Wall clock time and date at job start Tue Mar 31 2020 04:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 117.00656 * 2 1 4 4 C 1.38734 * 120.02603 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.97120 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03175 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.97206 * 179.97438 * 6 5 4 8 8 C 1.38432 * 120.05577 * 359.78943 * 6 5 4 9 9 C 1.38172 * 120.03031 * 0.46314 * 8 6 5 10 10 C 1.50703 * 120.01277 * 179.79239 * 9 8 6 11 11 C 1.50701 * 109.47064 * 264.72240 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 N 1.46500 * 109.47473 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00253 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99879 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00059 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99776 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47283 * 90.00278 * 21 19 17 23 23 H 1.48500 * 109.47205 * 210.00359 * 21 19 17 24 24 H 1.48501 * 109.47099 * 330.00400 * 21 19 17 25 25 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47039 * 299.99874 * 1 2 3 27 27 H 1.08996 * 109.47161 * 59.99848 * 1 2 3 28 28 H 1.08004 * 120.01233 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.98847 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.98211 * 180.23340 * 8 6 5 31 31 H 1.09002 * 109.47152 * 144.72333 * 10 9 8 32 32 H 1.09001 * 109.46980 * 24.72433 * 10 9 8 33 33 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 35 35 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 36 36 H 1.09001 * 109.47289 * 299.99909 * 15 14 13 37 37 H 1.09002 * 109.47153 * 59.99993 * 15 14 13 38 38 H 0.97003 * 119.99983 * 359.97438 * 16 15 14 39 39 H 0.97001 * 119.99359 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9197 3.6051 0.0011 6 6 3.3027 3.6769 0.0016 7 9 3.9161 4.8806 0.0016 8 6 4.0572 2.5162 0.0060 9 6 3.4311 1.2845 0.0002 10 6 4.2529 0.0212 0.0003 11 6 4.4231 -0.4674 -1.4151 12 8 3.9264 0.1497 -2.3335 13 7 5.1281 -1.5896 -1.6604 14 6 5.2940 -2.0642 -3.0364 15 6 6.1282 -3.3468 -3.0364 16 7 6.2946 -3.8212 -4.4124 17 6 7.0110 -4.9613 -4.6617 18 1 7.4530 -5.5109 -3.8438 19 6 7.1683 -5.4110 -5.9655 20 7 6.6292 -4.7414 -6.9621 21 14 8.1449 -6.9666 -6.3055 22 1 7.2345 -8.1395 -6.2743 23 1 8.7810 -6.8692 -7.6438 24 1 9.1957 -7.1280 -5.2686 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.2127 2.3195 0.0005 29 1 1.3323 4.5114 0.0011 30 1 5.1356 2.5736 0.0102 31 1 3.7453 -0.7424 0.5897 32 1 5.2317 0.2246 0.4347 33 1 5.5256 -2.0829 -0.9259 34 1 4.3153 -2.2678 -3.4711 35 1 5.8015 -1.3003 -3.6256 36 1 7.1069 -3.1437 -2.6016 37 1 5.6203 -4.1105 -2.4473 38 1 5.8974 -3.3277 -5.1470 39 1 6.7395 -5.0555 -7.8732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135600567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:31 Heat of formation + Delta-G solvation = -84.023475 kcal Electronic energy + Delta-G solvation = -22763.558524 eV Core-core repulsion = 19007.416765 eV Total energy + Delta-G solvation = -3756.141760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.98889 -40.67054 -39.25748 -37.46747 -35.65214 -33.78941 -33.19687 -31.22064 -30.12669 -28.78977 -27.55896 -26.85139 -23.68858 -22.66734 -22.22420 -21.41534 -20.24150 -18.35371 -17.48149 -17.28615 -17.15272 -16.92910 -15.98851 -15.58080 -15.47277 -15.37316 -14.94517 -14.74869 -14.53361 -14.10640 -13.64958 -13.53356 -13.25318 -13.13870 -13.02249 -12.82483 -12.50098 -12.16984 -11.99394 -11.34479 -11.19352 -11.13386 -11.09254 -10.81295 -10.79126 -10.11874 -9.89083 -9.71571 -9.25354 -8.96562 -8.78374 -8.28915 -6.98733 -5.79073 -3.09739 0.85258 0.98618 2.80267 2.96491 3.12981 3.42592 3.46338 3.49328 3.54347 4.03839 4.28646 4.40120 4.58621 4.68810 4.77287 4.86903 4.93923 5.01187 5.10259 5.15918 5.21983 5.39849 5.51078 5.54775 5.63414 5.80255 5.81649 5.85004 5.98592 6.03159 6.17907 6.44421 6.52747 6.72639 6.78250 7.04413 7.66107 7.67505 8.37799 8.40398 9.49794 10.04968 10.39629 11.43580 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.002509 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.072905 B =11157.189414 C =11665.764280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.136 3.864 4 C -0.181 4.181 5 C -0.114 4.114 6 C 0.060 3.940 7 F -0.142 7.142 8 C -0.102 4.102 9 C -0.067 4.067 10 C -0.095 4.095 11 C 0.515 3.485 12 O -0.534 6.534 13 N -0.724 5.724 14 C 0.112 3.888 15 C 0.145 3.855 16 N -0.730 5.730 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.399 0.601 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.386 0.614 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 14.750 20.424 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.091 3.909 4 C -0.200 4.200 5 C -0.133 4.133 6 C 0.041 3.959 7 F -0.121 7.121 8 C -0.121 4.121 9 C -0.068 4.068 10 C -0.135 4.135 11 C 0.300 3.700 12 O -0.410 6.410 13 N -0.376 5.376 14 C -0.012 4.012 15 C 0.017 3.983 16 N -0.375 5.375 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.160 0.840 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.233 0.767 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.220 0.780 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.668 14.887 19.747 27.344 hybrid contribution 0.414 -0.578 -0.234 0.748 sum -11.254 14.310 19.512 26.686 Atomic orbital electron populations 1.23103 0.78116 1.04332 1.01311 1.86102 1.21534 1.26248 1.88229 1.18762 0.91594 0.84593 0.95993 1.21026 1.00361 0.91280 1.07326 1.20887 0.92690 0.98664 1.01017 1.17453 0.90807 0.80525 1.07138 1.91489 1.83319 1.42884 1.94379 1.20824 1.00707 0.90060 1.00497 1.18415 0.90303 0.94156 1.03922 1.20513 1.01327 0.95896 0.95788 1.20351 0.78310 0.80598 0.90756 1.90725 1.47767 1.56330 1.46228 1.45905 1.54798 1.26844 1.10084 1.21553 1.00967 0.96988 0.81683 1.20757 0.96025 0.91878 0.89666 1.42202 1.64321 1.29753 1.01240 1.19195 1.25391 1.00619 0.92257 0.91029 1.24785 1.01167 0.99354 0.95587 1.69673 1.49068 1.40448 0.98715 0.86146 0.79517 0.82916 0.77312 1.21635 1.21691 1.20703 0.87966 0.92628 0.92412 0.84452 0.84554 0.84049 0.87237 0.87723 0.76692 0.91406 0.91385 0.95810 0.95807 0.78012 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.33 9.63 -19.56 -0.19 -3.52 16 3 C 0.14 1.52 6.66 -39.24 -0.26 1.26 16 4 C -0.18 -1.70 9.04 -39.44 -0.36 -2.05 16 5 C -0.11 -1.08 10.02 -39.54 -0.40 -1.48 16 6 C 0.06 0.66 7.30 -39.42 -0.29 0.37 16 7 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 8 C -0.10 -1.11 9.65 -39.53 -0.38 -1.49 16 9 C -0.07 -0.76 4.39 -104.48 -0.46 -1.21 16 10 C -0.10 -0.95 5.55 -29.03 -0.16 -1.11 16 11 C 0.51 7.35 7.82 -10.98 -0.09 7.26 16 12 O -0.53 -10.03 16.03 5.56 0.09 -9.94 16 13 N -0.72 -9.86 5.56 -60.30 -0.33 -10.19 16 14 C 0.11 1.95 5.79 -4.04 -0.02 1.93 16 15 C 0.14 2.85 6.37 -4.04 -0.03 2.83 16 16 N -0.73 -18.73 5.60 -59.91 -0.34 -19.07 16 17 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 21 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 27 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.14 0.92 6.30 -52.48 -0.33 0.59 16 29 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.11 0.93 7.69 -51.93 -0.40 0.53 16 32 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 33 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.39 10.51 7.67 -40.82 -0.31 10.19 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -35.24 342.38 -6.67 -41.91 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.11 Total: 7.62 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.69 Total: 0.03 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.05 Total: -56.99 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.10 Total: -13.46 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.24 -6.67 -41.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135600567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.117 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds