Wall clock time and date at job start Tue Mar 31 2020 04:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 117.00656 * 2 1 4 4 C 1.38734 * 120.02603 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.97120 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03175 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.97206 * 179.97438 * 6 5 4 8 8 C 1.38432 * 120.05577 * 359.78943 * 6 5 4 9 9 C 1.38172 * 120.03031 * 0.46314 * 8 6 5 10 10 C 1.50703 * 120.01277 * 179.79239 * 9 8 6 11 11 C 1.50701 * 109.47064 * 264.72240 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 N 1.46500 * 109.47473 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00253 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99879 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00059 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99776 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47283 * 90.00278 * 21 19 17 23 23 H 1.48500 * 109.47205 * 210.00359 * 21 19 17 24 24 H 1.48501 * 109.47099 * 330.00400 * 21 19 17 25 25 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47039 * 299.99874 * 1 2 3 27 27 H 1.08996 * 109.47161 * 59.99848 * 1 2 3 28 28 H 1.08004 * 120.01233 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.98847 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.98211 * 180.23340 * 8 6 5 31 31 H 1.09002 * 109.47152 * 144.72333 * 10 9 8 32 32 H 1.09001 * 109.46980 * 24.72433 * 10 9 8 33 33 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 35 35 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 36 36 H 1.09001 * 109.47289 * 299.99909 * 15 14 13 37 37 H 1.09002 * 109.47153 * 59.99993 * 15 14 13 38 38 H 0.97003 * 119.99983 * 359.97438 * 16 15 14 39 39 H 0.97001 * 119.99359 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9197 3.6051 0.0011 6 6 3.3027 3.6769 0.0016 7 9 3.9161 4.8806 0.0016 8 6 4.0572 2.5162 0.0060 9 6 3.4311 1.2845 0.0002 10 6 4.2529 0.0212 0.0003 11 6 4.4231 -0.4674 -1.4151 12 8 3.9264 0.1497 -2.3335 13 7 5.1281 -1.5896 -1.6604 14 6 5.2940 -2.0642 -3.0364 15 6 6.1282 -3.3468 -3.0364 16 7 6.2946 -3.8212 -4.4124 17 6 7.0110 -4.9613 -4.6617 18 1 7.4530 -5.5109 -3.8438 19 6 7.1683 -5.4110 -5.9655 20 7 6.6292 -4.7414 -6.9621 21 14 8.1449 -6.9666 -6.3055 22 1 7.2345 -8.1395 -6.2743 23 1 8.7810 -6.8692 -7.6438 24 1 9.1957 -7.1280 -5.2686 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.2127 2.3195 0.0005 29 1 1.3323 4.5114 0.0011 30 1 5.1356 2.5736 0.0102 31 1 3.7453 -0.7424 0.5897 32 1 5.2317 0.2246 0.4347 33 1 5.5256 -2.0829 -0.9259 34 1 4.3153 -2.2678 -3.4711 35 1 5.8015 -1.3003 -3.6256 36 1 7.1069 -3.1437 -2.6016 37 1 5.6203 -4.1105 -2.4473 38 1 5.8974 -3.3277 -5.1470 39 1 6.7395 -5.0555 -7.8732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135600567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:31 Heat of formation + Delta-G solvation = -109.297786 kcal Electronic energy + Delta-G solvation = -22764.654501 eV Core-core repulsion = 19007.416765 eV Total energy + Delta-G solvation = -3757.237736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.82457 -41.48543 -40.35341 -38.21759 -37.28034 -35.45066 -34.05209 -33.09158 -30.89647 -30.02209 -28.49999 -27.84617 -25.53968 -23.53588 -23.22512 -22.84328 -21.36979 -19.35101 -19.04122 -18.20800 -18.04574 -18.01033 -16.89102 -16.69282 -16.64263 -16.46134 -16.35250 -15.65972 -15.45847 -15.35221 -15.26685 -15.00227 -14.48905 -14.29960 -14.07584 -13.71347 -13.22686 -13.15631 -13.03785 -12.81338 -12.72261 -12.56486 -12.49876 -12.08052 -11.87614 -11.86148 -11.80301 -11.01297 -10.98751 -10.10508 -10.04232 -9.06595 -9.06350 -7.96785 -5.28300 0.09728 0.20474 1.48658 1.51191 1.59651 1.68971 2.11099 2.31427 2.55029 2.65763 3.26786 3.37538 3.55009 3.71228 3.90245 4.03687 4.07838 4.13180 4.22256 4.23099 4.35785 4.40733 4.42562 4.47361 4.59794 4.70781 4.74178 4.87407 5.06288 5.08805 5.11169 5.14719 5.27517 5.41893 5.50081 5.70467 6.24082 6.34804 6.60307 7.29889 7.30589 8.02202 8.25037 9.27073 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.002509 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.072905 B =11157.189414 C =11665.764280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.123 3.877 4 C -0.182 4.182 5 C -0.112 4.112 6 C 0.038 3.962 7 F -0.150 7.150 8 C -0.109 4.109 9 C -0.089 4.089 10 C -0.084 4.084 11 C 0.513 3.487 12 O -0.584 6.584 13 N -0.712 5.712 14 C 0.129 3.871 15 C 0.149 3.851 16 N -0.749 5.749 17 C -0.248 4.248 18 H 0.084 0.916 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.980 3.020 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.265 1.265 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.164 0.836 29 H 0.159 0.841 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.419 0.581 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.373 0.627 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.583 14.251 22.579 29.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.077 3.923 4 C -0.201 4.201 5 C -0.131 4.131 6 C 0.019 3.981 7 F -0.128 7.128 8 C -0.128 4.128 9 C -0.090 4.090 10 C -0.123 4.123 11 C 0.301 3.699 12 O -0.463 6.463 13 N -0.365 5.365 14 C 0.004 3.996 15 C 0.023 3.977 16 N -0.392 5.392 17 C -0.379 4.379 18 H 0.102 0.898 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.808 3.192 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.190 1.190 25 H 0.132 0.868 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.181 0.819 29 H 0.177 0.823 30 H 0.170 0.830 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.256 0.744 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.205 0.795 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.723 14.374 21.995 28.772 hybrid contribution 0.353 -0.376 -0.831 0.978 sum -11.370 13.997 21.164 27.805 Atomic orbital electron populations 1.23370 0.76376 1.05598 1.02407 1.86064 1.23472 1.26337 1.88209 1.19046 0.91984 0.85300 0.95970 1.21341 1.01686 0.90642 1.06426 1.21194 0.92357 0.99739 0.99815 1.17724 0.91654 0.80393 1.08361 1.91464 1.83543 1.43259 1.94574 1.21020 1.01454 0.90069 1.00272 1.18644 0.90880 0.94647 1.04829 1.20537 1.03295 0.95816 0.92684 1.21149 0.76902 0.79756 0.92135 1.90706 1.49709 1.57744 1.48187 1.45716 1.54802 1.27008 1.08963 1.21095 0.99215 0.95589 0.83698 1.20855 0.97105 0.92839 0.86935 1.42456 1.64098 1.29388 1.03250 1.19665 1.24577 1.01018 0.92644 0.89813 1.25691 1.02923 1.02860 0.95573 1.69846 1.51117 1.42425 0.98852 0.85046 0.78268 0.78881 0.76970 1.21242 1.22345 1.18958 0.86759 0.90426 0.92352 0.81898 0.82341 0.82965 0.85311 0.84375 0.74422 0.93326 0.93180 0.94332 0.94387 0.79546 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.63 9.63 -92.92 -0.89 -7.53 16 3 C 0.12 2.60 6.66 22.49 0.15 2.75 16 4 C -0.18 -3.13 9.04 22.36 0.20 -2.93 16 5 C -0.11 -1.99 10.02 22.30 0.22 -1.77 16 6 C 0.04 0.81 7.30 22.37 0.16 0.97 16 7 F -0.15 -3.41 17.27 44.97 0.78 -2.63 16 8 C -0.11 -2.29 9.65 22.30 0.22 -2.08 16 9 C -0.09 -1.91 4.39 -19.77 -0.09 -1.99 16 10 C -0.08 -1.51 5.55 29.10 0.16 -1.34 16 11 C 0.51 14.12 7.82 87.66 0.69 14.81 16 12 O -0.58 -22.11 16.03 -3.03 -0.05 -22.16 16 13 N -0.71 -18.33 5.56 -463.06 -2.57 -20.90 16 14 C 0.13 4.49 5.79 86.38 0.50 4.99 16 15 C 0.15 5.71 6.37 86.38 0.55 6.26 16 16 N -0.75 -38.45 5.60 -343.45 -1.92 -40.37 16 17 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 20 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 21 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 0.57 7.66 -2.39 -0.02 0.55 16 27 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 28 H 0.16 1.79 6.30 -2.91 -0.02 1.77 16 29 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.13 1.83 7.69 -2.39 -0.02 1.81 16 32 H 0.14 1.52 8.05 -2.39 -0.02 1.50 16 33 H 0.42 7.54 8.47 -92.71 -0.79 6.75 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 39 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -76.87 342.38 2.42 -74.44 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.41 Total: 27.41 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.18 Total: 4.03 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -4.21 Total: -121.42 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.94 Total: -29.68 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -76.87 2.42 -74.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135600567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.857 kcal (2) G-P(sol) polarization free energy of solvation -76.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds