Wall clock time and date at job start Tue Mar 31 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.51263 * 2 1 4 4 N 1.46502 * 109.47258 * 305.00228 * 3 2 1 5 5 C 1.34773 * 120.00224 * 179.97438 * 4 3 2 6 6 O 1.21500 * 119.99975 * 359.97438 * 5 4 3 7 7 C 1.48279 * 120.00078 * 180.02562 * 5 4 3 8 8 C 1.47494 * 128.71164 * 179.70288 * 7 5 4 9 9 N 1.30644 * 102.71547 * 179.84401 * 8 7 5 10 10 O 1.20840 * 109.61917 * 0.43014 * 9 8 7 11 11 N 1.20904 * 115.90629 * 359.69009 * 10 9 8 12 12 C 1.53294 * 109.51186 * 120.10050 * 2 1 3 13 13 N 1.47151 * 108.38240 * 67.62463 * 12 2 1 14 14 C 1.36939 * 120.97961 * 230.50748 * 13 12 2 15 15 H 1.08005 * 119.99678 * 153.74180 * 14 13 12 16 16 C 1.38805 * 120.00214 * 333.74957 * 14 13 12 17 17 N 1.31622 * 119.99998 * 160.03897 * 16 14 13 18 18 Si 1.86798 * 120.00102 * 340.03578 * 16 14 13 19 19 H 1.48500 * 109.47220 * 91.88846 * 18 16 14 20 20 H 1.48502 * 109.47522 * 211.89156 * 18 16 14 21 21 H 1.48503 * 109.47051 * 331.88966 * 18 16 14 22 22 C 1.47153 * 118.03935 * 50.53628 * 13 12 2 23 23 C 1.53302 * 108.38168 * 309.46213 * 22 13 12 24 24 O 1.42966 * 109.22252 * 52.30336 * 23 22 13 25 25 H 1.08997 * 109.47634 * 299.89595 * 1 2 3 26 26 H 1.08995 * 109.47335 * 59.90117 * 1 2 3 27 27 H 1.09002 * 109.47273 * 179.89685 * 1 2 3 28 28 H 1.09000 * 109.47148 * 64.99705 * 3 2 1 29 29 H 1.09000 * 109.47352 * 185.00067 * 3 2 1 30 30 H 0.97001 * 119.99984 * 0.02562 * 4 3 2 31 31 H 1.07996 * 128.64235 * 359.97223 * 8 7 5 32 32 H 1.09007 * 109.67881 * 187.34579 * 12 2 1 33 33 H 1.08997 * 109.68663 * 307.86125 * 12 2 1 34 34 H 0.97003 * 119.99777 * 179.97438 * 17 16 14 35 35 H 1.08997 * 109.68377 * 69.17949 * 22 13 12 36 36 H 1.08999 * 109.68593 * 189.74328 * 22 13 12 37 37 H 1.09000 * 109.51355 * 172.22291 * 23 22 13 38 38 H 1.09002 * 109.51365 * 292.32783 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.4574 2.1671 -1.1314 5 6 1.7664 3.4633 -1.3328 6 8 2.5287 4.0309 -0.5758 7 6 1.1752 4.1972 -2.4776 8 6 1.3724 5.6047 -2.8720 9 7 0.6258 5.7118 -3.9387 10 8 0.0845 4.6549 -4.1628 11 7 0.3385 3.7576 -3.3934 12 6 2.0420 -0.7246 1.2501 13 7 1.6959 -2.1502 1.1345 14 6 1.0616 -2.8066 2.1553 15 1 0.4479 -3.6697 1.9433 16 6 1.2072 -2.3626 3.4623 17 7 0.3283 -2.7118 4.3778 18 14 2.6505 -1.2695 3.9221 19 1 2.2549 0.1555 3.7874 20 1 3.0501 -1.5417 5.3262 21 1 3.7940 -1.5533 3.0182 22 6 2.0522 -2.8498 -0.1101 23 6 1.5396 -2.0216 -1.2940 24 8 2.0075 -0.6768 -1.1653 25 1 -0.3634 0.5122 0.8909 26 1 -0.3634 0.5153 -0.8890 27 1 -0.3634 -1.0277 -0.0019 28 1 1.7530 1.9297 0.9314 29 1 3.1273 1.4427 -0.0896 30 1 0.8479 1.7143 -1.7351 31 1 1.9837 6.3585 -2.3982 32 1 3.1241 -0.6141 1.3211 33 1 1.5709 -0.3028 2.1378 34 1 0.4303 -2.4018 5.2913 35 1 3.1352 -2.9532 -0.1761 36 1 1.5872 -3.8356 -0.1232 37 1 1.9114 -2.4488 -2.2253 38 1 0.4496 -2.0297 -1.2992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108291842.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:56 Heat of formation + Delta-G solvation = 75.474167 kcal Electronic energy + Delta-G solvation = -24486.393670 eV Core-core repulsion = 20757.088209 eV Total energy + Delta-G solvation = -3729.305461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.23952 -40.18577 -39.13534 -35.46249 -35.01791 -34.78508 -34.63144 -32.07379 -31.64817 -28.53874 -27.50833 -26.35303 -25.15786 -24.24956 -23.68065 -21.46024 -20.90080 -19.35925 -19.33397 -18.82191 -17.91548 -17.22166 -16.31711 -15.97506 -15.61565 -15.33800 -15.05819 -14.71537 -14.44418 -14.09939 -13.91509 -13.54206 -13.12758 -12.97046 -12.45179 -12.43883 -12.24660 -11.96564 -11.67954 -11.62403 -11.47770 -11.16498 -11.09309 -10.95245 -10.69638 -10.44420 -10.26165 -9.83496 -9.58420 -9.49488 -9.30306 -8.65167 -7.10470 -6.06284 -3.44055 0.44435 0.99518 2.38771 2.70062 3.10616 3.18520 3.21887 3.41656 3.42856 3.65845 3.93405 4.41012 4.43721 4.56210 4.63189 4.99781 5.05309 5.11779 5.21969 5.32245 5.59840 5.67334 5.72069 5.75342 5.91679 5.95620 6.08603 6.17223 6.18651 6.37118 6.40630 6.54105 6.68006 7.12574 7.52649 7.73699 7.76733 8.07525 8.19330 8.76528 9.57568 9.93176 11.09146 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.024851 B = 0.003992 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.455538 B = 7012.733801 C = 7560.036959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 C 0.133 3.867 4 N -0.694 5.694 5 C 0.601 3.399 6 O -0.517 6.517 7 C -0.038 4.038 8 C 0.038 3.962 9 N -0.355 5.355 10 O 0.341 5.659 11 N -0.319 5.319 12 C 0.109 3.891 13 N -0.603 5.603 14 C -0.262 4.262 15 H 0.089 0.911 16 C 0.026 3.974 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.286 1.286 20 H -0.300 1.300 21 H -0.269 1.269 22 C 0.113 3.887 23 C 0.043 3.957 24 O -0.380 6.380 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.412 0.588 31 H 0.228 0.772 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.264 0.736 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 11.987 -14.712 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C 0.010 3.990 4 N -0.346 5.346 5 C 0.383 3.617 6 O -0.391 6.391 7 C -0.204 4.204 8 C -0.148 4.148 9 N -0.079 5.079 10 O 0.115 5.885 11 N -0.040 5.040 12 C -0.018 4.018 13 N -0.327 5.327 14 C -0.390 4.390 15 H 0.107 0.893 16 C -0.173 4.173 17 N -0.547 5.547 18 Si 0.708 3.292 19 H -0.214 1.214 20 H -0.228 1.228 21 H -0.194 1.194 22 C -0.013 4.013 23 C -0.034 4.034 24 O -0.300 6.300 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.249 0.751 31 H 0.244 0.756 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.778 12.199 -14.980 19.335 hybrid contribution 0.967 0.397 1.063 1.491 sum 1.744 12.595 -13.917 18.851 Atomic orbital electron populations 1.22250 0.94709 1.04198 1.01256 1.22262 0.94321 0.90056 0.88749 1.21569 0.99241 0.89591 0.88593 1.45860 1.47965 1.09831 1.30985 1.16472 0.81282 0.81920 0.82074 1.90855 1.35213 1.67837 1.45175 1.26317 1.00266 0.94381 0.99393 1.27752 0.99186 0.95678 0.92195 1.75075 1.09748 1.06251 1.16811 1.85095 1.50913 1.10882 1.41574 1.75414 1.12652 1.14224 1.01664 1.21916 0.98180 0.86007 0.95671 1.44301 1.69215 1.03728 1.15500 1.18889 1.22358 1.13133 0.84645 0.89346 1.25246 0.97882 0.98633 0.95571 1.69816 1.34215 1.47613 1.03060 0.87062 0.85180 0.79836 0.77144 1.21377 1.22827 1.19425 1.21639 0.97857 0.95688 0.86142 1.23109 0.98924 0.82491 0.98900 1.87848 1.72813 1.26238 1.43070 0.91424 0.93404 0.89990 0.89207 0.89896 0.75150 0.75567 0.94496 0.89826 0.92584 0.95057 0.90924 0.89516 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 7.87 37.16 0.29 -2.34 16 2 C 0.09 1.46 0.78 -90.47 -0.07 1.39 16 3 C 0.13 1.98 4.85 -4.04 -0.02 1.96 16 4 N -0.69 -9.05 5.19 -61.11 -0.32 -9.37 16 5 C 0.60 7.85 7.85 -12.13 -0.10 7.75 16 6 O -0.52 -7.99 17.05 5.37 0.09 -7.89 16 7 C -0.04 -0.41 7.56 -80.07 -0.61 -1.02 16 8 C 0.04 0.33 12.63 -14.29 -0.18 0.15 16 9 N -0.36 -3.35 12.22 30.71 0.38 -2.97 16 10 O 0.34 3.33 11.65 27.26 0.32 3.65 16 11 N -0.32 -3.40 12.13 33.49 0.41 -2.99 16 12 C 0.11 2.25 3.05 -3.53 -0.01 2.23 16 13 N -0.60 -13.50 2.35 -171.82 -0.40 -13.91 16 14 C -0.26 -6.95 10.10 -15.06 -0.15 -7.10 16 15 H 0.09 2.50 8.06 -52.48 -0.42 2.07 16 16 C 0.03 0.73 5.26 -17.43 -0.09 0.63 16 17 N -0.90 -26.74 13.97 55.49 0.78 -25.96 16 18 Si 0.88 21.56 24.28 -169.99 -4.13 17.43 16 19 H -0.29 -6.69 6.58 56.52 0.37 -6.31 16 20 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 21 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 22 C 0.11 2.08 6.74 -3.53 -0.02 2.06 16 23 C 0.04 0.67 6.60 37.31 0.25 0.92 16 24 O -0.38 -6.26 10.18 -35.23 -0.36 -6.62 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.63 6.57 -51.93 -0.34 0.29 16 27 H 0.08 1.45 6.11 -51.93 -0.32 1.13 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.41 4.99 6.84 -40.82 -0.28 4.71 16 31 H 0.23 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.04 0.78 6.86 -51.93 -0.36 0.43 16 33 H 0.08 1.87 4.60 -51.93 -0.24 1.63 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.29 7.96 -51.93 -0.41 0.88 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.84 6.25 -51.93 -0.32 0.51 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -30.46 312.86 -3.67 -34.13 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.43 Total: 3.16 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -0.71 Total: 6.63 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.83 Total: -55.20 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.05 Total: -10.86 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.13 Total: 17.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.46 -3.67 -34.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108291842.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.600 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds