Wall clock time and date at job start Tue Mar 31 2020 04:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40078 * 126.04033 * 2 1 4 4 C 1.30834 * 108.20974 * 179.97438 * 3 2 1 5 5 C 1.39873 * 108.20180 * 0.02562 * 4 3 2 6 6 C 1.34944 * 126.03459 * 179.68899 * 2 1 3 7 7 C 1.50703 * 126.12509 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.47165 * 24.62897 * 7 6 2 9 9 N 1.46901 * 109.46745 * 144.62644 * 7 6 2 10 10 C 1.46901 * 110.99981 * 204.99820 * 9 7 6 11 11 C 1.50696 * 109.47460 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00050 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00206 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00103 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47340 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99717 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00376 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99719 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00260 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46872 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47111 * 119.99646 * 19 17 15 22 22 H 1.48496 * 109.47048 * 239.99874 * 19 17 15 23 23 C 1.50701 * 109.47142 * 264.62374 * 7 6 2 24 24 O 1.20827 * 119.99724 * 266.30753 * 23 7 6 25 25 O 1.34219 * 120.00002 * 86.30817 * 23 7 6 26 26 H 1.09000 * 109.46721 * 95.29561 * 1 2 3 27 27 H 1.08995 * 109.47752 * 215.29867 * 1 2 3 28 28 H 1.09004 * 109.46973 * 335.30206 * 1 2 3 29 29 H 1.07995 * 125.90198 * 180.02562 * 4 3 2 30 30 H 1.07992 * 126.04487 * 179.97438 * 5 4 3 31 31 H 1.00899 * 111.00777 * 81.04765 * 9 7 6 32 32 H 1.09007 * 109.47242 * 300.00137 * 10 9 7 33 33 H 1.09005 * 109.47191 * 60.00083 * 10 9 7 34 34 H 0.97001 * 120.00279 * 359.97438 * 13 11 10 35 35 H 1.08999 * 109.46651 * 299.99471 * 14 13 11 36 36 H 1.08996 * 109.47318 * 59.99416 * 14 13 11 37 37 H 0.97003 * 119.99962 * 180.02562 * 18 17 15 38 38 H 0.96708 * 117.00287 * 179.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5438 -0.6666 0.0003 6 6 2.2589 -1.0912 0.0059 7 6 1.7972 -2.5258 0.0132 8 1 0.7968 -2.5877 -0.4152 9 7 2.7225 -3.3419 -0.7841 10 6 2.0543 -4.5449 -1.2982 11 6 3.0326 -5.3555 -2.1086 12 8 4.1741 -4.9690 -2.2449 13 7 2.6389 -6.5095 -2.6827 14 6 3.5901 -7.2979 -3.4701 15 6 2.9046 -8.5319 -3.9976 16 1 1.8644 -8.7112 -3.7689 17 6 3.6052 -9.4320 -4.7722 18 7 4.8716 -9.2133 -5.0511 19 14 2.7551 -10.9612 -5.4267 20 1 1.3407 -10.9731 -4.9745 21 1 2.8008 -10.9560 -6.9110 22 1 3.4483 -12.1704 -4.9144 23 6 1.7695 -3.0374 1.4304 24 8 2.7266 -3.6215 1.8806 25 8 0.6816 -2.8443 2.1925 26 1 -0.3633 -0.0948 -1.0233 27 1 -0.3634 -0.8387 0.5938 28 1 -0.3633 0.9337 0.4294 29 1 4.4054 1.3709 0.0011 30 1 4.4210 -1.2964 0.0003 31 1 3.5431 -3.5848 -0.2496 32 1 1.6908 -5.1437 -0.4630 33 1 1.2142 -4.2526 -1.9284 34 1 1.7258 -6.8186 -2.5741 35 1 3.9546 -6.6994 -4.3050 36 1 4.4294 -7.5905 -2.8392 37 1 5.3645 -9.8463 -5.5964 38 1 0.7105 -3.1909 3.0949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601033378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:38 Heat of formation + Delta-G solvation = -71.844476 kcal Electronic energy + Delta-G solvation = -23325.546915 eV Core-core repulsion = 19589.853238 eV Total energy + Delta-G solvation = -3735.693677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.52053 -41.35149 -40.46896 -37.62764 -36.78366 -36.06139 -34.35105 -34.22624 -32.29290 -29.88703 -28.58842 -27.57828 -26.46474 -24.35420 -23.16732 -22.08466 -21.43443 -20.74852 -19.52008 -19.10286 -18.38801 -18.20305 -17.29750 -17.10888 -16.76636 -16.37377 -16.28645 -16.08282 -15.56422 -15.34591 -14.96697 -14.61734 -14.57675 -14.20951 -14.08012 -13.81050 -13.53602 -13.34949 -13.19262 -12.98148 -12.87814 -12.73969 -12.69358 -12.20975 -12.10861 -11.74208 -11.44570 -10.82343 -10.80618 -10.32282 -9.97337 -9.78602 -9.54194 -8.28119 -6.44601 0.56896 0.98161 1.43851 1.45412 1.46077 1.58778 1.72909 1.76165 2.00578 2.28786 2.46017 2.99327 3.07157 3.35246 3.65954 3.73128 3.87665 4.08849 4.22639 4.36125 4.38188 4.47077 4.66116 4.72207 4.76144 5.07815 5.13598 5.25922 5.35349 5.48348 5.49881 5.66149 5.71591 5.84382 5.87702 5.99986 6.64950 6.66994 6.76991 6.91789 7.24875 7.50769 8.84328 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.002848 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.444321 B = 9828.349627 C =10156.364432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.364 5.364 3 N -0.313 5.313 4 C 0.039 3.961 5 C -0.257 4.257 6 C 0.083 3.917 7 C 0.173 3.827 8 H 0.159 0.841 9 N -0.648 5.648 10 C 0.049 3.951 11 C 0.494 3.506 12 O -0.589 6.589 13 N -0.706 5.706 14 C 0.266 3.734 15 C -0.553 4.553 16 H 0.086 0.914 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.985 3.015 20 H -0.251 1.251 21 H -0.280 1.280 22 H -0.281 1.281 23 C 0.462 3.538 24 O -0.535 6.535 25 O -0.500 6.500 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.208 0.792 30 H 0.143 0.857 31 H 0.360 0.640 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.410 0.590 35 H -0.012 1.012 36 H -0.014 1.014 37 H 0.268 0.732 38 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.764 16.006 14.190 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.147 5.147 3 N -0.136 5.136 4 C -0.145 4.145 5 C -0.286 4.286 6 C -0.046 4.046 7 C 0.058 3.942 8 H 0.177 0.823 9 N -0.283 5.283 10 C -0.083 4.083 11 C 0.281 3.719 12 O -0.470 6.470 13 N -0.357 5.357 14 C 0.143 3.857 15 C -0.591 4.591 16 H 0.104 0.896 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.808 3.192 20 H -0.174 1.174 21 H -0.206 1.206 22 H -0.207 1.207 23 C 0.302 3.698 24 O -0.424 6.424 25 O -0.313 6.313 26 H 0.111 0.889 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.225 0.775 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.105 0.895 33 H 0.162 0.838 34 H 0.246 0.754 35 H 0.006 0.994 36 H 0.004 0.996 37 H 0.077 0.923 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -15.620 17.555 13.165 26.935 hybrid contribution 0.784 -2.359 0.887 2.640 sum -14.836 15.196 14.052 25.465 Atomic orbital electron populations 1.22347 0.71868 1.06444 1.05125 1.48754 1.07827 1.02089 1.56066 1.77322 1.02494 1.08393 1.25361 1.24263 0.95850 0.95025 0.99362 1.21459 0.96974 0.95541 1.14666 1.20121 0.91744 0.88509 1.04229 1.19535 1.00740 0.88126 0.85775 0.82320 1.60319 1.07920 1.20729 1.39301 1.21998 0.96314 0.90382 0.99591 1.21178 0.89037 0.81466 0.80260 1.90678 1.22562 1.70903 1.62832 1.46115 1.15715 1.22260 1.51560 1.18535 0.88469 0.89768 0.88901 1.21658 0.98597 1.05915 1.32961 0.89563 1.26081 0.95425 1.02250 0.96012 1.70150 1.10329 1.38193 1.38389 0.85109 0.79101 0.77271 0.77715 1.17396 1.20563 1.20666 1.24502 0.79973 0.75562 0.89790 1.90784 1.37218 1.40547 1.73845 1.84464 1.40558 1.74897 1.31354 0.88902 0.87069 0.88093 0.77514 0.83955 0.81751 0.89537 0.83755 0.75377 0.99436 0.99631 0.92309 0.70714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.96 127.77 1.40 2.19 16 2 N -0.36 -7.06 4.01 -356.01 -1.43 -8.49 16 3 N -0.31 -7.38 12.57 -57.03 -0.72 -8.10 16 4 C 0.04 0.87 12.03 85.24 1.03 1.90 16 5 C -0.26 -6.31 10.31 21.99 0.23 -6.08 16 6 C 0.08 1.78 5.96 41.41 0.25 2.03 16 7 C 0.17 3.11 2.62 43.42 0.11 3.23 16 8 H 0.16 1.66 7.25 -2.39 -0.02 1.64 16 9 N -0.65 -16.37 5.50 -503.36 -2.77 -19.14 16 10 C 0.05 1.14 5.96 85.56 0.51 1.65 16 11 C 0.49 18.86 7.87 87.66 0.69 19.55 16 12 O -0.59 -28.93 16.20 -3.05 -0.05 -28.98 16 13 N -0.71 -28.43 5.55 -466.78 -2.59 -31.02 16 14 C 0.27 14.43 5.43 85.63 0.46 14.90 16 15 C -0.55 -29.57 9.28 25.60 0.24 -29.33 16 16 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 17 C 0.00 0.10 5.46 84.65 0.46 0.56 16 18 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 19 Si 0.98 41.79 29.54 68.60 2.03 43.82 16 20 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 23 C 0.46 8.47 7.27 71.24 0.52 8.99 16 24 O -0.54 -14.11 16.62 21.96 0.36 -13.75 16 25 O -0.50 -5.18 13.42 -51.31 -0.69 -5.87 16 26 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.11 0.57 7.79 -2.39 -0.02 0.56 16 28 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.21 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.36 10.96 7.29 -89.69 -0.65 10.31 16 32 H 0.09 1.63 8.00 -2.38 -0.02 1.61 16 33 H 0.14 2.30 8.06 -2.38 -0.02 2.28 16 34 H 0.41 13.05 8.32 -92.71 -0.77 12.28 16 35 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 36 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.43 1.39 9.10 -74.05 -0.67 0.72 16 Total: -1.00 -83.84 341.55 -0.64 -84.48 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.97 Total: 23.34 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 5.89 Total: 19.57 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -7.22 Total: -122.62 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.37 Total: -48.60 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -83.84 -0.64 -84.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601033378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.637 kcal (2) G-P(sol) polarization free energy of solvation -83.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds