Wall clock time and date at job start Tue Mar 31 2020 03:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33224 * 126.01889 * 2 1 4 4 C 1.31530 * 109.76242 * 179.73962 * 3 2 1 5 5 O 1.35208 * 125.49306 * 179.97438 * 4 3 2 6 6 N 1.34946 * 109.01738 * 0.02562 * 4 3 2 7 7 H 0.96995 * 126.54523 * 179.97438 * 6 4 3 8 8 C 1.36723 * 126.01980 * 179.69633 * 2 1 3 9 9 C 1.46382 * 126.82467 * 0.26258 * 8 2 1 10 10 O 1.21734 * 119.99844 * 359.97438 * 9 8 2 11 11 N 1.34769 * 120.00005 * 179.97438 * 9 8 2 12 12 C 1.46499 * 120.00161 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.64108 * 36.68910 * 12 11 9 14 14 C 1.54321 * 110.72314 * 273.54672 * 12 11 9 15 15 N 1.47023 * 107.27559 * 219.44099 * 14 12 11 16 16 C 1.36933 * 125.64971 * 178.97314 * 15 14 12 17 17 H 1.07998 * 120.00013 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99987 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99746 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00093 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47236 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47081 * 120.00455 * 20 18 16 23 23 H 1.48495 * 109.47337 * 239.99936 * 20 18 16 24 24 C 1.47424 * 108.69928 * 358.94178 * 15 14 12 25 25 C 1.54909 * 104.83549 * 24.12610 * 24 15 14 26 26 H 1.09001 * 111.00754 * 204.91369 * 25 24 15 27 27 O 1.42905 * 111.00358 * 81.06564 * 25 24 15 28 28 H 1.08997 * 109.47751 * 90.02493 * 1 2 3 29 29 H 1.09006 * 109.47075 * 210.02115 * 1 2 3 30 30 H 1.08994 * 109.47050 * 330.02011 * 1 2 3 31 31 H 0.96695 * 113.99790 * 90.02817 * 5 4 3 32 32 H 0.97005 * 120.00106 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.88498 * 338.86109 * 14 12 11 34 34 H 1.09005 * 109.88468 * 100.02412 * 14 12 11 35 35 H 0.96997 * 119.99313 * 180.02562 * 19 18 16 36 36 H 1.09004 * 110.36875 * 142.96256 * 24 15 14 37 37 H 1.08996 * 110.36809 * 265.17531 * 24 15 14 38 38 H 0.96696 * 113.99861 * 67.80433 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5531 0.7094 0.0056 5 8 4.6149 1.5464 0.0068 6 7 3.6181 -0.6385 0.0089 7 1 4.4243 -1.1779 0.0128 8 6 2.3110 -1.1058 0.0059 9 6 1.8792 -2.5045 0.0079 10 8 0.6924 -2.7751 0.0047 11 7 2.7957 -3.4926 0.0134 12 6 2.3636 -4.8924 0.0160 13 1 1.4705 -5.0201 -0.5958 14 6 2.1130 -5.3839 1.4572 15 7 2.6172 -6.7623 1.5424 16 6 2.6009 -7.5503 2.6621 17 1 2.1914 -7.1681 3.5855 18 6 3.1108 -8.8404 2.6104 19 7 3.6104 -9.3060 1.4851 20 14 3.0880 -9.9156 4.1377 21 1 2.4777 -9.1637 5.2634 22 1 2.2900 -11.1390 3.8699 23 1 4.4776 -10.2994 4.4938 24 6 3.1425 -7.1558 0.2223 25 6 3.5063 -5.8207 -0.4739 26 1 3.4855 -5.9272 -1.5585 27 8 4.7789 -5.3431 -0.0326 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5135 31 1 4.9209 1.7923 0.8905 32 1 3.7415 -3.2770 0.0155 33 1 2.6480 -4.7492 2.1636 34 1 1.0450 -5.3658 1.6746 35 1 3.9663 -10.2076 1.4490 36 1 4.0303 -7.7778 0.3373 37 1 2.3794 -7.6867 -0.3468 38 1 5.5240 -5.8911 -0.3147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083547644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:36 Heat of formation + Delta-G solvation = -61.807870 kcal Electronic energy + Delta-G solvation = -24076.635369 eV Core-core repulsion = 20341.376912 eV Total energy + Delta-G solvation = -3735.258457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.37248 -40.90044 -39.35982 -38.35638 -36.39247 -35.70388 -34.37586 -33.50281 -31.85866 -30.39173 -29.01921 -27.87875 -26.36884 -24.08969 -22.78991 -22.33085 -21.41158 -21.09463 -20.40700 -19.27571 -18.78865 -18.25919 -17.43196 -17.08072 -16.80734 -16.60604 -16.03487 -15.80374 -15.69598 -14.91796 -14.73603 -14.67445 -14.30416 -14.21142 -13.61609 -13.54546 -13.35748 -13.23093 -13.04982 -12.92661 -12.77281 -12.27365 -12.11682 -11.91162 -11.86229 -11.52902 -11.19786 -11.06390 -10.88761 -10.73850 -10.26884 -9.50106 -8.90782 -7.81743 -5.24716 0.03750 1.29897 1.46330 1.47230 1.56487 1.57249 1.92774 2.14700 2.48158 2.79576 3.16717 3.29699 3.59152 3.71533 3.82064 3.90428 3.93613 4.07912 4.29311 4.43668 4.46858 4.70365 4.83770 4.85808 4.89354 4.94585 5.01127 5.31602 5.38941 5.46385 5.47457 5.70931 5.77703 6.25129 6.36030 6.64661 6.67862 6.86168 7.05853 7.08197 7.72632 8.34747 9.20312 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.025548 B = 0.003477 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.731787 B = 8050.607760 C = 8315.939026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.104 3.896 3 N -0.517 5.517 4 C 0.427 3.573 5 O -0.440 6.440 6 N -0.540 5.540 7 H 0.437 0.563 8 C -0.092 4.092 9 C 0.594 3.406 10 O -0.553 6.553 11 N -0.695 5.695 12 C 0.156 3.844 13 H 0.104 0.896 14 C 0.132 3.868 15 N -0.616 5.616 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.059 4.059 19 N -0.944 5.944 20 Si 0.979 3.021 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.287 1.287 24 C 0.125 3.875 25 C 0.091 3.909 26 H 0.097 0.903 27 O -0.564 6.564 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.433 0.567 32 H 0.412 0.588 33 H 0.021 0.979 34 H 0.015 0.985 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.002 0.998 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.159 17.548 -5.349 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.031 4.031 3 N -0.249 5.249 4 C 0.125 3.875 5 O -0.245 6.245 6 N -0.160 5.160 7 H 0.279 0.721 8 C -0.207 4.207 9 C 0.382 3.618 10 O -0.431 6.431 11 N -0.346 5.346 12 C 0.050 3.950 13 H 0.122 0.878 14 C 0.005 3.995 15 N -0.342 5.342 16 C -0.369 4.369 17 H 0.091 0.909 18 C -0.251 4.251 19 N -0.594 5.594 20 Si 0.807 3.193 21 H -0.198 1.198 22 H -0.218 1.218 23 H -0.214 1.214 24 C 0.000 4.000 25 C 0.030 3.970 26 H 0.114 0.886 27 O -0.373 6.373 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.295 0.705 32 H 0.249 0.751 33 H 0.039 0.961 34 H 0.033 0.967 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.020 0.980 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.808 18.456 -5.598 19.489 hybrid contribution 1.548 -2.201 1.114 2.912 sum 4.356 16.255 -4.484 17.416 Atomic orbital electron populations 1.20346 0.85379 1.03929 1.03777 1.21216 0.97619 0.86059 0.98189 1.70281 0.99628 1.30611 1.24408 1.20216 0.87555 0.79082 1.00674 1.84805 1.42108 1.60762 1.36809 1.43563 1.08502 1.07856 1.56050 0.72076 1.20505 0.84141 0.94154 1.21937 1.16904 0.85668 0.83074 0.76157 1.90834 1.17052 1.83296 1.51927 1.45517 1.10102 1.04794 1.74172 1.21892 0.97340 0.79664 0.96090 0.87830 1.21642 0.95828 0.86434 0.95592 1.44549 1.70943 1.10600 1.08152 1.19419 1.33568 0.94681 0.89275 0.90900 1.25517 1.01137 0.98194 1.00295 1.69944 1.47058 1.16735 1.25640 0.85005 0.77084 0.78335 0.78843 1.19756 1.21799 1.21417 1.22513 0.99356 0.93807 0.84330 1.23279 0.83375 0.92840 0.97462 0.88580 1.86171 1.15711 1.54754 1.80628 0.89763 0.90119 0.89615 0.70465 0.75056 0.96096 0.96734 0.94091 0.89115 0.97990 0.75255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.87 71.24 0.70 -1.06 16 2 C 0.10 2.69 7.14 41.99 0.30 2.99 16 3 N -0.52 -12.86 11.22 -301.67 -3.38 -16.25 16 4 C 0.43 8.24 9.43 179.99 1.70 9.94 16 5 O -0.44 -5.55 13.62 -84.89 -1.16 -6.70 16 6 N -0.54 -9.75 6.12 -300.13 -1.84 -11.58 16 7 H 0.44 5.32 8.32 -92.71 -0.77 4.55 16 8 C -0.09 -2.31 7.08 39.80 0.28 -2.03 16 9 C 0.59 17.60 7.77 86.36 0.67 18.27 16 10 O -0.55 -19.72 14.52 -4.46 -0.06 -19.78 16 11 N -0.69 -19.41 5.08 -441.15 -2.24 -21.65 16 12 C 0.16 5.35 3.12 46.18 0.14 5.50 16 13 H 0.10 3.62 7.69 -2.39 -0.02 3.60 16 14 C 0.13 5.73 6.99 86.73 0.61 6.34 16 15 N -0.62 -31.41 3.39 -691.99 -2.35 -33.76 16 16 C -0.24 -13.50 10.27 84.03 0.86 -12.64 16 17 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.06 -3.24 5.49 84.86 0.47 -2.78 16 19 N -0.94 -53.51 10.09 21.65 0.22 -53.29 16 20 Si 0.98 44.96 29.55 68.60 2.03 46.99 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 C 0.13 5.70 5.62 86.86 0.49 6.19 16 25 C 0.09 2.97 4.28 31.99 0.14 3.11 16 26 H 0.10 2.54 8.14 -2.39 -0.02 2.53 16 27 O -0.56 -16.40 12.23 -148.98 -1.82 -18.22 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 2.09 6.46 -2.38 -0.02 2.08 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.43 0.71 9.06 -74.06 -0.67 0.04 16 32 H 0.41 9.63 6.81 -92.70 -0.63 9.00 16 33 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 34 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 36 H 0.09 4.60 5.87 -2.38 -0.01 4.58 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.40 8.93 9.12 -74.06 -0.68 8.26 16 Total: -1.00 -74.25 322.43 -5.84 -80.09 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -1.59 Total: 20.34 kcal Atomic # 6 Polarization: 27.46 SS G_CDS: 6.36 Total: 33.82 kcal Atomic # 7 Polarization: -126.93 SS G_CDS: -9.59 Total: -136.53 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -3.04 Total: -44.71 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -74.25 -5.84 -80.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083547644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.280 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds