Wall clock time and date at job start Tue Mar 31 2020 04:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34755 * 116.99858 * 2 1 4 4 O 1.21518 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.47378 * 119.99809 * 180.02562 * 3 2 1 6 6 C 1.36669 * 125.78020 * 180.02562 * 5 3 2 7 7 N 1.34784 * 106.83742 * 179.73052 * 6 5 3 8 8 C 1.46501 * 126.58666 * 180.25974 * 7 6 5 9 9 C 1.50701 * 109.47116 * 125.00361 * 8 7 6 10 10 O 1.21288 * 119.99626 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00261 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00267 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47056 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.46989 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47270 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00044 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00152 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00430 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00190 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47405 * 89.99915 * 19 17 15 21 21 H 1.48503 * 109.47579 * 210.00421 * 19 17 15 22 22 H 1.48501 * 109.47332 * 330.00159 * 19 17 15 23 23 N 1.40210 * 106.82726 * 0.26571 * 7 6 5 24 24 N 1.28756 * 108.38353 * 359.97438 * 23 7 6 25 25 H 1.09002 * 109.46608 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46926 * 299.99467 * 1 2 3 27 27 H 1.08993 * 109.47352 * 59.99998 * 1 2 3 28 28 H 1.08002 * 126.58419 * 359.97438 * 6 5 3 29 29 H 1.08994 * 109.47030 * 245.00335 * 8 7 6 30 30 H 1.09000 * 109.47310 * 5.00335 * 8 7 6 31 31 H 0.97006 * 120.00114 * 0.02562 * 11 9 8 32 32 H 1.08999 * 109.46762 * 300.00364 * 12 11 9 33 33 H 1.09000 * 109.46646 * 60.00215 * 12 11 9 34 34 H 1.08999 * 109.47389 * 299.99683 * 13 12 11 35 35 H 1.09000 * 109.47471 * 59.99860 * 13 12 11 36 36 H 1.08991 * 109.47551 * 300.00205 * 14 13 12 37 37 H 1.09009 * 109.47331 * 60.00206 * 14 13 12 38 38 H 0.97000 * 120.00839 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5356 1.2778 -0.0006 6 6 4.2755 2.4269 -0.0001 7 7 5.5715 2.0566 0.0051 8 6 6.7342 2.9479 0.0129 9 6 7.6232 2.6037 1.1801 10 8 7.3159 1.7024 1.9313 11 7 8.7600 3.2968 1.3887 12 6 9.6245 2.9619 2.5232 13 6 10.8387 3.8927 2.5313 14 6 11.7411 3.5434 3.7164 15 6 12.9375 4.4598 3.7241 16 1 13.0437 5.2155 2.9599 17 6 13.8968 4.3328 4.7061 18 7 14.9411 5.1322 4.7126 19 14 13.7135 3.0252 6.0274 20 1 14.3656 1.7698 5.5755 21 1 14.3575 3.4941 7.2807 22 1 12.2716 2.7720 6.2767 23 7 5.5932 0.6547 0.0017 24 7 4.3777 0.2298 -0.0047 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.8949 3.4376 0.0003 29 1 7.2912 2.8265 -0.9161 30 1 6.3994 3.9812 0.1035 31 1 9.0059 4.0175 0.7878 32 1 9.0678 3.0832 3.4524 33 1 9.9590 1.9285 2.4323 34 1 11.3955 3.7718 1.6021 35 1 10.5038 4.9260 2.6223 36 1 11.1842 3.6646 4.6454 37 1 12.0761 2.5100 3.6258 38 1 15.6160 5.0431 5.4036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319321962.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:09 Heat of formation + Delta-G solvation = -55.196347 kcal Electronic energy + Delta-G solvation = -22209.296549 eV Core-core repulsion = 18474.324789 eV Total energy + Delta-G solvation = -3734.971760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.38950 -41.23889 -40.72876 -37.56506 -37.10321 -35.68250 -35.19282 -33.37213 -32.33293 -30.42733 -28.84273 -28.21722 -24.98654 -24.90054 -23.47716 -22.30309 -22.16426 -21.34452 -19.46737 -18.93424 -18.39958 -18.15287 -17.60325 -17.44819 -16.91967 -16.64494 -16.41967 -16.15291 -15.70673 -15.61603 -14.86072 -14.78951 -14.71312 -14.26793 -14.02097 -13.81967 -13.55205 -13.24657 -12.91514 -12.74687 -12.70861 -12.42241 -11.98114 -11.88306 -11.84276 -11.82543 -11.77352 -11.59536 -11.33187 -10.94173 -10.76744 -10.49585 -10.16697 -8.29977 -6.33418 -0.04741 0.37243 0.83940 1.35660 1.37766 1.44915 1.48399 1.64627 1.87542 2.06561 2.35074 3.06085 3.10150 3.39482 3.59412 3.79965 3.80182 4.08686 4.10402 4.20436 4.29417 4.32395 4.36742 4.49958 4.54337 4.74396 4.88551 4.89808 5.04639 5.19228 5.21980 5.33130 5.50090 5.56296 5.64953 6.26844 6.45829 6.48129 6.75191 6.87130 7.14083 7.31673 8.86112 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.041680 B = 0.002078 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.617741 B =13469.480136 C =13754.625905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.563 3.437 4 O -0.519 6.519 5 C -0.122 4.122 6 C 0.134 3.866 7 N -0.344 5.344 8 C 0.102 3.898 9 C 0.493 3.507 10 O -0.574 6.574 11 N -0.705 5.705 12 C 0.128 3.872 13 C -0.099 4.099 14 C -0.015 4.015 15 C -0.529 4.529 16 H 0.041 0.959 17 C 0.006 3.994 18 N -0.949 5.949 19 Si 0.944 3.056 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.249 1.249 23 N -0.068 5.068 24 N -0.217 5.217 25 H 0.129 0.871 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.258 0.742 29 H 0.168 0.832 30 H 0.197 0.803 31 H 0.423 0.577 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.019 0.981 37 H 0.016 0.984 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.356 -3.159 -14.312 31.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.406 3.594 4 O -0.408 6.408 5 C -0.259 4.259 6 C -0.024 4.024 7 N -0.127 5.127 8 C -0.021 4.021 9 C 0.278 3.722 10 O -0.453 6.453 11 N -0.358 5.358 12 C 0.004 3.996 13 C -0.137 4.137 14 C -0.053 4.053 15 C -0.567 4.567 16 H 0.060 0.940 17 C -0.191 4.191 18 N -0.590 5.590 19 Si 0.768 3.232 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.173 1.173 23 N -0.049 5.049 24 N -0.092 5.092 25 H 0.147 0.853 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.274 0.726 29 H 0.186 0.814 30 H 0.214 0.786 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.037 0.963 37 H 0.035 0.965 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.720 -4.691 -13.690 30.387 hybrid contribution 0.114 0.722 0.685 1.002 sum -26.606 -3.968 -13.004 29.879 Atomic orbital electron populations 1.23665 0.73605 1.05975 1.03177 1.86644 1.25681 1.31491 1.83392 1.19430 0.86172 0.81882 0.71907 1.90858 1.65957 1.36156 1.47818 1.20529 0.92780 0.90620 1.21969 1.24023 0.82211 1.02351 0.93772 1.50184 1.07000 1.07345 1.48185 1.22389 0.84175 0.95514 0.99994 1.21024 0.82441 0.82034 0.86723 1.90840 1.73586 1.31950 1.48901 1.45774 1.21901 1.37366 1.30746 1.21280 0.90755 0.98893 0.88686 1.21472 0.94002 0.98891 0.99348 1.19490 0.94247 0.95925 0.95667 1.21471 1.05866 1.17472 1.11868 0.94042 1.25945 0.94728 0.98145 1.00331 1.70046 1.12243 1.40654 1.36015 0.85755 0.79695 0.79340 0.78446 1.19444 1.21121 1.17287 1.82196 1.13015 0.88071 1.21592 1.74792 0.97342 1.27222 1.09836 0.85252 0.91365 0.90949 0.72584 0.81421 0.78628 0.73863 0.92576 0.92794 0.91326 0.91115 0.96273 0.96529 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.36 -7.35 10.57 -56.66 -0.60 -7.95 16 3 C 0.56 12.08 7.96 70.23 0.56 12.64 16 4 O -0.52 -11.50 16.65 19.78 0.33 -11.17 16 5 C -0.12 -2.64 7.02 40.78 0.29 -2.36 16 6 C 0.13 1.79 11.27 83.87 0.95 2.74 16 7 N -0.34 -5.64 3.41 -350.80 -1.20 -6.83 16 8 C 0.10 0.75 7.02 85.63 0.60 1.35 16 9 C 0.49 9.60 7.86 87.66 0.69 10.29 16 10 O -0.57 -18.54 15.73 -3.05 -0.05 -18.59 16 11 N -0.70 -12.55 5.56 -463.06 -2.57 -15.13 16 12 C 0.13 3.50 5.67 86.38 0.49 3.99 16 13 C -0.10 -3.17 5.27 30.59 0.16 -3.01 16 14 C -0.02 -0.66 4.04 29.85 0.12 -0.54 16 15 C -0.53 -28.95 9.66 25.60 0.25 -28.70 16 16 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 17 C 0.01 0.32 5.47 84.65 0.46 0.78 16 18 N -0.95 -58.14 13.96 21.44 0.30 -57.84 16 19 Si 0.94 43.73 27.47 68.60 1.88 45.61 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.25 -10.82 6.54 99.48 0.65 -10.16 16 23 N -0.07 -1.83 12.88 37.02 0.48 -1.35 16 24 N -0.22 -6.03 12.39 -50.04 -0.62 -6.65 16 25 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.26 0.64 8.06 -2.91 -0.02 0.62 16 29 H 0.17 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.20 -0.81 8.08 -2.39 -0.02 -0.83 16 31 H 0.42 4.06 8.47 -92.70 -0.79 3.28 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 37 H 0.02 0.71 7.57 -2.38 -0.02 0.69 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -87.70 342.00 3.97 -83.73 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: 0.25 Total: -2.55 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.76 Total: -1.29 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -3.61 Total: -87.80 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.32 Total: -37.71 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Total: -87.70 3.97 -83.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319321962.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.533 kcal (2) G-P(sol) polarization free energy of solvation -87.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds