Wall clock time and date at job start Tue Mar 31 2020 03:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99412 * 2 1 4 4 H 1.48505 * 109.46990 * 239.99624 * 3 2 1 5 5 H 1.48504 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47400 * 119.99739 * 3 2 1 7 7 C 1.38808 * 120.00469 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99602 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64883 * 0.04407 * 9 7 2 11 11 C 1.55385 * 104.87682 * 204.09284 * 10 9 7 12 12 C 1.55159 * 101.36518 * 323.01595 * 11 10 9 13 13 H 1.08999 * 110.71716 * 153.94400 * 12 11 10 14 14 N 1.46500 * 110.71958 * 277.03892 * 12 11 10 15 15 C 1.34776 * 119.99907 * 202.55897 * 14 12 11 16 16 O 1.21284 * 119.99952 * 0.02562 * 15 14 12 17 17 C 1.50700 * 120.00056 * 180.02562 * 15 14 12 18 18 N 1.46495 * 109.46968 * 179.97438 * 17 15 14 19 19 C 1.34771 * 124.17698 * 90.00197 * 18 17 15 20 20 O 1.21228 * 127.15690 * 0.21727 * 19 18 17 21 21 C 1.51586 * 105.68441 * 179.97438 * 19 18 17 22 22 N 1.47307 * 103.59556 * 0.02562 * 21 19 18 23 23 C 1.33790 * 124.18038 * 269.94409 * 18 17 15 24 24 O 1.21543 * 123.77227 * 0.05720 * 23 18 17 25 25 C 1.47027 * 125.64992 * 179.97438 * 9 7 2 26 26 H 0.96993 * 120.00356 * 0.02562 * 1 2 3 27 27 H 1.09001 * 110.36825 * 322.92895 * 10 9 7 28 28 H 1.08999 * 110.37118 * 85.25439 * 10 9 7 29 29 H 1.09000 * 111.19401 * 204.97502 * 11 10 9 30 30 H 1.09001 * 111.02429 * 80.98127 * 11 10 9 31 31 H 0.96992 * 120.00001 * 22.55921 * 14 12 11 32 32 H 1.09009 * 109.46894 * 59.99968 * 17 15 14 33 33 H 1.08993 * 109.47271 * 300.00121 * 17 15 14 34 34 H 1.09003 * 110.59568 * 118.53071 * 21 19 18 35 35 H 1.08998 * 110.60019 * 241.31608 * 21 19 18 36 36 H 0.96995 * 126.69442 * 180.02562 * 22 21 19 37 37 H 1.08999 * 109.87975 * 59.56312 * 25 9 7 38 38 H 1.09001 * 109.88207 * 298.40069 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2849 2.7465 -0.0006 6 1 3.1038 1.6967 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2019 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 -0.1412 -2.5332 -0.0009 11 6 -0.4038 -3.9364 0.6127 12 6 0.7788 -4.7524 0.0270 13 1 1.0251 -5.5937 0.6749 14 7 0.4676 -5.2171 -1.3270 15 6 1.1141 -6.2832 -1.8388 16 8 1.9531 -6.8582 -1.1781 17 6 0.7944 -6.7609 -3.2318 18 7 1.6254 -7.9242 -3.5519 19 6 1.2686 -9.2002 -3.3054 20 8 0.2372 -9.5876 -2.7998 21 6 2.4229 -10.0508 -3.7977 22 7 3.3865 -9.0625 -4.3120 23 6 2.8317 -7.8511 -4.1259 24 8 3.3671 -6.8069 -4.4424 25 6 1.9321 -3.7274 0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5997 -1.7588 0.6141 28 1 -0.5261 -2.4871 -1.0197 29 1 -1.3599 -4.3397 0.2791 30 1 -0.3542 -3.9028 1.7011 31 1 -0.2036 -4.7575 -1.8552 32 1 0.9976 -5.9623 -3.9454 33 1 -0.2579 -7.0392 -3.2880 34 1 2.8584 -10.6188 -2.9756 35 1 2.0943 -10.7199 -4.5929 36 1 4.2518 -9.2488 -4.7088 37 1 2.5580 -3.8509 0.8843 38 1 2.5292 -3.8640 -0.9011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016204383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:00 Heat of formation + Delta-G solvation = -67.431449 kcal Electronic energy + Delta-G solvation = -24119.785194 eV Core-core repulsion = 20384.282881 eV Total energy + Delta-G solvation = -3735.502314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.39395 -40.93868 -39.68023 -38.90610 -37.21969 -35.70478 -35.51935 -33.69740 -31.19526 -30.01981 -28.82952 -28.23565 -26.43782 -23.97677 -23.08231 -22.09132 -21.42626 -21.25130 -19.20350 -19.02917 -18.76044 -17.87755 -17.61471 -17.25791 -16.79030 -16.42934 -16.31175 -16.20836 -15.66585 -15.29851 -15.27146 -14.96061 -14.76337 -14.46110 -14.07121 -13.87207 -13.43527 -13.34208 -13.00338 -12.79132 -12.38573 -12.21195 -12.14862 -12.06001 -11.86032 -11.69354 -11.47382 -11.38794 -10.76365 -10.74448 -10.41320 -10.17932 -8.91387 -7.79628 -5.23635 0.61295 1.00872 1.43973 1.46049 1.48493 1.55035 1.80630 2.22630 2.32168 2.48295 3.03846 3.29999 3.55109 3.71030 3.73630 3.80619 4.03287 4.12875 4.26670 4.30306 4.31691 4.32934 4.61952 4.66423 4.70484 4.86915 4.94703 5.03278 5.41594 5.49917 5.61857 5.79378 5.81601 5.97948 6.30501 6.31947 6.44760 7.05169 7.08968 7.11465 7.75276 8.38383 9.21454 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.026678 B = 0.003489 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.308723 B = 8024.014619 C = 8652.990401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.058 4.058 3 Si 0.979 3.021 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.622 5.622 10 C 0.153 3.847 11 C -0.131 4.131 12 C 0.146 3.854 13 H 0.095 0.905 14 N -0.698 5.698 15 C 0.498 3.502 16 O -0.576 6.576 17 C 0.101 3.899 18 N -0.568 5.568 19 C 0.518 3.482 20 O -0.498 6.498 21 C 0.077 3.923 22 N -0.707 5.707 23 C 0.696 3.304 24 O -0.588 6.588 25 C 0.127 3.873 26 H 0.250 0.750 27 H 0.077 0.923 28 H 0.001 0.999 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.414 0.586 32 H 0.136 0.864 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.455 0.545 37 H 0.024 0.976 38 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 -22.437 -9.609 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.251 4.251 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.349 5.349 10 C 0.029 3.971 11 C -0.170 4.170 12 C 0.040 3.960 13 H 0.113 0.887 14 N -0.350 5.350 15 C 0.284 3.716 16 O -0.456 6.456 17 C -0.025 4.025 18 N -0.313 5.313 19 C 0.308 3.692 20 O -0.370 6.370 21 C -0.049 4.049 22 N -0.373 5.373 23 C 0.397 3.603 24 O -0.464 6.464 25 C 0.000 4.000 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.019 0.981 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.251 0.749 32 H 0.154 0.846 33 H 0.175 0.825 34 H 0.168 0.832 35 H 0.187 0.813 36 H 0.302 0.698 37 H 0.042 0.958 38 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -0.119 -22.253 -9.005 24.006 hybrid contribution 0.710 1.542 -0.253 1.717 sum 0.591 -20.710 -9.258 22.693 Atomic orbital electron populations 1.69990 1.05843 1.25256 1.58077 1.25539 0.96718 1.00573 1.02290 0.85160 0.77243 0.78941 0.77996 1.20869 1.21318 1.20474 1.19339 0.90782 0.84015 1.43432 0.91178 1.44758 1.03052 1.00217 1.86835 1.21887 0.83417 0.94649 0.97191 1.23263 0.97293 0.95451 1.00969 1.21739 0.95383 0.95386 0.83454 0.88679 1.45792 1.41913 1.30477 1.16826 1.21311 0.80779 0.80079 0.89459 1.90672 1.34328 1.58211 1.62396 1.21572 0.98048 0.89205 0.93629 1.45971 1.19118 1.09532 1.56668 1.21676 0.88589 0.82784 0.76148 1.90811 1.27275 1.77404 1.41490 1.22735 0.85957 0.91815 1.04387 1.45322 1.22614 1.03998 1.65345 1.16063 0.80598 0.85602 0.78071 1.91025 1.65711 1.32111 1.57588 1.21754 0.95199 0.85860 0.97174 0.94073 0.90513 0.98130 0.87899 0.89985 0.74912 0.84585 0.82524 0.83155 0.81293 0.69807 0.95774 0.97606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.12 10.09 21.65 0.22 -54.91 16 2 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 3 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 7 C -0.25 -14.31 10.27 84.03 0.86 -13.45 16 8 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.62 -32.76 3.40 -691.04 -2.35 -35.11 16 10 C 0.15 7.19 5.87 87.02 0.51 7.70 16 11 C -0.13 -4.53 6.69 32.15 0.22 -4.31 16 12 C 0.15 5.22 3.28 46.18 0.15 5.37 16 13 H 0.10 3.34 7.62 -2.39 -0.02 3.33 16 14 N -0.70 -21.28 5.10 -436.91 -2.23 -23.50 16 15 C 0.50 15.46 7.90 87.66 0.69 16.15 16 16 O -0.58 -22.29 16.11 -3.04 -0.05 -22.34 16 17 C 0.10 2.25 6.18 85.63 0.53 2.78 16 18 N -0.57 -12.74 2.09 -777.21 -1.63 -14.36 16 19 C 0.52 9.60 8.32 87.94 0.73 10.33 16 20 O -0.50 -11.98 17.76 -2.87 -0.05 -12.03 16 21 C 0.08 0.56 7.97 85.76 0.68 1.25 16 22 N -0.71 -8.72 6.58 -480.30 -3.16 -11.88 16 23 C 0.70 16.65 8.62 179.44 1.55 18.19 16 24 O -0.59 -19.75 17.48 -3.85 -0.07 -19.81 16 25 C 0.13 5.77 6.99 86.73 0.61 6.38 16 26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.08 4.14 5.87 -2.39 -0.01 4.12 16 28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.41 10.70 8.63 -92.71 -0.80 9.90 16 32 H 0.14 2.84 7.86 -2.38 -0.02 2.82 16 33 H 0.16 2.44 8.00 -2.39 -0.02 2.42 16 34 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.17 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.45 3.17 8.96 -92.71 -0.83 2.34 16 37 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.01 0.29 8.04 -2.39 -0.02 0.27 16 Total: -1.00 -84.91 327.05 -0.80 -85.71 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -0.51 Total: 12.42 kcal Atomic # 6 Polarization: 40.55 SS G_CDS: 7.00 Total: 47.55 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -9.14 Total: -139.76 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.17 Total: -54.18 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -84.91 -0.80 -85.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016204383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.274 kcal (2) G-P(sol) polarization free energy of solvation -84.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds