Wall clock time and date at job start Tue Mar 31 2020 03:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99622 * 2 1 4 4 H 1.48498 * 109.47036 * 269.99534 * 3 2 1 5 5 H 1.48498 * 109.47643 * 29.99863 * 3 2 1 6 6 H 1.48500 * 109.46995 * 150.00117 * 3 2 1 7 7 C 1.38809 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00181 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00080 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00181 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.85027 * 23.80497 * 10 9 7 12 12 C 1.53790 * 113.61586 * 155.00294 * 10 9 7 13 13 C 1.53780 * 87.07967 * 89.11692 * 12 10 9 14 14 H 1.09002 * 113.61596 * 270.80320 * 13 12 10 15 15 N 1.46502 * 113.61423 * 139.98455 * 13 12 10 16 16 C 1.34769 * 120.00081 * 154.99939 * 15 13 12 17 17 O 1.21282 * 120.00372 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00090 * 179.97438 * 16 15 13 19 19 C 1.52995 * 109.47279 * 179.97438 * 18 16 15 20 20 H 1.09007 * 110.53630 * 52.17150 * 19 18 16 21 21 N 1.47309 * 110.80171 * 289.28939 * 19 18 16 22 22 C 1.34525 * 106.61823 * 241.75848 * 21 19 18 23 23 O 1.21543 * 123.77085 * 179.85399 * 22 21 19 24 24 N 1.33791 * 112.45685 * 359.58762 * 22 21 19 25 25 C 1.34766 * 111.64749 * 0.26475 * 24 22 21 26 26 O 1.21226 * 127.15862 * 180.02562 * 25 24 22 27 27 C 1.53783 * 87.08413 * 25.43267 * 13 12 10 28 28 H 0.96996 * 120.00018 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99981 * 0.02562 * 9 7 2 30 30 H 1.09005 * 113.60971 * 334.56601 * 12 10 9 31 31 H 1.08998 * 113.61036 * 203.66690 * 12 10 9 32 32 H 0.96999 * 119.99772 * 334.99532 * 15 13 12 33 33 H 1.08997 * 109.47253 * 59.99659 * 18 16 15 34 34 H 1.08998 * 109.46842 * 300.00243 * 18 16 15 35 35 H 0.97005 * 126.68989 * 61.64325 * 21 19 18 36 36 H 0.97004 * 124.17687 * 180.23812 * 24 22 21 37 37 H 1.09007 * 113.61164 * 89.11407 * 27 13 12 38 38 H 1.08996 * 113.61992 * 220.02015 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5277 -3.2970 -0.4050 12 6 5.5260 -2.3659 -0.5960 13 6 6.0130 -2.0233 0.8218 14 1 5.9890 -0.9569 1.0461 15 7 7.2908 -2.6493 1.1706 16 6 8.0815 -2.0902 2.1079 17 8 7.7355 -1.0686 2.6623 18 6 9.3957 -2.7345 2.4671 19 6 10.0917 -1.9052 3.5480 20 1 9.4185 -1.7282 4.3869 21 7 10.5766 -0.6282 2.9965 22 6 11.9144 -0.6313 3.1380 23 8 12.6338 0.2807 2.7802 24 7 12.3640 -1.7481 3.7216 25 6 11.3577 -2.5946 4.0166 26 8 11.4466 -3.6812 4.5468 27 6 4.7876 -2.7921 1.3437 28 1 -0.4850 0.8400 -0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 5.6405 -1.5473 -1.3067 31 1 5.9120 -3.3127 -0.9735 32 1 7.5677 -3.4663 0.7269 33 1 10.0303 -2.7833 1.5822 34 1 9.2159 -3.7424 2.8412 35 1 10.0367 0.0767 2.6058 36 1 13.2989 -1.9267 3.9089 37 1 4.9719 -3.8556 1.4964 38 1 4.3062 -2.3178 2.1988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020250202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:40 Heat of formation + Delta-G solvation = -45.105575 kcal Electronic energy + Delta-G solvation = -23292.694234 eV Core-core repulsion = 19558.160043 eV Total energy + Delta-G solvation = -3734.534191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.81500 -40.14378 -39.06609 -38.36814 -36.60000 -34.48943 -34.28505 -32.84863 -31.29991 -30.29784 -26.46343 -25.33362 -24.34684 -23.17721 -22.61535 -21.89178 -20.73756 -19.13978 -18.79774 -17.85517 -17.56786 -17.12304 -16.96374 -16.39765 -16.10928 -15.93663 -15.38040 -14.95856 -14.69938 -14.46939 -14.20909 -13.96093 -13.43222 -13.18319 -12.80049 -12.58863 -12.27486 -12.20243 -12.11969 -11.51096 -11.02216 -10.93249 -10.85914 -10.78373 -10.51299 -10.36325 -10.10707 -9.95896 -9.85817 -9.64780 -9.05507 -8.93987 -7.37702 -5.84495 -3.21881 1.07150 1.98162 2.35596 2.55735 2.62167 3.02900 3.34293 3.37542 3.42633 3.53079 3.96599 4.34964 4.51788 4.53028 4.79212 4.87061 4.91442 4.98728 5.09504 5.10706 5.33000 5.53655 5.58041 5.68743 5.89016 5.96146 6.12075 6.36880 6.37828 6.46524 6.48790 6.55856 6.77444 6.88211 7.33312 7.72317 7.91345 7.99575 8.34532 9.11456 9.83777 10.01503 11.33253 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.002975 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.600072 B = 9410.479317 C =10068.399378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.251 4.251 8 H 0.093 0.907 9 N -0.729 5.729 10 C 0.177 3.823 11 H 0.078 0.922 12 C -0.166 4.166 13 C 0.121 3.879 14 H 0.112 0.888 15 N -0.712 5.712 16 C 0.514 3.486 17 O -0.539 6.539 18 C -0.145 4.145 19 C 0.108 3.892 20 H 0.141 0.859 21 N -0.710 5.710 22 C 0.701 3.299 23 O -0.544 6.544 24 N -0.679 5.679 25 C 0.531 3.469 26 O -0.464 6.464 27 C -0.182 4.182 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.400 0.600 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.448 0.552 36 H 0.433 0.567 37 H 0.074 0.926 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.055 -8.524 4.636 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.111 0.889 9 N -0.369 5.369 10 C 0.064 3.936 11 H 0.096 0.904 12 C -0.206 4.206 13 C 0.017 3.983 14 H 0.130 0.870 15 N -0.361 5.361 16 C 0.299 3.701 17 O -0.416 6.416 18 C -0.187 4.187 19 C -0.002 4.002 20 H 0.158 0.842 21 N -0.376 5.376 22 C 0.400 3.600 23 O -0.418 6.418 24 N -0.351 5.351 25 C 0.316 3.684 26 O -0.333 6.333 27 C -0.224 4.224 28 H 0.071 0.929 29 H 0.196 0.804 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.234 0.766 33 H 0.124 0.876 34 H 0.140 0.860 35 H 0.294 0.706 36 H 0.276 0.724 37 H 0.093 0.907 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 23.839 -7.916 5.105 25.632 hybrid contribution 0.898 0.990 -0.203 1.352 sum 24.737 -6.925 4.902 26.152 Atomic orbital electron populations 1.69694 1.05124 1.26027 1.56847 1.24680 0.95253 0.97285 1.01582 0.86587 0.79376 0.84953 0.77869 1.20944 1.21542 1.20170 1.19080 0.80262 0.94883 1.43819 0.88946 1.42542 1.04104 1.01519 1.88770 1.20858 0.89734 0.90313 0.92689 0.90414 1.23928 0.99146 1.01860 0.95618 1.22733 0.80515 0.98823 0.96246 0.87047 1.46086 1.21128 1.28671 1.40260 1.20252 0.85160 0.84858 0.79847 1.90752 1.74342 1.24257 1.52231 1.21912 0.95695 1.01236 0.99827 1.21788 0.95158 0.84284 0.98939 0.84184 1.45651 1.05832 1.21019 1.65119 1.15916 0.83510 0.82100 0.78463 1.91076 1.59277 1.36979 1.54445 1.44320 1.12849 1.19583 1.58329 1.20745 0.86390 0.84227 0.77076 1.90869 1.85269 1.18062 1.39076 1.24289 0.96612 0.99293 1.02234 0.92896 0.80390 0.90903 0.89787 0.76631 0.87573 0.86029 0.70583 0.72442 0.90722 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.69 13.97 55.49 0.78 -27.91 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.76 27.74 -169.99 -4.71 17.04 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.25 -6.84 10.45 -15.06 -0.16 -7.00 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.73 -16.38 5.11 -52.63 -0.27 -16.65 16 10 C 0.18 3.05 4.56 -67.12 -0.31 2.74 16 11 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 12 C -0.17 -2.15 7.58 -25.91 -0.20 -2.35 16 13 C 0.12 1.61 4.12 -67.12 -0.28 1.33 16 14 H 0.11 1.82 7.46 -51.93 -0.39 1.43 16 15 N -0.71 -6.65 5.35 -53.02 -0.28 -6.94 16 16 C 0.51 4.97 7.76 -10.99 -0.09 4.88 16 17 O -0.54 -7.32 14.85 5.56 0.08 -7.23 16 18 C -0.15 -0.83 5.45 -27.88 -0.15 -0.98 16 19 C 0.11 0.72 3.13 -68.21 -0.21 0.51 16 20 H 0.14 0.95 7.89 -51.92 -0.41 0.54 16 21 N -0.71 -5.55 5.97 -59.19 -0.35 -5.90 16 22 C 0.70 6.28 8.99 -88.02 -0.79 5.49 16 23 O -0.54 -6.97 18.04 5.33 0.10 -6.87 16 24 N -0.68 -4.38 5.70 -15.79 -0.09 -4.47 16 25 C 0.53 3.71 8.14 -10.55 -0.09 3.63 16 26 O -0.46 -4.36 18.02 5.60 0.10 -4.26 16 27 C -0.18 -2.74 7.68 -25.92 -0.20 -2.93 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.36 8.11 5.76 -40.82 -0.24 7.87 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.40 2.45 8.73 -40.82 -0.36 2.09 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.45 3.74 8.49 -40.82 -0.35 3.40 16 36 H 0.43 1.94 8.96 -40.82 -0.37 1.58 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -35.40 329.45 -6.90 -42.30 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -4.65 Total: 10.48 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -2.56 Total: 5.47 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.22 Total: -61.88 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.28 Total: -18.37 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.40 -6.90 -42.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020250202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.809 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds