Wall clock time and date at job start Tue Mar 31 2020 04:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.50697 * 109.46859 * 150.00027 * 3 2 1 6 6 O 1.21280 * 120.00613 * 5.00509 * 5 3 2 7 7 N 1.34776 * 119.99644 * 184.99578 * 5 3 2 8 8 C 1.46502 * 120.00249 * 179.97438 * 7 5 3 9 9 C 1.50693 * 109.47377 * 180.02562 * 8 7 5 10 10 O 1.21300 * 120.00067 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00270 * 180.02562 * 9 8 7 12 12 C 1.37092 * 120.00230 * 180.02562 * 11 9 8 13 13 H 1.07995 * 120.00412 * 359.97438 * 12 11 9 14 14 C 1.38952 * 119.99823 * 180.02562 * 12 11 9 15 15 N 1.31407 * 120.00311 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 120.00014 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46974 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47140 * 119.99843 * 16 14 12 19 19 H 1.48494 * 109.47043 * 239.99785 * 16 14 12 20 20 C 1.50699 * 109.46791 * 270.00175 * 3 2 1 21 21 C 1.39869 * 126.04349 * 324.69000 * 20 3 2 22 22 N 1.30834 * 108.20252 * 179.82091 * 21 20 3 23 23 N 1.40083 * 108.20869 * 0.43730 * 22 21 20 24 24 C 1.46503 * 126.04336 * 179.74163 * 23 22 21 25 25 C 1.34957 * 107.92342 * 359.71981 * 23 22 21 26 26 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 29 29 H 0.97007 * 120.00221 * 0.02562 * 7 5 3 30 30 H 1.08996 * 109.47430 * 300.01234 * 8 7 5 31 31 H 1.09003 * 109.46551 * 60.00539 * 8 7 5 32 32 H 0.97005 * 119.99507 * 0.02562 * 11 9 8 33 33 H 0.96998 * 120.00481 * 179.97438 * 15 14 12 34 34 H 1.08001 * 125.89731 * 359.97438 * 21 20 3 35 35 H 1.09006 * 109.46821 * 269.97458 * 24 23 22 36 36 H 1.09002 * 109.46611 * 29.97131 * 24 23 22 37 37 H 1.08998 * 109.47340 * 149.97848 * 24 23 22 38 38 H 1.07999 * 126.12730 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 3.3387 1.2637 0.7104 6 8 3.7898 0.2044 1.0913 7 7 4.0256 2.4038 0.9223 8 6 5.3167 2.3635 1.6134 9 6 5.8723 3.7601 1.7219 10 8 5.2506 4.6971 1.2671 11 7 7.0599 3.9680 2.3242 12 6 7.5650 5.2386 2.4234 13 1 7.0116 6.0729 2.0185 14 6 8.7897 5.4529 3.0440 15 7 9.4634 4.4377 3.5362 16 14 9.4785 7.1841 3.1785 17 1 8.5344 8.1426 2.5497 18 1 9.6604 7.5346 4.6100 19 1 10.7883 7.2512 2.4821 20 6 2.2146 1.7643 -1.4208 21 6 2.5693 0.9541 -2.5044 22 7 2.6482 1.7086 -3.5703 23 7 2.3555 3.0265 -3.1964 24 6 2.3371 4.1909 -4.0853 25 6 2.0929 3.0340 -1.8726 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 3.6647 3.2512 0.6179 30 1 5.1815 1.9479 2.6119 31 1 6.0105 1.7388 1.0508 32 1 7.5572 3.2186 2.6876 33 1 10.3185 4.5872 3.9691 34 1 2.7451 -0.1109 -2.4679 35 1 3.3277 4.6453 -4.1092 36 1 2.0574 3.8760 -5.0906 37 1 1.6129 4.9176 -3.7172 38 1 1.8327 3.8986 -1.2800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117559189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:34 Heat of formation + Delta-G solvation = -31.519403 kcal Electronic energy + Delta-G solvation = -23516.071078 eV Core-core repulsion = 19782.126028 eV Total energy + Delta-G solvation = -3733.945050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44087 -39.57804 -38.29089 -37.29919 -34.44548 -33.72877 -33.39646 -31.51415 -31.28496 -28.74348 -27.47140 -26.63872 -25.30185 -24.18797 -21.23560 -21.05003 -20.02255 -19.58584 -18.16832 -17.58903 -17.16986 -16.48970 -15.76373 -15.52593 -15.45076 -15.01169 -14.88273 -14.72994 -14.41703 -14.21456 -13.79858 -13.67429 -13.24261 -13.07959 -12.83359 -12.63400 -12.45258 -12.19419 -11.82627 -11.65879 -11.48267 -11.15950 -10.82271 -10.43012 -10.34569 -10.11278 -9.66533 -9.63599 -9.51956 -8.77673 -8.65482 -8.51400 -8.11873 -6.53099 -3.95226 1.71527 2.36170 2.56326 2.92800 2.99874 3.08659 3.20956 3.27282 3.72522 4.02949 4.15386 4.37229 4.67682 4.83137 4.87388 4.94082 4.98913 5.00936 5.15117 5.15999 5.22103 5.30369 5.31016 5.55299 5.64821 5.75482 5.92157 5.97555 6.06492 6.49435 6.67746 6.79875 6.96758 7.44280 7.56671 7.82962 7.90416 8.42522 8.49070 9.02770 9.37785 9.85351 10.63834 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.003518 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.626110 B = 7956.345894 C = 9035.707158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.351 6.351 3 C 0.159 3.841 4 H 0.090 0.910 5 C 0.519 3.481 6 O -0.528 6.528 7 N -0.703 5.703 8 C 0.111 3.889 9 C 0.429 3.571 10 O -0.599 6.599 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.893 5.893 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.270 4.270 21 C 0.081 3.919 22 N -0.300 5.300 23 N -0.372 5.372 24 C 0.101 3.899 25 C 0.076 3.924 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.408 0.592 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.396 0.604 33 H 0.274 0.726 34 H 0.186 0.814 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.523 -3.091 -9.536 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.096 3.904 4 H 0.108 0.892 5 C 0.303 3.697 6 O -0.403 6.403 7 N -0.358 5.358 8 C -0.017 4.017 9 C 0.215 3.785 10 O -0.486 6.486 11 N -0.183 5.183 12 C -0.434 4.434 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.759 3.241 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.283 4.283 21 C -0.106 4.106 22 N -0.120 5.120 23 N -0.153 5.153 24 C -0.041 4.041 25 C -0.071 4.071 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.246 0.754 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.203 0.797 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.047 -3.227 -10.826 19.624 hybrid contribution 0.299 1.078 1.071 1.549 sum -15.748 -2.149 -9.755 18.649 Atomic orbital electron populations 1.22849 0.80802 1.02966 0.99987 1.88023 1.19486 1.24682 1.94643 1.19835 0.93363 0.86475 0.90701 0.89244 1.20139 0.86103 0.84027 0.79454 1.90702 1.69238 1.29730 1.50662 1.45501 1.21066 1.10000 1.59230 1.20946 0.85295 0.97135 0.98306 1.19733 0.84036 0.89486 0.85258 1.90476 1.60686 1.43656 1.53792 1.41804 1.16969 1.10105 1.49455 1.19766 1.02770 0.85290 1.35622 0.87650 1.25329 0.96320 0.99691 0.96373 1.69618 1.15147 1.30854 1.37744 0.85764 0.78775 0.81536 0.78039 1.19166 1.20582 1.20616 1.20173 1.18046 0.93360 0.96688 1.23714 0.97261 1.00343 0.89245 1.77407 1.23712 0.87347 1.23583 1.48494 1.53022 1.07234 1.06586 1.21903 1.03710 0.84157 0.94299 1.22341 1.00275 0.98907 0.85620 0.89296 0.93919 0.93898 0.75432 0.89718 0.89846 0.77000 0.91608 0.79715 0.90332 0.89316 0.89336 0.80458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.81 101.05 1.09 1.37 16 2 O -0.35 -4.68 9.60 -55.09 -0.53 -5.21 16 3 C 0.16 2.04 2.96 -29.04 -0.09 1.96 16 4 H 0.09 0.90 7.79 -51.93 -0.40 0.49 16 5 C 0.52 8.58 7.17 -10.99 -0.08 8.50 16 6 O -0.53 -10.60 16.51 -14.30 -0.24 -10.83 16 7 N -0.70 -11.77 5.48 -61.48 -0.34 -12.10 16 8 C 0.11 2.06 6.15 -5.20 -0.03 2.03 16 9 C 0.43 9.74 7.85 -10.99 -0.09 9.66 16 10 O -0.60 -14.94 15.24 5.54 0.08 -14.86 16 11 N -0.55 -13.52 5.29 -10.97 -0.06 -13.58 16 12 C -0.31 -8.21 9.68 -14.94 -0.14 -8.36 16 13 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 15 N -0.89 -23.77 13.05 55.50 0.72 -23.05 16 16 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 C -0.27 -3.38 5.05 -105.05 -0.53 -3.91 16 21 C 0.08 1.09 11.64 -17.37 -0.20 0.89 16 22 N -0.30 -4.16 12.58 30.62 0.39 -3.78 16 23 N -0.37 -4.27 4.01 -68.15 -0.27 -4.55 16 24 C 0.10 0.73 11.47 59.85 0.69 1.42 16 25 C 0.08 0.83 11.40 -17.22 -0.20 0.63 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.41 6.52 7.44 -40.82 -0.30 6.22 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -34.53 342.10 -4.55 -39.08 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -4.77 Total: 13.65 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 0.33 Total: 14.76 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.44 Total: -57.06 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.68 Total: -30.90 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.53 -4.55 -39.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117559189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.556 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds