Wall clock time and date at job start Tue Mar 31 2020 03:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30644 * 128.64212 * 2 1 4 4 O 1.20840 * 109.61864 * 180.02562 * 3 2 1 5 5 N 1.20906 * 115.90680 * 359.69609 * 4 3 2 6 6 C 1.31605 * 109.17836 * 0.49755 * 5 4 3 7 7 C 1.48275 * 128.71152 * 179.82474 * 6 5 4 8 8 O 1.21497 * 120.00222 * 179.67188 * 7 6 5 9 9 N 1.34781 * 120.00090 * 359.67437 * 7 6 5 10 10 C 1.46499 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46208 * 324.97375 * 10 9 7 12 12 C 1.53044 * 109.46007 * 84.93549 * 10 9 7 13 13 C 1.52755 * 109.38132 * 181.25927 * 12 10 9 14 14 N 1.46923 * 109.00900 * 305.58408 * 13 12 10 15 15 C 1.36943 * 120.62930 * 233.58508 * 14 13 12 16 16 H 1.08004 * 119.99477 * 152.17479 * 15 14 13 17 17 C 1.38811 * 119.99955 * 332.17173 * 15 14 13 18 18 N 1.31614 * 120.00254 * 342.76805 * 17 15 14 19 19 Si 1.86800 * 119.99811 * 162.76720 * 17 15 14 20 20 H 1.48495 * 109.47047 * 270.00192 * 19 17 15 21 21 H 1.48504 * 109.46831 * 30.00016 * 19 17 15 22 22 H 1.48496 * 109.47210 * 149.99747 * 19 17 15 23 23 C 1.46927 * 118.73893 * 53.31139 * 14 13 12 24 24 C 1.53046 * 109.45791 * 204.99746 * 10 9 7 25 25 H 1.09004 * 109.49497 * 58.66620 * 24 10 9 26 26 O 1.42894 * 109.49909 * 298.57021 * 24 10 9 27 27 H 1.09009 * 109.46803 * 269.97355 * 1 2 3 28 28 H 1.09001 * 109.46912 * 29.96686 * 1 2 3 29 29 H 1.08995 * 109.47187 * 149.97293 * 1 2 3 30 30 H 0.97006 * 119.99849 * 359.97438 * 9 7 6 31 31 H 1.09007 * 109.49256 * 301.33300 * 12 10 9 32 32 H 1.08998 * 109.49776 * 61.39965 * 12 10 9 33 33 H 1.09005 * 109.50719 * 185.70148 * 13 12 10 34 34 H 1.09006 * 109.43430 * 65.42411 * 13 12 10 35 35 H 0.97000 * 119.99965 * 179.97438 * 18 17 15 36 36 H 1.09004 * 109.58525 * 66.43417 * 23 14 13 37 37 H 1.08995 * 109.58430 * 186.71314 * 23 14 13 38 38 H 0.96705 * 113.99942 * 180.16232 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6265 -0.0005 5 7 3.6101 -0.5738 0.0049 6 6 2.4279 -1.1520 -0.0007 7 6 2.1033 -2.5988 -0.0010 8 8 0.9436 -2.9612 -0.0007 9 7 3.0946 -3.5120 -0.0017 10 6 2.7738 -4.9414 -0.0014 11 1 1.8735 -5.1114 0.5890 12 6 2.5369 -5.4110 -1.4386 13 6 2.1719 -6.8943 -1.4336 14 7 3.2154 -7.6415 -0.7185 15 6 3.8353 -8.7112 -1.3074 16 1 4.8447 -8.9726 -1.0258 17 6 3.1663 -9.4596 -2.2662 18 7 1.8572 -9.3741 -2.3723 19 14 4.1240 -10.5881 -3.4058 20 1 4.5206 -9.8394 -4.6253 21 1 5.3400 -11.0791 -2.7090 22 1 3.2727 -11.7430 -3.7889 23 6 3.5856 -7.2155 0.6380 24 6 3.9387 -5.7252 0.6077 25 1 4.1220 -5.3740 1.6232 26 8 5.1116 -5.5289 -0.1845 27 1 -0.3633 -0.0005 1.0278 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8897 -0.5142 30 1 4.0205 -3.2226 -0.0023 31 1 1.7225 -4.8361 -1.8796 32 1 3.4446 -5.2638 -2.0237 33 1 2.1019 -7.2554 -2.4597 34 1 1.2147 -7.0306 -0.9300 35 1 1.3898 -9.8967 -3.0426 36 1 2.7461 -7.3786 1.3140 37 1 4.4465 -7.7903 0.9793 38 1 5.8904 -5.9999 0.1424 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090853636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:41 Heat of formation + Delta-G solvation = 29.908688 kcal Electronic energy + Delta-G solvation = -24321.378957 eV Core-core repulsion = 20590.097628 eV Total energy + Delta-G solvation = -3731.281329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.01950 -41.27969 -39.56264 -36.62667 -36.38132 -35.96949 -35.65733 -33.70089 -31.84214 -30.66091 -30.22917 -27.65957 -26.30872 -24.10512 -23.78124 -23.50367 -21.79746 -21.18845 -20.19413 -19.62151 -18.94730 -18.20969 -17.62447 -17.38158 -16.59543 -16.21838 -16.03656 -15.62832 -15.44519 -15.18560 -15.00003 -14.62730 -14.43033 -14.41974 -13.81940 -13.68309 -13.05727 -13.02110 -12.94587 -12.82901 -12.71207 -12.43752 -12.33377 -12.13385 -12.07663 -11.90220 -11.67120 -11.43376 -11.31651 -10.90556 -10.52169 -10.21025 -8.67628 -7.86435 -5.30770 -0.42437 0.19488 1.44264 1.48060 1.50321 1.57572 1.73358 2.24018 2.33785 2.51588 2.73950 3.28392 3.35373 3.53739 3.60475 3.71368 3.80459 4.00084 4.05803 4.23587 4.33621 4.58382 4.64786 4.68948 4.70285 4.85609 4.89310 4.99008 5.08011 5.09947 5.28106 5.46387 5.64213 5.69827 6.19612 6.38310 6.79225 6.96807 7.14841 7.29798 7.84543 8.35943 9.20387 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.029703 B = 0.003534 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.448032 B = 7920.837101 C = 8251.484971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.068 3.932 3 N -0.363 5.363 4 O 0.349 5.651 5 N -0.319 5.319 6 C -0.056 4.056 7 C 0.603 3.397 8 O -0.536 6.536 9 N -0.688 5.688 10 C 0.167 3.833 11 H 0.090 0.910 12 C -0.128 4.128 13 C 0.183 3.817 14 N -0.598 5.598 15 C -0.254 4.254 16 H 0.073 0.927 17 C -0.053 4.053 18 N -0.936 5.936 19 Si 0.965 3.035 20 H -0.290 1.290 21 H -0.265 1.265 22 H -0.298 1.298 23 C 0.112 3.888 24 C 0.097 3.903 25 H 0.087 0.913 26 O -0.566 6.566 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.416 0.584 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.054 0.946 34 H -0.001 1.001 35 H 0.248 0.752 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 17.887 7.753 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 N -0.090 5.090 4 O 0.122 5.878 5 N -0.037 5.037 6 C -0.221 4.221 7 C 0.386 3.614 8 O -0.412 6.412 9 N -0.339 5.339 10 C 0.063 3.937 11 H 0.108 0.892 12 C -0.168 4.168 13 C 0.056 3.944 14 N -0.321 5.321 15 C -0.384 4.384 16 H 0.090 0.910 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.794 3.206 20 H -0.218 1.218 21 H -0.189 1.189 22 H -0.225 1.225 23 C -0.014 4.014 24 C 0.036 3.964 25 H 0.105 0.895 26 O -0.373 6.373 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.253 0.747 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.017 0.983 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.044 18.531 7.336 20.035 hybrid contribution 0.259 -1.661 -0.585 1.780 sum 2.304 16.870 6.751 18.316 Atomic orbital electron populations 1.20512 0.81018 1.05897 1.05938 1.26663 1.01446 0.84318 0.97362 1.75080 0.91071 1.23937 1.18943 1.85056 1.23508 1.16240 1.62969 1.75363 1.22946 0.93089 1.12337 1.25979 0.88805 0.98036 1.09244 1.16640 0.85512 0.82075 0.77184 1.90822 1.19711 1.79934 1.50730 1.45892 1.09828 1.05993 1.72195 1.20958 0.97815 0.77632 0.97274 0.89171 1.22164 1.00501 0.97789 0.96351 1.20391 0.89120 0.87554 0.97310 1.44098 1.43684 1.32150 1.12201 1.19513 0.95663 1.04528 1.18687 0.90958 1.25766 0.95788 0.99957 1.03295 1.70182 1.07342 1.44581 1.36158 0.85299 0.78163 0.77894 0.79275 1.21770 1.18932 1.22505 1.21792 0.99299 0.93624 0.86703 1.22406 0.85209 0.95012 0.93781 0.89522 1.86415 1.20398 1.74029 1.56496 0.87190 0.87337 0.88766 0.74678 0.93117 0.92462 0.92743 0.98312 0.94258 0.95343 0.90500 0.75913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.22 71.24 0.73 -0.40 16 2 C 0.07 1.40 7.79 45.18 0.35 1.75 16 3 N -0.36 -7.53 12.22 -51.80 -0.63 -8.16 16 4 O 0.35 7.32 11.65 140.84 1.64 8.96 16 5 N -0.32 -7.28 12.13 -52.04 -0.63 -7.91 16 6 C -0.06 -1.35 7.56 44.29 0.34 -1.02 16 7 C 0.60 17.20 7.81 86.91 0.68 17.88 16 8 O -0.54 -17.82 15.62 -3.71 -0.06 -17.87 16 9 N -0.69 -19.15 5.05 -444.86 -2.25 -21.39 16 10 C 0.17 5.44 2.20 45.02 0.10 5.54 16 11 H 0.09 3.11 7.58 -2.39 -0.02 3.09 16 12 C -0.13 -5.09 5.49 30.53 0.17 -4.92 16 13 C 0.18 8.91 5.28 86.22 0.46 9.37 16 14 N -0.60 -28.65 2.94 -699.93 -2.06 -30.71 16 15 C -0.25 -13.41 9.58 84.03 0.81 -12.61 16 16 H 0.07 3.65 7.89 -2.91 -0.02 3.62 16 17 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 18 N -0.94 -55.29 11.19 21.65 0.24 -55.05 16 19 Si 0.96 44.50 29.59 68.60 2.03 46.53 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 23 C 0.11 4.11 6.16 86.36 0.53 4.64 16 24 C 0.10 2.83 3.38 30.67 0.10 2.94 16 25 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 26 O -0.57 -16.37 12.09 -148.98 -1.80 -18.17 16 27 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.64 7.31 -2.39 -0.02 1.62 16 30 H 0.42 10.45 8.11 -92.70 -0.75 9.70 16 31 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.06 2.40 7.61 -2.39 -0.02 2.38 16 33 H 0.05 3.05 6.04 -2.38 -0.01 3.04 16 34 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 35 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 2.59 7.93 -2.39 -0.02 2.57 16 38 H 0.39 8.44 9.08 -74.05 -0.67 7.76 16 Total: -1.00 -66.06 322.91 0.86 -65.20 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.30 Total: 17.91 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 4.67 Total: 20.66 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -5.33 Total: -123.22 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.22 Total: -27.08 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.06 0.86 -65.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090853636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.114 kcal (2) G-P(sol) polarization free energy of solvation -66.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds