Wall clock time and date at job start Tue Mar 31 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00001 * 2 1 4 4 O 1.20826 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99603 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47670 * 40.00222 * 5 3 2 7 7 N 1.46906 * 109.46540 * 159.99961 * 5 3 2 8 8 C 1.52993 * 109.46777 * 279.99389 * 5 3 2 9 9 C 1.53004 * 109.46949 * 175.00381 * 8 5 3 10 10 C 1.50704 * 109.47180 * 180.02562 * 9 8 5 11 11 O 1.21305 * 120.00222 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00096 * 179.97438 * 10 9 8 13 13 C 1.40593 * 120.00260 * 180.02562 * 12 10 9 14 14 C 1.40650 * 126.07858 * 359.68777 * 13 12 10 15 15 N 1.30910 * 108.38459 * 179.81672 * 14 13 12 16 16 N 1.40066 * 108.40663 * 0.44793 * 15 14 13 17 17 C 1.37324 * 126.07036 * 179.69395 * 16 15 14 18 18 H 1.08000 * 120.00352 * 180.02562 * 17 16 15 19 19 C 1.38988 * 119.99867 * 0.02746 * 17 16 15 20 20 N 1.31294 * 120.00212 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99871 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47041 * 59.99786 * 21 19 17 23 23 H 1.48499 * 109.46825 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47211 * 299.99914 * 21 19 17 25 25 C 1.35678 * 126.08492 * 180.02562 * 13 12 10 26 26 H 1.09001 * 109.47157 * 299.99890 * 1 2 3 27 27 H 1.09004 * 109.47122 * 60.00023 * 1 2 3 28 28 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.00897 * 110.99961 * 296.04318 * 7 5 3 30 30 H 1.00901 * 110.99847 * 60.00091 * 7 5 3 31 31 H 1.09002 * 109.47790 * 295.00626 * 8 5 3 32 32 H 1.09003 * 109.47732 * 55.00777 * 8 5 3 33 33 H 1.08997 * 109.47171 * 299.99956 * 9 8 5 34 34 H 1.08998 * 109.47223 * 60.00325 * 9 8 5 35 35 H 0.97004 * 119.99849 * 0.02562 * 12 10 9 36 36 H 1.08004 * 125.80724 * 359.97438 * 14 13 12 37 37 H 0.96996 * 119.99931 * 180.02562 * 20 19 17 38 38 H 1.07996 * 126.24520 * 359.97410 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9702 0.5078 -0.6614 7 7 3.9871 2.6002 -0.4742 8 6 4.0892 1.0511 1.4197 9 6 5.6185 1.0069 1.3992 10 6 6.1336 0.7860 2.7981 11 8 5.3541 0.6744 3.7209 12 7 7.4602 0.7115 3.0239 13 6 7.9407 0.5049 4.3289 14 6 7.1563 0.3654 5.4880 15 7 7.9560 0.1844 6.5085 16 7 9.2775 0.2113 6.0449 17 6 10.4067 0.0638 6.8124 18 1 11.3823 0.1016 6.3506 19 6 10.2941 -0.1341 8.1835 20 7 9.1082 -0.1796 8.7450 21 14 11.8301 -0.3354 9.2274 22 1 12.6724 0.8819 9.1085 23 1 11.4414 -0.5313 10.6472 24 1 12.5975 -1.5162 8.7563 25 6 9.2437 0.4109 4.6951 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.7092 2.7465 -1.4331 30 1 3.6251 3.3290 0.1224 31 1 3.7579 1.8674 2.0617 32 1 3.7037 0.1069 1.8045 33 1 5.9498 0.1907 0.7573 34 1 6.0041 1.9511 1.0145 35 1 8.0835 0.8004 2.2859 36 1 6.0776 0.3991 5.5288 37 1 9.0296 -0.3174 9.7019 38 1 10.0982 0.4808 4.0384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573928007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:24 Heat of formation + Delta-G solvation = -43.139450 kcal Electronic energy + Delta-G solvation = -22832.910568 eV Core-core repulsion = 19098.461634 eV Total energy + Delta-G solvation = -3734.448934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.91463 -39.85580 -38.62605 -37.15724 -35.79457 -34.13264 -33.10162 -31.59565 -30.16979 -28.80136 -27.83893 -26.43440 -24.77494 -23.09332 -20.98767 -20.70714 -20.00610 -19.34083 -18.17041 -17.52495 -17.15597 -16.84920 -16.25667 -16.07515 -15.41586 -15.26151 -15.08273 -14.40765 -14.12586 -13.84623 -13.63097 -13.35393 -13.13446 -12.84917 -12.63699 -12.33506 -12.12658 -11.64831 -11.54460 -11.36567 -11.22718 -11.15343 -11.10472 -10.94656 -10.91589 -10.53816 -10.08746 -9.41571 -9.11796 -9.09305 -8.75639 -8.01494 -6.64346 -6.52106 -4.18926 1.79879 2.40628 2.90125 3.06689 3.09434 3.10741 3.66943 3.72863 3.91665 4.02077 4.46171 4.47636 4.58485 4.73536 4.78185 4.86329 4.90178 5.05540 5.09913 5.20446 5.28253 5.44455 5.70449 5.96027 6.02860 6.09998 6.28891 6.49971 6.51680 6.91722 6.95350 7.01258 7.18872 7.29911 7.36522 7.89962 8.24671 8.35278 8.68602 8.94350 9.42379 9.71813 10.43972 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.002416 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.435186 B =11587.713418 C =11994.897246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.430 3.570 4 O -0.515 6.515 5 C 0.102 3.898 6 H 0.120 0.880 7 N -0.812 5.812 8 C -0.090 4.090 9 C -0.124 4.124 10 C 0.496 3.504 11 O -0.541 6.541 12 N -0.626 5.626 13 C -0.059 4.059 14 C -0.035 4.035 15 N -0.261 5.261 16 N -0.144 5.144 17 C -0.324 4.324 18 H 0.115 0.885 19 C 0.046 3.954 20 N -0.771 5.771 21 Si 0.934 3.066 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.085 4.085 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.346 0.654 30 H 0.355 0.645 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.397 0.603 36 H 0.176 0.824 37 H 0.275 0.725 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.766 1.042 -18.589 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.271 3.729 4 O -0.403 6.403 5 C -0.012 4.012 6 H 0.137 0.863 7 N -0.342 5.342 8 C -0.129 4.129 9 C -0.165 4.165 10 C 0.282 3.718 11 O -0.419 6.419 12 N -0.268 5.268 13 C -0.164 4.164 14 C -0.210 4.210 15 N -0.092 5.092 16 N 0.088 4.912 17 C -0.456 4.456 18 H 0.133 0.867 19 C -0.171 4.171 20 N -0.398 5.398 21 Si 0.758 3.242 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.236 4.236 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.230 0.770 36 H 0.192 0.808 37 H 0.085 0.915 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.856 0.778 -16.294 18.561 hybrid contribution -0.304 0.361 -1.062 1.162 sum -9.160 1.140 -17.356 19.658 Atomic orbital electron populations 1.23293 0.76536 1.03844 1.02454 1.86571 1.23428 1.33622 1.83461 1.25653 0.94045 0.81566 0.71683 1.90665 1.67333 1.36525 1.45741 1.21515 0.84016 0.94887 1.00812 0.86263 1.59210 1.64363 1.02465 1.08156 1.21268 0.95215 1.04532 0.91837 1.21455 0.95586 1.04790 0.94645 1.20472 0.82084 0.78284 0.90953 1.90597 1.55822 1.50303 1.45151 1.42554 1.06525 1.70015 1.07752 1.17301 0.92009 1.22483 0.84632 1.24114 1.00170 1.07685 0.89059 1.78243 0.85524 1.25529 1.19950 1.44531 1.05332 1.38502 1.02806 1.19807 0.83892 1.52071 0.89823 0.86717 1.25636 0.98461 0.95621 0.97401 1.70209 1.22559 1.35095 1.11924 0.85905 0.80213 0.79431 0.78632 1.19186 1.20174 1.19184 1.21270 0.95794 1.19308 0.87218 0.91784 0.92074 0.87972 0.84050 0.83023 0.90305 0.89507 0.89123 0.87840 0.77007 0.80762 0.91459 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.55 10.57 -39.25 -0.41 -3.96 16 3 C 0.43 4.48 7.19 36.01 0.26 4.74 16 4 O -0.51 -6.54 16.00 -18.75 -0.30 -6.84 16 5 C 0.10 0.86 3.26 -68.86 -0.22 0.63 16 6 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 7 N -0.81 -6.15 8.44 -5.65 -0.05 -6.20 16 8 C -0.09 -0.97 4.13 -26.73 -0.11 -1.08 16 9 C -0.12 -1.33 5.59 -27.88 -0.16 -1.49 16 10 C 0.50 8.26 7.80 -10.98 -0.09 8.18 16 11 O -0.54 -11.34 13.13 5.54 0.07 -11.27 16 12 N -0.63 -10.89 5.47 -10.00 -0.05 -10.94 16 13 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 14 C -0.03 -0.93 10.85 -17.03 -0.18 -1.11 16 15 N -0.26 -7.71 10.40 30.80 0.32 -7.39 16 16 N -0.14 -3.99 3.74 -11.41 -0.04 -4.04 16 17 C -0.32 -8.65 10.25 -14.81 -0.15 -8.80 16 18 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 19 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 20 N -0.77 -21.81 11.81 55.49 0.66 -21.16 16 21 Si 0.93 19.07 29.55 -169.99 -5.02 14.05 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 C -0.09 -2.02 11.49 -16.39 -0.19 -2.21 16 26 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.35 2.13 9.06 -39.29 -0.36 1.78 16 30 H 0.35 2.97 8.58 -39.29 -0.34 2.64 16 31 H 0.08 0.99 8.10 -51.93 -0.42 0.56 16 32 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.99 7.75 -51.93 -0.40 0.58 16 35 H 0.40 5.22 8.83 -40.82 -0.36 4.86 16 36 H 0.18 4.63 5.92 -52.48 -0.31 4.31 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -35.69 335.17 -4.92 -40.62 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -4.69 Total: 12.74 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.45 Total: -0.66 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.83 Total: -49.72 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.64 Total: -22.07 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.69 -4.92 -40.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573928007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.524 kcal (2) G-P(sol) polarization free energy of solvation -35.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds