 5.040 6 C -0.222 4.222 7 C 0.391 3.609 8 O -0.408 6.408 9 N -0.351 5.351 10 C 0.023 3.977 11 C -0.109 4.109 12 H 0.108 0.892 13 C 0.012 3.988 14 N -0.349 5.349 15 C -0.377 4.377 16 H 0.099 0.901 17 C -0.254 4.254 18 N -0.594 5.594 19 Si 0.806 3.194 20 H -0.210 1.210 21 H -0.195 1.195 22 H -0.221 1.221 23 C 0.029 3.971 24 C 0.039 3.961 25 H 0.096 0.904 26 O -0.375 6.375 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.250 0.750 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.060 0.940 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -12.305 15.876 -5.727 20.887 hybrid contribution 0.756 -1.602 0.926 1.999 sum -11.549 14.274 -4.801 18.979 Atomic orbital electron populations 1.20522 0.80800 1.06082 1.05890 1.26707 1.01499 0.84238 0.97247 1.75079 0.91101 1.24122 1.18945 1.85068 1.23575 1.16252 1.63143 1.75387 1.23181 0.93167 1.12309 1.26029 0.88702 0.98254 1.09212 1.16461 0.85343 0.81831 0.77232 1.90809 1.19426 1.79920 1.50680 1.45839 1.09923 1.06633 1.72655 1.21367 0.95816 0.77097 1.03404 1.22230 0.96228 0.94080 0.98398 0.89189 1.21534 0.95148 0.88284 0.93793 1.44583 1.61248 1.05236 1.23861 1.19396 1.22319 1.01089 0.94847 0.90103 1.25667 1.00722 0.98011 1.01002 1.70132 1.47822 1.10972 1.30520 0.85110 0.77465 0.77769 0.79066 1.20969 1.19498 1.22146 1.21867 0.92494 0.93002 0.89694 1.22987 0.96945 0.92804 0.83337 0.90395 1.86357 1.94368 1.30549 1.26242 0.87427 0.87355 0.88265 0.74961 0.89568 0.90472 0.94447 0.95417 0.94149 0.98012 0.94007 0.75493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.22 71.24 0.73 -0.20 16 2 C 0.07 1.30 7.79 45.18 0.35 1.65 16 3 N -0.36 -7.28 12.22 -51.82 -0.63 -7.91 16 4 O 0.35 7.16 11.65 140.86 1.64 8.80 16 5 N -0.32 -7.15 12.13 -52.05 -0.63 -7.78 16 6 C -0.06 -1.27 7.56 44.29 0.34 -0.93 16 7 C 0.61 15.04 7.85 86.91 0.68 15.72 16 8 O -0.53 -14.93 15.96 -3.73 -0.06 -14.99 16 9 N -0.70 -16.79 5.40 -465.55 -2.51 -19.30 16 10 C 0.15 3.77 5.01 86.38 0.43 4.20 16 11 C -0.09 -2.83 2.74 -9.61 -0.03 -2.86 16 12 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 13 C 0.14 5.26 6.52 86.73 0.57 5.83 16 14 N -0.62 -30.83 3.39 -691.56 -2.35 -33.18 16 15 C -0.25 -13.56 10.24 84.03 0.86 -12.70 16 16 H 0.08 4.25 7.85 -2.91 -0.02 4.23 16 17 C -0.06 -3.35 5.40 84.86 0.46 -2.89 16 18 N -0.95 -55.49 10.68 21.65 0.23 -55.26 16 19 Si 0.98 44.72 29.56 68.60 2.03 46.75 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 C 0.16 7.29 5.16 86.93 0.45 7.74 16 24 C 0.10 3.44 3.89 32.06 0.12 3.56 16 25 H 0.08 2.49 8.05 -2.38 -0.02 2.47 16 26 O -0.57 -17.44 13.47 -148.98 -2.01 -19.44 16 27 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 1.34 7.32 -2.39 -0.02 1.32 16 30 H 0.41 9.36 8.18 -92.71 -0.76 8.60 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 2.04 8.06 -2.39 -0.02 2.02 16 33 H 0.04 1.38 7.77 -2.39 -0.02 1.36 16 34 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.00 0.10 8.07 -2.39 -0.02 0.08 16 37 H 0.04 2.18 6.95 -2.39 -0.02 2.16 16 38 H 0.40 9.12 9.12 -74.05 -0.68 8.44 16 Total: -1.00 -67.39 328.55 0.36 -67.03 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.31 Total: 16.15 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 4.96 Total: 19.13 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -5.89 Total: -123.43 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.43 Total: -25.63 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -67.39 0.36 -67.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958739969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.297 kcal (2) G-P(sol) polarization free energy of solvation -67.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds