Wall clock time and date at job start Tue Mar 31 2020 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99937 * 2 1 4 4 H 1.48501 * 109.46602 * 239.99437 * 3 2 1 5 5 H 1.48496 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46930 * 119.99407 * 3 2 1 7 7 C 1.38811 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00190 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99774 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.65236 * 359.95644 * 9 7 2 11 11 C 1.54316 * 107.27568 * 178.97773 * 10 9 7 12 12 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 13 13 H 1.09006 * 111.00657 * 153.57417 * 12 11 10 14 14 N 1.46496 * 111.03794 * 277.41470 * 12 11 10 15 15 C 1.34779 * 120.00475 * 198.66768 * 14 12 11 16 16 O 1.21287 * 119.99602 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00613 * 179.97438 * 15 14 12 18 18 H 1.09000 * 109.46270 * 39.98115 * 17 15 14 19 19 C 1.53039 * 109.46061 * 280.00124 * 17 15 14 20 20 C 1.50806 * 109.18486 * 286.67510 * 19 17 15 21 21 O 1.21229 * 120.01527 * 145.74627 * 20 19 17 22 22 N 1.34562 * 119.96941 * 325.77437 * 20 19 17 23 23 C 1.34345 * 120.98406 * 4.42834 * 22 20 19 24 24 O 1.21537 * 119.20722 * 192.04506 * 23 22 20 25 25 N 1.34289 * 121.58446 * 12.02329 * 23 22 20 26 26 C 1.47422 * 125.64571 * 179.97438 * 9 7 2 27 27 H 0.97006 * 120.00279 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.88493 * 59.55525 * 10 9 7 29 29 H 1.09005 * 110.00581 * 298.46835 * 10 9 7 30 30 H 1.09003 * 110.72312 * 219.44382 * 11 10 9 31 31 H 1.09003 * 110.72351 * 96.16743 * 11 10 9 32 32 H 0.96997 * 120.00351 * 18.67079 * 14 12 11 33 33 H 1.09000 * 109.52146 * 46.59196 * 19 17 15 34 34 H 1.09000 * 109.51678 * 166.70923 * 19 17 15 35 35 H 0.96996 * 119.51226 * 184.41008 * 22 20 19 36 36 H 0.96998 * 119.54101 * 185.71176 * 25 23 22 37 37 H 1.08998 * 110.36873 * 85.25284 * 26 9 7 38 38 H 1.09005 * 110.36491 * 322.92691 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5328 0.0009 11 6 -0.4485 -4.0441 -0.0255 12 6 0.8517 -4.6562 -0.6105 13 1 0.9837 -5.6854 -0.2765 14 7 0.8586 -4.5767 -2.0732 15 6 1.6868 -5.3648 -2.7871 16 8 2.4266 -6.1396 -2.2184 17 6 1.6935 -5.2835 -4.2919 18 1 1.6055 -4.2415 -4.5997 19 6 0.5136 -6.0818 -4.8510 20 6 0.8005 -7.5555 -4.7088 21 8 -0.1039 -8.3303 -4.4822 22 7 2.0610 -8.0099 -4.8329 23 6 3.0894 -7.1609 -4.9954 24 8 4.1745 -7.5995 -5.3230 25 7 2.9472 -5.8392 -4.8049 26 6 1.9334 -3.7311 0.0005 27 1 -0.4851 0.8401 -0.0004 28 1 -0.5579 -2.0523 -0.8826 29 1 -0.5565 -2.0838 0.9015 30 1 -1.2987 -4.2516 -0.6753 31 1 -0.6315 -4.4179 0.9819 32 1 0.2673 -3.9568 -2.5281 33 1 -0.3908 -5.8317 -4.2964 34 1 0.3745 -5.8370 -5.9040 35 1 2.2296 -8.9647 -4.8044 36 1 3.6852 -5.2443 -5.0104 37 1 2.1669 -4.0418 1.0189 38 1 2.8326 -3.7405 -0.6155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015773149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:50 Heat of formation + Delta-G solvation = -64.620257 kcal Electronic energy + Delta-G solvation = -24549.517810 eV Core-core repulsion = 20814.137399 eV Total energy + Delta-G solvation = -3735.380411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.01762 -39.67847 -39.02549 -37.49454 -35.90463 -34.46779 -33.95076 -32.09805 -31.04134 -29.28668 -27.55656 -25.95708 -24.46434 -23.69215 -21.74381 -20.28563 -20.20055 -19.79248 -18.41350 -18.18240 -17.29536 -16.98052 -16.47303 -16.30580 -15.77656 -15.22249 -14.93772 -14.71528 -14.58003 -14.29523 -13.86949 -13.65166 -13.38825 -12.91060 -12.67673 -12.35516 -12.02356 -11.91915 -11.04408 -11.00555 -10.95885 -10.81746 -10.60145 -10.51604 -10.42180 -10.33861 -10.23689 -10.08316 -9.76686 -9.33749 -8.90748 -8.64176 -6.91355 -5.80306 -3.13239 1.47169 2.19664 2.54013 2.69657 3.01619 3.25256 3.34469 3.39980 3.40408 3.93915 4.12339 4.42692 4.48554 4.65367 4.77575 4.98075 5.17329 5.35516 5.39415 5.63107 5.66155 5.72307 5.96576 6.07354 6.25085 6.37109 6.37991 6.51093 6.59335 6.86135 7.01497 7.23015 7.43580 7.46150 7.59038 7.71369 7.95997 8.15972 8.21583 9.13755 9.73490 10.38801 11.31424 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.003994 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.864589 B = 7008.950626 C = 7525.627690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.175 3.825 11 C -0.153 4.153 12 C 0.128 3.872 13 H 0.087 0.913 14 N -0.694 5.694 15 C 0.489 3.511 16 O -0.529 6.529 17 C 0.119 3.881 18 H 0.138 0.862 19 C -0.149 4.149 20 C 0.526 3.474 21 O -0.499 6.499 22 N -0.670 5.670 23 C 0.726 3.274 24 O -0.558 6.558 25 N -0.704 5.704 26 C 0.126 3.874 27 H 0.253 0.747 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.404 0.596 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.426 0.574 36 H 0.429 0.571 37 H 0.028 0.972 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -9.875 -10.869 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.051 3.949 11 C -0.192 4.192 12 C 0.023 3.977 13 H 0.105 0.895 14 N -0.345 5.345 15 C 0.272 3.728 16 O -0.405 6.405 17 C 0.009 3.991 18 H 0.156 0.844 19 C -0.190 4.190 20 C 0.314 3.686 21 O -0.371 6.371 22 N -0.339 5.339 23 C 0.426 3.574 24 O -0.432 6.432 25 N -0.362 5.362 26 C -0.001 4.001 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.239 0.761 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.268 0.732 36 H 0.269 0.731 37 H 0.045 0.955 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.496 -10.758 -10.459 15.079 hybrid contribution 0.506 1.255 -0.069 1.355 sum -0.990 -9.503 -10.528 14.217 Atomic orbital electron populations 1.69930 1.04819 1.25177 1.57185 1.24763 0.95707 0.97567 1.02234 0.86212 0.78468 0.83200 0.77947 1.21229 1.21588 1.21184 1.19002 0.90399 0.82372 1.43790 0.90627 1.44463 1.01424 0.99825 1.87307 1.21176 0.84578 0.87818 1.01365 1.23227 0.95431 1.00063 1.00433 1.22183 0.97834 0.99363 0.78328 0.89476 1.45812 1.40720 1.40297 1.07642 1.20806 0.81190 0.81473 0.89355 1.90751 1.39770 1.38268 1.71699 1.21128 0.84511 1.01234 0.92235 0.84446 1.22251 0.99981 0.90354 1.06406 1.20769 0.82009 0.91576 0.74263 1.90800 1.44084 1.58447 1.43741 1.44136 1.07258 1.12422 1.70110 1.15504 0.83498 0.81444 0.76962 1.91034 1.24519 1.75612 1.52059 1.44732 1.17178 1.05909 1.68422 1.21912 0.94674 0.86318 0.97163 0.93701 0.93524 0.93733 0.91433 0.90804 0.76136 0.85020 0.85352 0.73226 0.73120 0.95454 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.39 10.31 55.49 0.57 -24.82 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.01 10.28 -15.06 -0.15 -6.16 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.21 3.39 -170.09 -0.58 -14.79 16 10 C 0.18 3.78 5.36 -3.07 -0.02 3.77 16 11 C -0.15 -2.45 6.52 -24.90 -0.16 -2.61 16 12 C 0.13 2.07 3.32 -65.79 -0.22 1.85 16 13 H 0.09 1.40 7.73 -51.93 -0.40 1.00 16 14 N -0.69 -9.29 5.22 -51.74 -0.27 -9.56 16 15 C 0.49 6.43 6.71 -10.99 -0.07 6.36 16 16 O -0.53 -9.12 15.90 5.55 0.09 -9.03 16 17 C 0.12 1.00 3.63 -69.11 -0.25 0.75 16 18 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 19 C -0.15 -1.04 5.71 -27.81 -0.16 -1.20 16 20 C 0.53 5.68 7.44 -11.03 -0.08 5.59 16 21 O -0.50 -6.86 17.93 5.60 0.10 -6.76 16 22 N -0.67 -7.36 5.18 -16.02 -0.08 -7.44 16 23 C 0.73 8.88 7.98 -87.74 -0.70 8.18 16 24 O -0.56 -8.62 17.97 5.33 0.10 -8.53 16 25 N -0.70 -6.85 4.91 -60.11 -0.29 -7.14 16 26 C 0.13 2.53 6.92 -2.54 -0.02 2.51 16 27 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.05 1.08 7.38 -51.93 -0.38 0.70 16 29 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.40 4.66 8.62 -40.82 -0.35 4.31 16 33 H 0.13 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.43 4.28 8.86 -40.82 -0.36 3.92 16 36 H 0.43 3.58 8.90 -40.82 -0.36 3.22 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 323.11 15.07 4.87 4.87 Total: -1.00 -35.40 323.11 -7.21 -42.60 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -4.75 Total: 5.69 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: -1.93 Total: 18.76 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -0.65 Total: -63.74 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.28 Total: -24.32 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.40 -7.21 -42.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015773149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.016 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds