Wall clock time and date at job start Tue Mar 31 2020 03:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47055 * 324.99804 * 10 9 7 12 12 C 1.52995 * 109.47120 * 84.99640 * 10 9 7 13 13 O 1.42899 * 109.47156 * 65.00268 * 12 10 9 14 14 C 1.52998 * 109.47009 * 204.99963 * 10 9 7 15 15 N 1.46500 * 109.47304 * 54.99714 * 14 10 9 16 16 C 1.34776 * 119.99630 * 179.97438 * 15 14 10 17 17 O 1.21279 * 120.00423 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99649 * 179.97438 * 16 15 14 19 19 C 1.50700 * 109.47087 * 180.02562 * 18 16 15 20 20 C 1.38269 * 119.98555 * 269.73190 * 19 18 16 21 21 C 1.38223 * 120.04884 * 179.73060 * 20 19 18 22 22 C 1.38215 * 120.02570 * 0.54011 * 21 20 19 23 23 C 1.38438 * 119.97493 * 359.72928 * 22 21 20 24 24 F 1.35103 * 120.02842 * 180.02562 * 23 22 21 25 25 C 1.38173 * 119.98765 * 90.00147 * 19 18 16 26 26 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 27 27 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47180 * 185.00052 * 12 10 9 29 29 H 1.09003 * 109.47292 * 304.99824 * 12 10 9 30 30 H 0.96704 * 113.99871 * 179.97438 * 13 12 10 31 31 H 1.09008 * 109.46958 * 174.99988 * 14 10 9 32 32 H 1.08993 * 109.47007 * 294.99451 * 14 10 9 33 33 H 0.96999 * 119.99793 * 0.02562 * 15 14 10 34 34 H 1.08999 * 109.47441 * 300.00684 * 18 16 15 35 35 H 1.09004 * 109.46729 * 60.00092 * 18 16 15 36 36 H 1.08002 * 119.97510 * 359.97089 * 20 19 18 37 37 H 1.07999 * 119.99033 * 180.26939 * 21 20 19 38 38 H 1.08006 * 120.01704 * 179.75320 * 22 21 20 39 39 H 1.08002 * 120.01255 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9664 -3.5493 -0.6042 12 6 2.4273 -4.0388 1.4232 13 8 1.2359 -4.2934 2.1701 14 6 1.1784 -4.7507 -0.6202 15 7 0.7267 -4.3311 -1.9492 16 6 -0.0652 -5.1417 -2.6788 17 8 -0.4041 -6.2183 -2.2351 18 6 -0.5303 -4.7098 -4.0456 19 6 -1.3966 -5.7873 -4.6452 20 6 -0.8259 -6.7846 -5.4144 21 6 -1.6184 -7.7767 -5.9603 22 6 -2.9840 -7.7667 -5.7472 23 6 -3.5572 -6.7656 -4.9819 24 9 -4.8919 -6.7550 -4.7724 25 6 -2.7615 -5.7752 -4.4307 26 1 -0.4851 -0.8400 -0.0004 27 1 0.3555 -2.3881 -0.0015 28 1 3.0478 -4.9349 1.4124 29 1 2.9788 -3.2206 1.8865 30 1 1.3947 -4.5421 3.0910 31 1 1.7530 -5.6731 -0.7062 32 1 0.3134 -4.9200 0.0209 33 1 0.9981 -3.4701 -2.3042 34 1 -1.1054 -3.7878 -3.9593 35 1 0.3347 -4.5396 -4.6868 36 1 0.2405 -6.7905 -5.5855 37 1 -1.1711 -8.5576 -6.5574 38 1 -3.6037 -8.5397 -6.1772 39 1 -3.2075 -4.9939 -3.8332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486058147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:58 Heat of formation + Delta-G solvation = -99.608166 kcal Electronic energy + Delta-G solvation = -23196.734290 eV Core-core repulsion = 19439.916727 eV Total energy + Delta-G solvation = -3756.817562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.94511 -39.92578 -38.65320 -37.20641 -35.03600 -33.71688 -32.95389 -31.40735 -30.64764 -28.54224 -27.56804 -25.07021 -23.49000 -22.85865 -22.01928 -20.32627 -19.96587 -17.77000 -17.42052 -16.82009 -16.72877 -16.52088 -16.28843 -15.83308 -15.61971 -15.10670 -14.58071 -14.20104 -14.05353 -13.74107 -13.55187 -13.50588 -13.26193 -13.17307 -13.05896 -12.19251 -12.17743 -11.88590 -11.64838 -11.46775 -11.17591 -10.88924 -10.77496 -10.46644 -10.08936 -9.73624 -9.53355 -9.23138 -9.05835 -9.00542 -8.75371 -8.67915 -7.14347 -6.17749 -3.19531 1.04075 1.11228 2.87391 3.30382 3.45820 3.49974 3.63961 3.72040 4.12964 4.48714 4.57921 4.63060 4.83041 4.88253 5.05038 5.11913 5.17280 5.30125 5.33986 5.41623 5.44107 5.51017 5.72905 5.80439 5.92554 5.93154 5.93985 5.99993 6.15773 6.25285 6.36473 6.37309 6.63061 6.78490 6.81449 7.70031 7.84982 8.10606 8.50232 8.68105 9.12461 9.99318 10.14804 11.29872 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.003331 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.589386 B = 8403.188732 C = 9129.565512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.039 4.039 3 Si 1.082 2.918 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.340 4.340 8 H 0.064 0.936 9 N -0.725 5.725 10 C 0.172 3.828 11 H 0.067 0.933 12 C 0.059 3.941 13 O -0.562 6.562 14 C 0.118 3.882 15 N -0.715 5.715 16 C 0.512 3.488 17 O -0.545 6.545 18 C -0.108 4.108 19 C -0.029 4.029 20 C -0.117 4.117 21 C -0.091 4.091 22 C -0.159 4.159 23 C 0.098 3.902 24 F -0.142 7.142 25 C -0.139 4.139 26 H 0.257 0.743 27 H 0.372 0.628 28 H 0.028 0.972 29 H 0.049 0.951 30 H 0.365 0.635 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.409 0.591 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 -13.146 -10.145 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.238 4.238 3 Si 0.913 3.087 4 H -0.224 1.224 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.471 4.471 8 H 0.082 0.918 9 N -0.367 5.367 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.007 4.007 15 N -0.366 5.366 16 C 0.297 3.703 17 O -0.423 6.423 18 C -0.148 4.148 19 C -0.029 4.029 20 C -0.135 4.135 21 C -0.109 4.109 22 C -0.177 4.177 23 C 0.079 3.921 24 F -0.120 7.120 25 C -0.158 4.158 26 H 0.069 0.931 27 H 0.205 0.795 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.210 0.790 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.245 0.755 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.246 -12.059 -10.410 15.932 hybrid contribution 0.194 -1.357 0.698 1.539 sum 0.441 -13.416 -9.712 16.568 Atomic orbital electron populations 1.70836 1.06068 1.28713 1.52664 1.25747 0.97006 1.00930 1.00120 0.83213 0.73854 0.75416 0.76261 1.22381 1.22146 1.21381 1.20044 0.91919 0.85701 1.49412 0.91754 1.42376 1.05062 1.00047 1.89265 1.20523 0.94949 0.86514 0.91972 0.91566 1.23021 0.86572 0.97330 0.95297 1.86549 1.32321 1.91819 1.25873 1.21550 0.99397 0.96893 0.82814 1.46004 1.50647 1.21775 1.18222 1.20342 0.78637 0.84721 0.86605 1.90702 1.56683 1.22568 1.72324 1.20730 1.00733 0.98567 0.94725 1.19147 0.92541 0.95630 0.95618 1.21061 1.00170 0.94316 0.97958 1.20930 0.92615 0.98295 0.99087 1.21101 0.96225 0.99124 1.01291 1.17640 0.77344 0.97210 0.99913 1.91495 1.30683 1.96358 1.93499 1.21025 0.93711 0.99568 1.01467 0.93130 0.79460 0.95412 0.93259 0.79016 0.92078 0.90747 0.75481 0.87364 0.87534 0.85458 0.85071 0.84976 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.97 13.70 55.49 0.76 -27.21 16 2 C -0.04 -1.09 5.50 -17.43 -0.10 -1.18 16 3 Si 1.08 24.82 29.92 -169.99 -5.09 19.73 16 4 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.34 -8.88 9.93 -15.06 -0.15 -9.03 16 8 H 0.06 1.65 7.83 -52.48 -0.41 1.24 16 9 N -0.72 -16.88 4.51 -53.43 -0.24 -17.12 16 10 C 0.17 3.21 2.84 -67.93 -0.19 3.02 16 11 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 12 C 0.06 1.02 6.86 37.16 0.25 1.28 16 13 O -0.56 -10.00 12.64 -35.23 -0.45 -10.44 16 14 C 0.12 2.06 5.12 -4.04 -0.02 2.04 16 15 N -0.71 -11.54 5.39 -60.29 -0.32 -11.87 16 16 C 0.51 8.10 7.82 -10.98 -0.09 8.02 16 17 O -0.54 -10.52 16.03 5.56 0.09 -10.43 16 18 C -0.11 -1.28 5.83 -29.03 -0.17 -1.45 16 19 C -0.03 -0.36 4.37 -104.63 -0.46 -0.82 16 20 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 21 C -0.09 -0.90 10.04 -39.60 -0.40 -1.30 16 22 C -0.16 -1.71 10.03 -39.52 -0.40 -2.11 16 23 C 0.10 1.26 7.30 -39.42 -0.29 0.97 16 24 F -0.14 -1.91 17.27 2.25 0.04 -1.87 16 25 C -0.14 -1.83 9.68 -39.52 -0.38 -2.21 16 26 H 0.26 7.66 6.77 -40.82 -0.28 7.38 16 27 H 0.37 9.38 6.63 -40.82 -0.27 9.11 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.36 4.68 9.12 45.56 0.42 5.10 16 31 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.07 1.48 7.39 -51.93 -0.38 1.10 16 33 H 0.41 6.53 8.14 -40.82 -0.33 6.20 16 34 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 35 H 0.11 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -33.48 342.58 -7.08 -40.56 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -4.27 Total: 17.94 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.77 Total: -4.45 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.19 Total: -56.20 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.36 Total: -20.88 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.73 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.48 -7.08 -40.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486058147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.046 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds