Wall clock time and date at job start Tue Mar 31 2020 03:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47451 * 2 1 4 4 O 1.42895 * 109.47169 * 239.99566 * 2 1 3 5 5 C 1.50706 * 109.47164 * 119.99741 * 2 1 3 6 6 C 1.35347 * 126.75303 * 125.29260 * 5 2 1 7 7 N 1.35318 * 106.17619 * 180.12826 * 6 5 2 8 8 C 1.46498 * 125.86726 * 179.90870 * 7 6 5 9 9 C 1.50703 * 109.47026 * 124.71262 * 8 7 6 10 10 O 1.21280 * 119.99782 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99919 * 179.97438 * 9 8 7 12 12 C 1.47572 * 134.49163 * 179.97438 * 11 9 8 13 13 C 1.53951 * 86.11583 * 155.36029 * 12 11 9 14 14 O 1.42897 * 113.74300 * 269.15347 * 13 12 11 15 15 C 1.50705 * 113.74111 * 137.95217 * 13 12 11 16 16 H 1.07995 * 119.99667 * 17.19322 * 15 13 12 17 17 C 1.37876 * 119.99899 * 197.19139 * 15 13 12 18 18 N 1.31516 * 119.99917 * 194.36987 * 17 15 13 19 19 Si 1.86802 * 120.00062 * 14.36608 * 17 15 13 20 20 H 1.48496 * 109.47125 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47124 * 300.00105 * 19 17 15 22 22 H 1.48498 * 109.47140 * 60.00316 * 19 17 15 23 23 C 1.47814 * 134.45384 * 359.86683 * 11 9 8 24 24 N 1.28714 * 108.25615 * 359.63871 * 7 6 5 25 25 N 1.28627 * 110.18539 * 0.23262 * 24 7 6 26 26 H 1.09000 * 109.47092 * 60.00327 * 1 2 3 27 27 H 1.09003 * 109.47176 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46997 * 300.00490 * 1 2 3 29 29 H 0.96700 * 114.00140 * 59.99624 * 4 2 1 30 30 H 1.07998 * 126.91293 * 0.02562 * 6 5 2 31 31 H 1.08993 * 109.46926 * 4.71096 * 8 7 6 32 32 H 1.09003 * 109.46794 * 244.71420 * 8 7 6 33 33 H 1.09001 * 113.77187 * 41.06251 * 12 11 9 34 34 H 1.08998 * 113.77370 * 269.65834 * 12 11 9 35 35 H 0.96694 * 114.00247 * 174.14447 * 14 13 12 36 36 H 0.96994 * 119.99617 * 354.85921 * 18 17 15 37 37 H 1.09002 * 113.76589 * 90.38278 * 23 11 9 38 38 H 1.09000 * 113.83818 * 318.91814 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0324 -0.7104 1.2305 6 6 2.8930 -1.7543 1.2684 7 7 3.0540 -2.0629 2.5761 8 6 3.8998 -3.1347 3.1072 9 6 4.8706 -2.5600 4.1064 10 8 4.8576 -1.3721 4.3504 11 7 5.7533 -3.3663 4.7288 12 6 6.8159 -3.1578 5.7314 13 6 6.6115 -4.6378 6.1024 14 8 5.6481 -4.8438 7.1374 15 6 7.8974 -5.3872 6.3391 16 1 8.8136 -4.8442 6.5182 17 6 7.9041 -6.7659 6.3272 18 7 8.9386 -7.4226 6.8048 19 14 6.4438 -7.7010 5.6326 20 1 6.6963 -9.1607 5.7357 21 1 5.2224 -7.3549 6.4031 22 1 6.2514 -7.3309 4.2074 23 6 6.0436 -4.8148 4.6823 24 7 2.3408 -1.2492 3.2732 25 7 1.7192 -0.4300 2.5005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.7210 -0.2703 -1.9979 30 1 3.3566 -2.2437 0.4247 31 1 4.4516 -3.6004 2.2908 32 1 3.2748 -3.8821 3.5962 33 1 6.5407 -2.4638 6.5255 34 1 7.7930 -2.9444 5.2980 35 1 5.4509 -5.7742 7.3118 36 1 9.7272 -6.9392 7.0966 37 1 6.7936 -5.0889 3.9403 38 1 5.1528 -5.4416 4.6402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321051577.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:12 Heat of formation + Delta-G solvation = 17.793428 kcal Electronic energy + Delta-G solvation = -23711.556406 eV Core-core repulsion = 19979.749720 eV Total energy + Delta-G solvation = -3731.806686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.29912 -39.97140 -38.00648 -37.63115 -34.55722 -34.38001 -32.73345 -32.03938 -30.21154 -29.61272 -27.84925 -25.87614 -24.88532 -24.33987 -22.20831 -21.22502 -20.09136 -18.92112 -18.09159 -17.61248 -17.38191 -17.12729 -16.11895 -15.79668 -15.59841 -15.14718 -15.07580 -14.79332 -14.52186 -14.10548 -13.71027 -13.37668 -12.93251 -12.90429 -12.60714 -12.41373 -12.25388 -12.09781 -11.85506 -11.42265 -11.39355 -10.93516 -10.85228 -10.73735 -10.55141 -10.35083 -10.06604 -9.63970 -9.55705 -9.15368 -9.13924 -8.65236 -8.22143 -6.83627 -4.57950 1.56401 2.12084 2.49220 2.67567 2.98100 3.03626 3.06694 3.28363 3.59835 4.07738 4.18849 4.40349 4.59858 4.68530 4.72744 4.77428 4.80073 4.95540 5.05233 5.28152 5.32574 5.41873 5.52533 5.72395 5.74402 5.81173 5.90460 6.01069 6.02126 6.16267 6.17529 6.48078 6.55871 7.27556 7.42627 7.95743 7.99620 8.23841 8.46710 8.52428 8.58894 9.18198 10.52957 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.032281 B = 0.003254 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.167599 B = 8602.854592 C = 8926.721199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.196 3.804 3 H 0.074 0.926 4 O -0.566 6.566 5 C -0.030 4.030 6 C -0.025 4.025 7 N -0.280 5.280 8 C 0.100 3.900 9 C 0.519 3.481 10 O -0.528 6.528 11 N -0.629 5.629 12 C 0.134 3.866 13 C 0.202 3.798 14 O -0.565 6.565 15 C -0.618 4.618 16 H 0.071 0.929 17 C 0.035 3.965 18 N -0.884 5.884 19 Si 1.040 2.960 20 H -0.277 1.277 21 H -0.279 1.279 22 H -0.273 1.273 23 C 0.050 3.950 24 N -0.047 5.047 25 N -0.265 5.265 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.386 0.614 30 H 0.193 0.807 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.368 0.632 36 H 0.275 0.725 37 H 0.100 0.900 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.061 6.067 -15.515 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.135 3.865 3 H 0.091 0.909 4 O -0.372 6.372 5 C -0.167 4.167 6 C -0.175 4.175 7 N -0.073 5.073 8 C -0.025 4.025 9 C 0.305 3.695 10 O -0.405 6.405 11 N -0.364 5.364 12 C 0.012 3.988 13 C 0.161 3.839 14 O -0.373 6.373 15 C -0.656 4.656 16 H 0.089 0.911 17 C -0.173 4.173 18 N -0.516 5.516 19 Si 0.868 3.132 20 H -0.202 1.202 21 H -0.206 1.206 22 H -0.199 1.199 23 C -0.072 4.072 24 N -0.027 5.027 25 N -0.133 5.133 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.234 0.766 30 H 0.210 0.790 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.218 0.782 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.923 5.954 -13.814 19.831 hybrid contribution 0.921 0.703 -1.306 1.746 sum -12.002 6.657 -15.119 20.419 Atomic orbital electron populations 1.22419 0.94931 1.03143 1.02996 1.19476 0.92734 0.93355 0.80922 0.90854 1.86410 1.77192 1.57824 1.15819 1.21446 1.02086 0.99124 0.94056 1.23303 1.04816 1.01999 0.87359 1.46824 1.31068 1.23949 1.05437 1.21867 0.93195 0.87483 1.00004 1.19697 0.81865 0.86340 0.81608 1.90786 1.71014 1.14787 1.63914 1.50116 1.33666 1.10418 1.42185 1.23287 0.89151 0.98024 0.88313 1.20374 0.88317 0.92587 0.82661 1.86394 1.63013 1.30804 1.57087 1.22174 0.93774 0.93481 1.56199 0.91097 1.25854 1.03009 0.94948 0.93513 1.70799 1.06217 1.39772 1.34812 0.84140 0.74510 0.77512 0.77061 1.20244 1.20590 1.19926 1.24883 0.99565 0.79389 1.03378 1.78466 1.04862 0.99441 1.19948 1.75024 1.19651 1.18921 0.99752 0.91912 0.91818 0.90553 0.76591 0.78992 0.84843 0.85426 0.90519 0.88749 0.78243 0.91427 0.88165 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 9.51 37.16 0.35 -1.08 16 2 C 0.20 1.88 4.13 -27.88 -0.12 1.77 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 O -0.57 -4.56 12.71 -35.23 -0.45 -5.01 16 5 C -0.03 -0.41 6.47 -82.78 -0.54 -0.95 16 6 C -0.02 -0.32 10.92 -17.05 -0.19 -0.51 16 7 N -0.28 -4.25 3.20 -62.44 -0.20 -4.45 16 8 C 0.10 1.31 6.69 -5.19 -0.03 1.27 16 9 C 0.52 9.34 8.07 -10.98 -0.09 9.26 16 10 O -0.53 -11.69 16.40 5.56 0.09 -11.60 16 11 N -0.63 -11.52 3.61 -178.11 -0.64 -12.16 16 12 C 0.13 2.66 8.23 -2.97 -0.02 2.64 16 13 C 0.20 4.28 1.07 -90.83 -0.10 4.18 16 14 O -0.56 -12.36 13.47 -35.23 -0.47 -12.84 16 15 C -0.62 -15.11 9.04 -34.44 -0.31 -15.42 16 16 H 0.07 1.88 8.06 -52.49 -0.42 1.46 16 17 C 0.04 0.87 5.44 -17.82 -0.10 0.78 16 18 N -0.88 -24.04 13.70 55.43 0.76 -23.28 16 19 Si 1.04 20.51 24.56 -169.99 -4.17 16.33 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -4.95 5.81 56.52 0.33 -4.62 16 22 H -0.27 -4.72 6.48 56.52 0.37 -4.35 16 23 C 0.05 0.89 5.39 -2.83 -0.02 0.87 16 24 N -0.05 -0.87 12.13 60.35 0.73 -0.13 16 25 N -0.26 -4.49 12.40 33.29 0.41 -4.08 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.39 1.22 9.08 45.56 0.41 1.64 16 30 H 0.19 1.87 7.94 -52.49 -0.42 1.46 16 31 H 0.13 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 35 H 0.37 7.39 6.07 45.56 0.28 7.66 16 36 H 0.28 7.51 8.73 -40.82 -0.36 7.15 16 37 H 0.10 1.68 7.97 -51.93 -0.41 1.27 16 38 H 0.07 1.07 6.87 -51.93 -0.36 0.71 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -33.83 326.25 -3.74 -37.57 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -3.56 Total: 11.92 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.15 Total: 2.81 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 1.06 Total: -44.11 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.83 Total: -29.45 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.17 Total: 16.33 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.83 -3.74 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321051577.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.363 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds