Wall clock time and date at job start Tue Mar 31 2020 03:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29963 * 125.30503 * 2 1 4 4 O 1.41873 * 107.41286 * 180.24875 * 3 2 1 5 5 N 1.41878 * 106.39091 * 359.71836 * 4 3 2 6 6 C 1.29949 * 107.41070 * 359.97438 * 5 4 3 7 7 C 1.50706 * 125.29861 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47117 * 90.03020 * 7 6 5 9 9 O 1.21289 * 119.99909 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99871 * 179.97438 * 10 8 7 12 12 H 1.08993 * 110.78380 * 36.78363 * 11 10 8 13 13 C 1.54327 * 110.72108 * 273.54072 * 11 10 8 14 14 N 1.47022 * 107.27336 * 219.44674 * 13 11 10 15 15 C 1.36936 * 125.64736 * 178.97248 * 14 13 11 16 16 H 1.08003 * 119.99909 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99697 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00113 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99553 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47564 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47227 * 120.00302 * 19 17 15 22 22 H 1.48508 * 109.47074 * 239.99933 * 19 17 15 23 23 C 1.47425 * 108.70334 * 358.94217 * 14 13 11 24 24 C 1.54915 * 104.83334 * 24.12789 * 23 14 13 25 25 H 1.08995 * 111.00392 * 204.91661 * 24 23 14 26 26 O 1.42901 * 111.00253 * 81.06291 * 24 23 14 27 27 H 1.09001 * 109.47156 * 270.22458 * 1 2 3 28 28 H 1.09000 * 109.47426 * 30.22901 * 1 2 3 29 29 H 1.09009 * 109.47095 * 150.22555 * 1 2 3 30 30 H 1.09000 * 109.47374 * 330.02627 * 7 6 5 31 31 H 1.09005 * 109.46957 * 210.02391 * 7 6 5 32 32 H 0.96996 * 119.99898 * 359.97438 * 10 8 7 33 33 H 1.08997 * 109.87800 * 338.86858 * 13 11 10 34 34 H 1.09000 * 109.87987 * 99.87098 * 13 11 10 35 35 H 0.97003 * 119.99386 * 179.97438 * 18 17 15 36 36 H 1.08997 * 110.36855 * 142.96531 * 23 14 13 37 37 H 1.08997 * 110.36655 * 265.29403 * 23 14 13 38 38 H 0.96700 * 113.99672 * 67.80895 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6247 -0.0059 5 7 3.5710 -0.7935 -0.0026 6 6 2.3213 -1.1498 0.0050 7 6 1.8210 -2.5713 0.0103 8 6 1.6615 -3.0425 1.4328 9 8 1.9283 -2.2974 2.3519 10 7 1.2224 -4.2918 1.6838 11 6 1.0679 -4.7499 3.0666 12 1 0.7090 -3.9418 3.7040 13 6 2.3972 -5.3203 3.6046 14 7 2.0690 -6.5030 4.4139 15 6 2.9732 -7.3089 5.0528 16 1 4.0297 -7.0952 4.9843 17 6 2.5319 -8.3997 5.7891 18 7 1.2443 -8.6596 5.8729 19 14 3.7654 -9.4985 6.6611 20 1 5.1400 -8.9952 6.4115 21 1 3.4917 -9.4890 8.1206 22 1 3.6450 -10.8854 6.1440 23 6 0.6051 -6.6772 4.4244 24 6 0.1123 -5.9703 3.1371 25 1 -0.9242 -5.6494 3.2399 26 8 0.2743 -6.8142 1.9953 27 1 -0.3633 0.0040 1.0277 28 1 -0.3634 0.8879 -0.5174 29 1 -0.3634 -0.8921 -0.5104 30 1 2.5372 -3.2105 -0.5061 31 1 0.8582 -2.6196 -0.4984 32 1 1.0087 -4.8875 0.9487 33 1 3.0409 -5.6070 2.7731 34 1 2.8984 -4.5739 4.2209 35 1 0.9361 -9.4222 6.3872 36 1 0.3489 -7.7363 4.3974 37 1 0.1731 -6.2039 5.3061 38 1 -0.3024 -7.5905 1.9951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083905140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:12 Heat of formation + Delta-G solvation = 9.274682 kcal Electronic energy + Delta-G solvation = -23872.419094 eV Core-core repulsion = 20140.243008 eV Total energy + Delta-G solvation = -3732.176086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.61662 -41.01127 -39.39898 -36.33392 -35.68087 -35.45276 -34.47510 -33.61308 -31.09446 -29.99098 -29.59015 -28.50220 -26.38831 -23.90850 -22.60022 -22.18194 -21.50480 -21.14583 -19.25725 -18.38020 -18.26338 -17.87219 -16.97436 -16.90284 -16.72310 -16.42115 -15.86243 -15.53389 -15.26793 -15.04731 -14.67054 -14.52433 -14.33526 -14.24374 -13.88058 -13.56680 -13.22043 -13.11763 -12.89885 -12.85233 -12.77186 -12.60784 -12.23021 -12.12234 -12.09238 -11.90420 -11.83516 -11.66607 -11.06131 -10.85638 -10.69868 -10.13138 -8.90128 -7.81873 -5.24682 -0.55489 0.88047 1.45599 1.46292 1.48387 1.51606 1.56626 2.00400 2.19427 2.48113 2.81655 3.22519 3.29228 3.47568 3.63387 3.86046 3.89894 3.90477 3.98060 4.17604 4.34067 4.43928 4.48100 4.53264 4.67054 4.75469 4.77212 4.86757 4.97903 5.13663 5.35572 5.44851 5.49080 5.73129 5.83229 6.26613 6.54548 6.95400 7.09255 7.22003 7.73303 8.34916 9.19826 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.003276 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.765532 B = 8545.198328 C = 9128.482223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.100 3.900 3 N -0.309 5.309 4 O -0.019 6.019 5 N -0.296 5.296 6 C 0.104 3.896 7 C -0.072 4.072 8 C 0.516 3.484 9 O -0.585 6.585 10 N -0.687 5.687 11 C 0.157 3.843 12 H 0.098 0.902 13 C 0.129 3.871 14 N -0.617 5.617 15 C -0.242 4.242 16 H 0.069 0.931 17 C -0.058 4.058 18 N -0.942 5.942 19 Si 0.978 3.022 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.122 3.878 24 C 0.095 3.905 25 H 0.102 0.898 26 O -0.561 6.561 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.148 0.852 31 H 0.189 0.811 32 H 0.425 0.575 33 H 0.022 0.978 34 H 0.002 0.998 35 H 0.250 0.750 36 H 0.091 0.909 37 H -0.001 1.001 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 9.666 -16.798 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 N -0.058 5.058 4 O -0.153 6.153 5 N -0.041 5.041 6 C -0.080 4.080 7 C -0.112 4.112 8 C 0.302 3.698 9 O -0.465 6.465 10 N -0.340 5.340 11 C 0.050 3.950 12 H 0.116 0.884 13 C 0.002 3.998 14 N -0.343 5.343 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.251 4.251 18 N -0.592 5.592 19 Si 0.806 3.194 20 H -0.200 1.200 21 H -0.218 1.218 22 H -0.212 1.212 23 C -0.003 4.003 24 C 0.035 3.965 25 H 0.119 0.881 26 O -0.370 6.370 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.152 0.848 30 H 0.166 0.834 31 H 0.207 0.793 32 H 0.264 0.736 33 H 0.040 0.960 34 H 0.020 0.980 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.017 0.983 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -8.249 11.322 -16.209 21.424 hybrid contribution 0.235 -1.534 1.077 1.889 sum -8.014 9.788 -15.132 19.724 Atomic orbital electron populations 1.20944 0.80464 1.07810 1.06061 1.25320 1.02274 0.87712 0.92962 1.79869 0.88593 1.21005 1.16367 1.93354 1.21875 1.13981 1.86042 1.79886 1.19494 0.91156 1.13597 1.24400 0.89364 0.99472 0.94799 1.20602 1.08748 0.87085 0.94725 1.20718 0.76082 0.81691 0.91260 1.90785 1.51407 1.56118 1.48203 1.45534 1.66269 1.13733 1.08435 1.21784 0.94257 0.94991 0.83944 0.88404 1.21665 0.96410 0.88363 0.93358 1.44558 1.03311 1.28467 1.57962 1.19392 0.88921 1.05102 1.23703 0.91269 1.25497 0.98151 1.00041 1.01367 1.69939 1.12914 1.30436 1.45872 0.85028 0.78236 0.78494 0.77635 1.20015 1.21775 1.21182 1.22561 0.82868 1.01844 0.93037 1.23232 0.97672 0.89242 0.86369 0.88083 1.86188 1.68355 1.40463 1.41950 0.87971 0.87704 0.84815 0.83400 0.79341 0.73564 0.95999 0.97967 0.94038 0.89132 0.98312 0.75256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.23 71.23 0.73 0.01 16 2 C 0.10 1.91 7.19 43.48 0.31 2.22 16 3 N -0.31 -8.19 12.98 -47.16 -0.61 -8.80 16 4 O -0.02 -0.62 13.71 70.17 0.96 0.35 16 5 N -0.30 -8.63 12.98 -47.15 -0.61 -9.24 16 6 C 0.10 2.19 5.68 43.49 0.25 2.43 16 7 C -0.07 -0.89 6.05 29.10 0.18 -0.72 16 8 C 0.52 11.94 7.82 87.66 0.69 12.63 16 9 O -0.59 -20.00 15.77 -3.06 -0.05 -20.05 16 10 N -0.69 -15.71 5.09 -436.91 -2.22 -17.93 16 11 C 0.16 5.05 3.12 46.18 0.14 5.19 16 12 H 0.10 3.27 7.70 -2.39 -0.02 3.26 16 13 C 0.13 5.62 6.99 86.73 0.61 6.23 16 14 N -0.62 -31.55 3.39 -691.98 -2.35 -33.90 16 15 C -0.24 -13.75 10.27 84.03 0.86 -12.89 16 16 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.06 -3.21 5.49 84.86 0.47 -2.74 16 18 N -0.94 -53.34 10.09 21.65 0.22 -53.12 16 19 Si 0.98 45.36 29.55 68.60 2.03 47.38 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 23 C 0.12 5.47 5.62 86.86 0.49 5.96 16 24 C 0.10 2.90 4.28 31.99 0.14 3.04 16 25 H 0.10 2.36 8.14 -2.39 -0.02 2.35 16 26 O -0.56 -15.04 12.23 -148.98 -1.82 -16.86 16 27 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.13 -0.08 7.13 -2.38 -0.02 -0.10 16 30 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.19 0.06 7.13 -2.38 -0.02 0.04 16 32 H 0.43 7.30 7.57 -92.71 -0.70 6.60 16 33 H 0.02 0.98 8.03 -2.39 -0.02 0.96 16 34 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.09 4.53 5.87 -2.39 -0.01 4.51 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.40 8.13 9.12 -74.06 -0.68 7.45 16 Total: -1.00 -83.07 327.39 0.14 -82.93 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -0.25 Total: 7.87 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 4.85 Total: 21.37 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -5.58 Total: -122.99 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.91 Total: -36.56 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -83.07 0.14 -82.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083905140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.205 kcal (2) G-P(sol) polarization free energy of solvation -83.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds