Wall clock time and date at job start Tue Mar 31 2020 03:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00355 * 2 1 4 4 H 1.48503 * 109.46783 * 269.99807 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99444 * 3 2 1 6 6 H 1.48498 * 109.47166 * 149.99411 * 3 2 1 7 7 C 1.38816 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99972 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99899 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46894 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46983 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.46992 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99737 * 179.97438 * 13 12 11 15 15 O 1.21283 * 119.99998 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99838 * 179.97438 * 14 13 12 17 17 O 1.42895 * 109.46892 * 179.97438 * 16 14 13 18 18 C 1.35951 * 116.99758 * 179.97438 * 17 16 14 19 19 C 1.38708 * 120.03040 * 0.28885 * 18 17 16 20 20 C 1.38147 * 119.96935 * 180.25012 * 19 18 17 21 21 C 1.38455 * 120.02958 * 359.46222 * 20 19 18 22 22 F 1.35101 * 119.97206 * 180.29906 * 21 20 19 23 23 C 1.38452 * 120.06193 * 0.28172 * 21 20 19 24 24 C 1.38156 * 120.03063 * 359.97438 * 23 21 20 25 25 H 0.96999 * 119.99337 * 0.02562 * 1 2 3 26 26 H 0.96997 * 119.99904 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.47295 * 60.00493 * 10 9 7 28 28 H 1.08995 * 109.47062 * 299.99980 * 10 9 7 29 29 H 1.08997 * 109.47251 * 60.00221 * 11 10 9 30 30 H 1.08995 * 109.47343 * 299.99922 * 11 10 9 31 31 H 1.08997 * 109.47025 * 59.99986 * 12 11 10 32 32 H 1.09003 * 109.46790 * 299.99789 * 12 11 10 33 33 H 0.96993 * 120.00024 * 359.97438 * 13 12 11 34 34 H 1.09005 * 109.46403 * 60.00348 * 16 14 13 35 35 H 1.08995 * 109.47035 * 300.00415 * 16 14 13 36 36 H 1.07998 * 120.01328 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.98838 * 179.74746 * 20 19 18 38 38 H 1.07997 * 119.98751 * 179.97438 * 23 21 20 39 39 H 1.07999 * 120.02057 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 6 1.8287 -6.1448 0.0018 13 7 0.8766 -7.2583 0.0018 14 6 1.3259 -8.5290 0.0018 15 8 2.5183 -8.7506 0.0014 16 6 0.3466 -9.6744 0.0024 17 8 1.0611 -10.9119 0.0017 18 6 0.3206 -12.0521 0.0026 19 6 -1.0646 -11.9802 -0.0018 20 6 -1.8158 -13.1395 0.0044 21 6 -1.1867 -14.3729 0.0038 22 9 -1.9225 -15.5059 0.0037 23 6 0.1959 -14.4461 0.0029 24 6 0.9497 -13.2883 0.0020 25 1 -0.4849 0.8401 -0.0004 26 1 0.3556 -2.3880 0.0005 27 1 2.6847 -3.7146 0.8906 28 1 2.6846 -3.7146 -0.8894 29 1 0.4368 -4.7622 -0.8886 30 1 0.4374 -4.7618 0.8913 31 1 2.4554 -6.2021 0.8918 32 1 2.4553 -6.2029 -0.8882 33 1 -0.0770 -7.0810 0.0018 34 1 -0.2804 -9.6167 -0.8874 35 1 -0.2797 -9.6165 0.8926 36 1 -1.5556 -11.0183 -0.0065 37 1 -2.8944 -13.0839 0.0050 38 1 0.6854 -15.4088 0.0028 39 1 2.0281 -13.3457 0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175795284.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:12 Heat of formation + Delta-G solvation = -84.980726 kcal Electronic energy + Delta-G solvation = -21672.418022 eV Core-core repulsion = 17916.234753 eV Total energy + Delta-G solvation = -3756.183269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.21867 -40.79885 -39.57828 -37.54558 -36.08203 -34.44791 -32.19706 -31.78085 -30.54524 -29.70248 -28.23630 -25.17770 -23.66477 -22.87647 -22.39134 -21.33780 -20.52633 -18.92210 -17.84881 -17.73422 -17.02595 -16.85054 -16.49774 -16.00557 -15.93979 -15.47613 -15.15521 -14.76009 -14.35883 -14.29999 -14.11511 -13.59693 -13.47130 -13.31076 -13.05313 -12.92068 -12.73722 -12.39878 -11.73160 -11.40193 -11.39225 -11.02568 -10.96676 -10.82761 -10.67960 -10.15949 -10.00722 -9.74040 -9.69638 -9.23615 -8.91569 -8.58392 -6.97556 -5.80895 -3.09957 0.65121 0.73326 2.17897 2.32455 3.08064 3.31555 3.41820 3.47107 3.48744 3.85613 4.12599 4.25800 4.35879 4.50519 4.55796 4.58052 4.64350 4.81979 5.01931 5.07970 5.22423 5.37112 5.53727 5.53770 5.61287 5.67208 5.70926 5.87060 5.97906 6.11602 6.17527 6.25987 6.28463 6.72912 6.77142 6.79916 7.24664 7.67031 7.95004 8.38078 9.49351 10.05821 10.40394 11.42061 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.054434 B = 0.001739 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.261375 B =16100.388899 C =16583.598007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.124 3.876 13 N -0.722 5.722 14 C 0.513 3.487 15 O -0.518 6.518 16 C 0.039 3.961 17 O -0.285 6.285 18 C 0.123 3.877 19 C -0.183 4.183 20 C -0.111 4.111 21 C 0.057 3.943 22 F -0.142 7.142 23 C -0.112 4.112 24 C -0.120 4.120 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.402 0.598 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 -28.899 0.027 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C 0.001 3.999 13 N -0.376 5.376 14 C 0.297 3.703 15 O -0.392 6.392 16 C -0.040 4.040 17 O -0.197 6.197 18 C 0.077 3.923 19 C -0.202 4.202 20 C -0.130 4.130 21 C 0.038 3.962 22 F -0.120 7.120 23 C -0.130 4.130 24 C -0.138 4.138 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.237 0.763 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.655 -28.942 0.035 29.172 hybrid contribution -0.820 0.959 -0.011 1.262 sum -4.475 -27.982 0.024 28.338 Atomic orbital electron populations 1.69660 1.05145 1.25716 1.57784 1.24757 0.95567 0.97785 1.02916 0.86158 0.78663 0.83637 0.77555 1.21667 1.21735 1.20700 1.19253 0.91134 0.84107 1.42756 0.91056 1.42327 1.05848 0.99967 1.89651 1.20523 0.93251 0.85157 0.98306 1.21952 0.99627 0.93182 1.02824 1.21423 0.91569 0.84154 1.02802 1.45908 1.11071 1.05171 1.75437 1.19925 0.89330 0.83617 0.77476 1.90773 1.16374 1.84399 1.47700 1.22550 0.94602 0.82725 1.04108 1.86195 1.33802 1.11413 1.88299 1.19087 0.89916 0.86703 0.96584 1.21157 0.92465 0.99541 1.07050 1.20952 1.01018 0.90550 1.00474 1.17602 0.89388 0.82255 1.07001 1.91499 1.77067 1.49156 1.94318 1.20988 0.91803 0.99502 1.00757 1.20331 1.01213 0.88559 1.03716 0.93492 0.78305 0.95991 0.95985 0.91184 0.91188 0.91050 0.91058 0.76330 0.88664 0.88653 0.84260 0.84301 0.83906 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.26 5.60 -59.91 -0.34 -18.59 16 10 C 0.16 3.00 6.26 -4.04 -0.03 2.97 16 11 C -0.14 -1.95 5.44 -26.73 -0.15 -2.09 16 12 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 13 N -0.72 -7.11 5.56 -60.29 -0.33 -7.44 16 14 C 0.51 5.80 7.91 -10.98 -0.09 5.72 16 15 O -0.52 -8.39 16.50 -14.36 -0.24 -8.63 16 16 C 0.04 0.29 5.22 36.01 0.19 0.48 16 17 O -0.29 -2.94 9.67 -39.50 -0.38 -3.32 16 18 C 0.12 1.05 6.69 -39.23 -0.26 0.79 16 19 C -0.18 -1.22 9.04 -39.44 -0.36 -1.58 16 20 C -0.11 -0.75 10.02 -39.53 -0.40 -1.15 16 21 C 0.06 0.45 7.30 -39.42 -0.29 0.16 16 22 F -0.14 -1.24 17.27 2.25 0.04 -1.20 16 23 C -0.11 -0.78 10.02 -39.53 -0.40 -1.18 16 24 C -0.12 -0.93 9.99 -39.44 -0.39 -1.32 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.38 9.90 7.67 -40.82 -0.31 9.58 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 2.70 8.47 -40.82 -0.35 2.35 16 34 H 0.10 0.46 7.65 -51.93 -0.40 0.07 16 35 H 0.10 0.47 7.67 -51.93 -0.40 0.07 16 36 H 0.14 0.58 6.30 -52.49 -0.33 0.25 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -34.74 344.49 -7.93 -42.66 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.14 Total: 4.40 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.43 Total: -3.08 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.05 Total: -53.25 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.62 Total: -11.95 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.74 -7.93 -42.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175795284.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.319 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds