Wall clock time and date at job start Tue Mar 31 2020 04:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99902 * 2 1 4 4 C 1.52998 * 109.46856 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47299 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.88692 * 125.01755 * 5 4 3 7 7 C 1.35371 * 107.22924 * 180.02562 * 6 5 4 8 8 C 1.41496 * 105.50187 * 0.02562 * 7 6 5 9 9 C 1.47705 * 126.51803 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00207 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00345 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00304 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47403 * 179.97438 * 12 11 9 14 14 O 1.21295 * 119.99409 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00293 * 180.02562 * 13 12 11 16 16 C 1.37090 * 119.99873 * 180.02562 * 15 13 12 17 17 H 1.08003 * 120.00331 * 359.97438 * 16 15 13 18 18 C 1.38952 * 119.99930 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99745 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00056 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47016 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46945 * 120.00277 * 20 18 16 23 23 H 1.48504 * 109.46781 * 240.00017 * 20 18 16 24 24 N 1.28468 * 124.88202 * 305.02338 * 5 4 3 25 25 H 1.08996 * 109.47408 * 60.00063 * 1 2 3 26 26 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47279 * 299.99940 * 1 2 3 28 28 H 1.08996 * 109.47578 * 59.99843 * 3 2 1 29 29 H 1.09005 * 109.47176 * 299.99619 * 3 2 1 30 30 H 1.08991 * 109.47644 * 59.99853 * 4 3 2 31 31 H 1.09004 * 109.47035 * 299.99209 * 4 3 2 32 32 H 1.07998 * 126.38339 * 0.02562 * 6 5 4 33 33 H 1.07999 * 127.24829 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00006 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.47171 * 300.00083 * 12 11 9 36 36 H 1.09007 * 109.46888 * 60.00198 * 12 11 9 37 37 H 0.96996 * 119.99833 * 359.97438 * 15 13 12 38 38 H 0.97007 * 119.99797 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0266 2.9701 0.9054 7 6 5.3355 4.2445 0.5689 8 6 4.5714 4.5259 -0.5883 9 6 4.5553 5.7951 -1.3437 10 8 5.2472 6.7269 -0.9816 11 7 3.7727 5.9206 -2.4338 12 6 3.7563 7.1796 -3.1827 13 6 2.8077 7.0590 -4.3475 14 8 2.2044 6.0233 -4.5334 15 7 2.6298 8.1018 -5.1826 16 6 1.7665 7.9921 -6.2418 17 1 1.2292 7.0699 -6.4074 18 6 1.5827 9.0674 -7.1025 19 7 2.2368 10.1893 -6.9013 20 14 0.4069 8.9178 -8.5463 21 1 -0.2001 7.5625 -8.5519 22 1 -0.6641 9.9388 -8.4203 23 1 1.1497 9.1334 -9.8140 24 7 3.8773 3.4399 -0.8644 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8567 0.6438 -0.8907 31 1 3.8574 0.6436 0.8892 32 1 5.4223 2.4147 1.7428 33 1 6.0202 4.9071 1.0773 34 1 3.2204 5.1774 -2.7225 35 1 3.4280 7.9873 -2.5285 36 1 4.7589 7.3958 -3.5520 37 1 3.1120 8.9301 -5.0336 38 1 2.1087 10.9399 -7.5023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325168119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:16 Heat of formation + Delta-G solvation = -62.592201 kcal Electronic energy + Delta-G solvation = -22694.092783 eV Core-core repulsion = 18958.800315 eV Total energy + Delta-G solvation = -3735.292468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.68617 -40.86831 -39.79547 -38.99866 -36.27816 -35.36478 -34.95835 -33.39443 -31.80540 -30.76709 -29.29554 -27.38386 -26.56808 -25.04870 -23.19064 -22.40978 -21.39425 -20.99903 -20.09436 -19.08817 -18.18478 -17.59171 -17.27527 -17.04406 -16.93454 -16.84199 -16.54279 -16.31748 -15.80985 -15.64184 -15.27686 -15.05644 -14.73382 -14.25027 -14.04264 -13.90602 -13.62072 -13.56584 -13.01883 -12.92043 -12.63832 -12.45969 -12.35626 -12.12007 -11.88932 -11.59565 -11.40078 -10.79968 -10.58836 -10.42469 -10.19954 -10.10907 -10.02374 -8.52256 -6.02546 0.46406 1.17857 1.32720 1.34219 1.42107 1.56413 1.88107 1.99557 2.30867 2.32469 2.76148 3.08935 3.14676 3.38158 3.73956 3.81747 3.98456 4.09012 4.19550 4.24977 4.40056 4.40368 4.43334 4.47653 4.60942 4.66248 4.74796 4.77993 4.82055 5.17793 5.33883 5.37459 5.82708 5.90346 5.98964 6.35876 6.47635 6.84765 7.02078 7.07455 7.42091 7.93119 8.64976 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.015421 B = 0.003027 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.319157 B = 9249.348020 C =10924.170871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.277 5.277 6 C 0.012 3.988 7 C -0.195 4.195 8 C -0.041 4.041 9 C 0.601 3.399 10 O -0.567 6.567 11 N -0.698 5.698 12 C 0.120 3.880 13 C 0.432 3.568 14 O -0.625 6.625 15 N -0.557 5.557 16 C -0.338 4.338 17 H 0.085 0.915 18 C -0.010 4.010 19 N -0.915 5.915 20 Si 0.998 3.002 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.270 1.270 24 N -0.283 5.283 25 H 0.040 0.960 26 H 0.107 0.893 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.155 0.845 32 H 0.236 0.764 33 H 0.172 0.828 34 H 0.414 0.586 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.400 0.600 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.622 -17.884 17.698 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.027 4.027 4 C 0.003 3.997 5 N -0.067 5.067 6 C -0.130 4.130 7 C -0.223 4.223 8 C -0.200 4.200 9 C 0.387 3.613 10 O -0.445 6.445 11 N -0.351 5.351 12 C -0.008 4.008 13 C 0.219 3.781 14 O -0.513 6.513 15 N -0.193 5.193 16 C -0.467 4.467 17 H 0.103 0.897 18 C -0.211 4.211 19 N -0.555 5.555 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.195 1.195 24 N -0.120 5.120 25 H 0.059 0.941 26 H 0.126 0.874 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.172 0.828 32 H 0.253 0.747 33 H 0.190 0.810 34 H 0.252 0.748 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.234 0.766 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.971 -18.427 16.931 25.102 hybrid contribution -0.260 1.034 -0.508 1.181 sum 1.711 -17.393 16.424 23.983 Atomic orbital electron populations 1.22969 0.78854 1.04348 1.00773 1.87732 1.21793 1.26621 1.95661 1.22585 0.93074 0.85500 1.01553 1.21983 0.92155 0.77155 1.08379 1.45685 1.30875 1.11726 1.18408 1.23598 0.95720 0.95521 0.98204 1.22047 1.04967 0.97628 0.97694 1.21773 1.03847 0.93413 1.00941 1.17218 0.78880 0.85866 0.79328 1.90745 1.43915 1.40535 1.69300 1.45616 1.45248 1.16614 1.27672 1.20875 0.99982 0.87667 0.92245 1.20390 0.86873 0.84653 0.86181 1.90484 1.53708 1.30719 1.76392 1.41822 1.39275 1.13803 1.24394 1.19775 1.21319 1.00812 1.04801 0.89707 1.26139 0.99401 0.94110 1.01420 1.69688 1.42290 1.03868 1.39694 0.84803 0.77604 0.78461 0.77047 1.19526 1.19498 1.19518 1.73541 1.23181 0.98302 1.17013 0.94099 0.87427 0.92879 0.92026 0.93556 0.87580 0.82770 0.74732 0.81045 0.74800 0.88181 0.88218 0.76584 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -6.41 10.70 -148.98 -1.59 -8.00 16 3 C 0.05 0.80 6.04 71.98 0.43 1.24 16 4 C 0.12 1.47 6.77 86.38 0.58 2.05 16 5 N -0.28 -5.16 3.41 -347.95 -1.19 -6.35 16 6 C 0.01 0.17 11.40 83.54 0.95 1.12 16 7 C -0.20 -4.37 10.81 22.41 0.24 -4.13 16 8 C -0.04 -1.24 7.13 42.45 0.30 -0.94 16 9 C 0.60 21.86 7.83 86.75 0.68 22.54 16 10 O -0.57 -22.73 16.93 -3.96 -0.07 -22.80 16 11 N -0.70 -26.57 5.52 -469.83 -2.60 -29.17 16 12 C 0.12 4.69 6.15 85.63 0.53 5.22 16 13 C 0.43 20.95 7.85 87.66 0.69 21.64 16 14 O -0.62 -34.18 15.24 -3.08 -0.05 -34.22 16 15 N -0.56 -28.80 5.29 -306.98 -1.62 -30.43 16 16 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 17 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16 18 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 19 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 20 Si 1.00 42.34 29.55 68.60 2.03 44.37 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 N -0.28 -7.89 11.36 -48.18 -0.55 -8.44 16 25 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.97 8.08 -2.38 -0.02 0.95 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.15 0.58 8.04 -2.38 -0.02 0.56 16 32 H 0.24 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.41 16.42 7.16 -92.71 -0.66 15.75 16 35 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.10 3.65 8.14 -2.38 -0.02 3.64 16 37 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 38 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -74.56 342.30 1.30 -73.26 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.29 Total: 38.66 kcal Atomic # 6 Polarization: 25.09 SS G_CDS: 6.94 Total: 32.03 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -5.67 Total: -123.29 kcal Atomic # 8 Polarization: -63.32 SS G_CDS: -1.71 Total: -65.03 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -74.56 1.30 -73.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325168119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.665 kcal (2) G-P(sol) polarization free energy of solvation -74.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds