Wall clock time and date at job start Tue Mar 31 2020 03:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00173 * 2 1 4 4 H 1.48506 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46763 * 299.99176 * 3 2 1 6 6 H 1.48495 * 109.47216 * 59.99786 * 3 2 1 7 7 C 1.38955 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00024 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99827 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00452 * 0.02562 * 10 9 7 12 12 C 1.50708 * 120.00019 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47256 * 180.02562 * 12 10 9 14 14 C 1.46896 * 110.99936 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47228 * 179.97438 * 14 13 12 16 16 N 1.46493 * 109.47084 * 179.97438 * 15 14 13 17 17 C 1.34784 * 119.99864 * 180.02562 * 16 15 14 18 18 O 1.21283 * 119.99649 * 359.72839 * 17 16 15 19 19 C 1.50694 * 119.99988 * 179.72721 * 17 16 15 20 20 C 1.50698 * 109.47166 * 179.97438 * 19 17 16 21 21 C 1.41382 * 126.80382 * 124.70753 * 20 19 17 22 22 C 1.35450 * 103.98724 * 179.89091 * 21 20 19 23 23 O 1.34037 * 106.44669 * 0.37273 * 22 21 20 24 24 N 1.20921 * 111.56701 * 359.74481 * 23 22 21 25 25 H 0.97000 * 119.99414 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00033 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.46607 * 60.00627 * 12 10 9 28 28 H 1.08997 * 109.47278 * 300.00990 * 12 10 9 29 29 H 1.00895 * 110.99595 * 303.95714 * 13 12 10 30 30 H 1.09007 * 109.47217 * 60.00286 * 14 13 12 31 31 H 1.08993 * 109.47271 * 300.00223 * 14 13 12 32 32 H 1.09007 * 109.46593 * 60.00143 * 15 14 13 33 33 H 1.09006 * 109.47216 * 300.00601 * 15 14 13 34 34 H 0.97000 * 120.00740 * 359.72857 * 16 15 14 35 35 H 1.08998 * 109.47224 * 299.99701 * 19 17 16 36 36 H 1.09002 * 109.47054 * 60.00213 * 19 17 16 37 37 H 1.08005 * 128.00407 * 0.02562 * 21 20 19 38 38 H 1.08001 * 126.77440 * 180.09926 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2436 -4.8630 0.0022 13 7 2.1982 -5.9796 0.0027 14 6 1.4979 -7.2709 0.0026 15 6 2.5227 -8.4069 0.0025 16 7 1.8243 -9.6946 0.0031 17 6 2.5291 -10.8435 0.0036 18 8 3.7414 -10.8112 -0.0013 19 6 1.8106 -12.1682 0.0105 20 6 2.8201 -13.2871 0.0090 21 6 2.9129 -14.3452 0.9421 22 6 3.9678 -15.0745 0.5062 23 8 4.4309 -14.4551 -0.5886 24 7 3.7829 -13.4678 -0.8483 25 1 -0.4849 0.8401 -0.0004 26 1 0.3534 -2.3906 0.0016 27 1 0.6167 -4.9209 -0.8876 28 1 0.6172 -4.9205 0.8923 29 1 2.8330 -5.9128 -0.7787 30 1 0.8733 -7.3454 -0.8876 31 1 0.8727 -7.3451 0.8923 32 1 3.1476 -8.3325 0.8926 33 1 3.1477 -8.3324 -0.8875 34 1 0.8546 -9.7206 0.0075 35 1 1.1894 -12.2400 0.9032 36 1 1.1822 -12.2452 -0.8768 37 1 2.2863 -14.5305 1.8021 38 1 4.3612 -15.9746 0.9550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125104399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:01 Heat of formation + Delta-G solvation = -7.844995 kcal Electronic energy + Delta-G solvation = -21920.562484 eV Core-core repulsion = 18187.644033 eV Total energy + Delta-G solvation = -3732.918451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.22583 -39.91700 -38.33724 -36.39580 -34.93745 -34.38475 -33.76041 -32.06189 -31.26038 -30.50458 -28.74364 -25.96937 -23.98221 -23.46022 -22.42316 -21.88750 -20.49173 -19.29799 -18.14177 -17.98371 -17.90395 -17.15466 -16.33577 -16.21854 -15.92489 -15.55498 -15.08229 -14.61478 -14.30496 -14.14954 -13.85213 -13.63310 -13.50908 -13.35492 -13.08277 -12.80641 -12.34938 -11.93321 -11.59432 -11.53127 -11.47726 -11.42606 -11.05863 -10.57202 -10.34694 -10.23755 -10.07926 -9.92282 -9.53468 -9.29068 -8.52010 -8.14770 -7.97897 -6.43286 -3.84000 1.23618 1.85555 2.38702 2.84174 2.99638 3.15919 3.26704 3.34377 3.73155 3.88507 4.08527 4.16923 4.37112 4.52075 4.72196 4.80998 4.86026 4.88405 4.97558 5.10880 5.16262 5.24730 5.32646 5.36499 5.62762 5.70581 5.81629 5.88467 5.92719 6.15062 6.24218 7.07378 7.21480 7.54425 7.54953 7.96980 8.00473 8.05000 8.59470 9.16617 9.52352 10.03688 10.74502 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.065175 B = 0.001784 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.510101 B =15691.276283 C =15984.115773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.120 3.880 16 N -0.729 5.729 17 C 0.512 3.488 18 O -0.522 6.522 19 C -0.061 4.061 20 C 0.021 3.979 21 C -0.229 4.229 22 C -0.063 4.063 23 O 0.105 5.895 24 N -0.336 5.336 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.353 0.647 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.172 0.828 38 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 -28.898 1.479 29.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.003 4.003 16 N -0.382 5.382 17 C 0.297 3.703 18 O -0.397 6.397 19 C -0.102 4.102 20 C -0.139 4.139 21 C -0.251 4.251 22 C -0.144 4.144 23 O 0.035 5.965 24 N -0.036 5.036 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.172 0.828 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.234 0.766 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.189 0.811 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.564 -27.990 1.056 28.054 hybrid contribution -1.620 0.533 -0.014 1.706 sum -3.184 -27.458 1.042 27.661 Atomic orbital electron populations 1.69620 1.05949 1.28069 1.50691 1.25270 0.95649 0.99755 0.97294 0.85789 0.79744 0.81058 0.77697 1.19187 1.20762 1.20730 1.19772 0.93448 0.82199 1.47459 0.87813 1.41858 1.09195 1.04596 1.64357 1.19778 0.88400 0.84700 0.84623 1.90537 1.13730 1.87015 1.55284 1.21673 0.94214 0.90808 1.01332 1.59941 1.18852 0.99462 1.51662 1.22075 0.95527 0.89413 1.01005 1.21290 0.94968 0.80571 1.03504 1.45849 1.10293 1.05847 1.76177 1.20282 0.88105 0.85195 0.76735 1.90788 1.13742 1.87342 1.47809 1.19977 0.95762 0.88367 1.06081 1.22866 0.97897 0.98661 0.94471 1.22692 1.02218 0.96743 1.03420 1.26018 0.96866 1.01048 0.90490 1.84888 1.45613 1.28442 1.37535 1.73912 1.05722 1.01343 1.22630 0.91922 0.77459 0.93694 0.89452 0.82769 0.94899 0.90438 0.90187 0.91301 0.76572 0.86486 0.86886 0.81052 0.76734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 11 O -0.58 -15.96 15.78 5.55 0.09 -15.88 16 12 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 13 N -0.67 -10.56 6.13 -115.05 -0.70 -11.27 16 14 C 0.05 0.56 5.80 -3.83 -0.02 0.54 16 15 C 0.12 1.38 5.93 -4.04 -0.02 1.36 16 16 N -0.73 -6.43 5.56 -60.29 -0.33 -6.76 16 17 C 0.51 5.61 7.82 -10.98 -0.09 5.52 16 18 O -0.52 -8.46 15.59 5.56 0.09 -8.38 16 19 C -0.06 -0.43 6.30 -29.04 -0.18 -0.61 16 20 C 0.02 0.20 6.10 -82.10 -0.50 -0.30 16 21 C -0.23 -1.51 11.12 -39.38 -0.44 -1.95 16 22 C -0.06 -0.38 12.30 29.74 0.37 -0.01 16 23 O 0.11 1.05 11.20 17.19 0.19 1.25 16 24 N -0.34 -4.13 11.46 33.42 0.38 -3.75 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.35 5.85 8.43 -39.29 -0.33 5.52 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.40 2.09 8.47 -40.82 -0.35 1.74 16 35 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.17 0.59 8.06 -52.48 -0.42 0.16 16 38 H 0.22 0.27 8.06 -52.49 -0.42 -0.15 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -37.57 340.98 -5.49 -43.07 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -4.74 Total: 10.88 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -1.25 Total: 7.67 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.01 Total: -59.83 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.37 Total: -23.01 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.57 -5.49 -43.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125104399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.222 kcal (2) G-P(sol) polarization free energy of solvation -37.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds