Wall clock time and date at job start Tue Mar 31 2020 03:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46694 * 180.02562 * 10 9 7 12 12 O 1.42900 * 112.94785 * 53.40806 * 11 10 9 13 13 C 1.53953 * 113.74287 * 281.67550 * 11 10 9 14 14 N 1.47589 * 86.11516 * 222.04974 * 13 11 10 15 15 C 1.36932 * 134.49116 * 204.63744 * 14 13 11 16 16 H 1.08004 * 120.00130 * 180.02562 * 15 14 13 17 17 C 1.38820 * 119.99963 * 0.02562 * 15 14 13 18 18 N 1.31613 * 119.99942 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00048 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46935 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 119.99672 * 19 17 15 22 22 H 1.48492 * 109.47136 * 239.99820 * 19 17 15 23 23 C 1.47579 * 91.01578 * 24.64112 * 14 13 11 24 24 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 25 25 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 26 26 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 27 27 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 28 28 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 29 29 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 30 30 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 31 31 H 1.08992 * 109.47261 * 299.99742 * 10 9 7 32 32 H 1.08998 * 109.47220 * 60.00528 * 10 9 7 33 33 H 0.96702 * 114.00015 * 309.67040 * 12 11 10 34 34 H 1.08998 * 113.76983 * 336.34847 * 13 11 10 35 35 H 1.08996 * 113.77148 * 107.75243 * 13 11 10 36 36 H 0.97002 * 120.00018 * 180.02562 * 18 17 15 37 37 H 1.09005 * 113.76644 * 221.05997 * 23 14 13 38 38 H 1.08997 * 113.87240 * 89.67329 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 6 8.0112 -3.6028 3.0522 12 8 9.0623 -3.0353 2.2679 13 6 7.7585 -5.0946 2.7677 14 7 8.7350 -5.3616 3.8417 15 6 9.5651 -6.4073 4.1456 16 1 10.2026 -6.3554 5.0159 17 6 9.5873 -7.5341 3.3352 18 7 8.8100 -7.5976 2.2750 19 14 10.7203 -8.9604 3.7494 20 1 11.4854 -8.6429 4.9819 21 1 9.9123 -10.1866 3.9699 22 1 11.6643 -9.1852 2.6254 23 6 8.4573 -4.0490 4.4565 24 8 2.3021 -1.0832 0.0002 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5143 27 1 -0.3633 0.8901 0.5136 28 1 4.6248 -2.4057 -0.5124 29 1 5.6151 -0.9265 -0.5120 30 1 6.8586 -2.8320 0.9328 31 1 6.9334 -1.8097 3.5645 32 1 5.9424 -3.2882 3.5651 33 1 8.7931 -2.7807 1.3747 34 1 6.7458 -5.4214 3.0036 35 1 8.0917 -5.4163 1.7811 36 1 8.8253 -8.3852 1.7089 37 1 9.3484 -3.5359 4.8181 38 1 7.6502 -4.0668 5.1888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672076020.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:40 Heat of formation + Delta-G solvation = -19.096554 kcal Electronic energy + Delta-G solvation = -23304.904462 eV Core-core repulsion = 19571.498107 eV Total energy + Delta-G solvation = -3733.406355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.29198 -41.22853 -40.12518 -37.25658 -36.52437 -35.35236 -34.65353 -34.00800 -32.08537 -30.19550 -28.53396 -27.34895 -26.71360 -24.33929 -23.69250 -23.39173 -21.78066 -20.96238 -19.29475 -18.75242 -18.38974 -18.00893 -17.49086 -17.22129 -16.71822 -16.42437 -15.83909 -15.80531 -15.58477 -15.22167 -14.91760 -14.71126 -14.38862 -13.97515 -13.89790 -13.64292 -13.53420 -13.48815 -13.23589 -12.97139 -12.93744 -12.85379 -12.53829 -12.18459 -12.03441 -11.78423 -11.50056 -11.20813 -10.97328 -10.71808 -10.52519 -10.23804 -8.92915 -7.91490 -5.23478 0.05851 1.16026 1.28646 1.44146 1.46277 1.46738 1.56891 2.05763 2.46424 2.79174 3.07419 3.28405 3.34467 3.37738 3.52142 3.67762 3.84200 3.90619 4.12648 4.34069 4.35821 4.43442 4.56813 4.57919 4.69374 4.71518 4.75997 4.79078 4.95860 5.04557 5.18093 5.21762 5.34503 5.50838 5.93189 6.33544 6.86815 6.92711 7.06080 7.20237 7.59251 8.52537 9.25244 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.034382 B = 0.002692 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.179102 B =10399.431054 C =10719.451400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.170 3.830 3 N -0.331 5.331 4 N -0.310 5.310 5 C 0.180 3.820 6 C -0.041 4.041 7 C 0.521 3.479 8 O -0.583 6.583 9 N -0.705 5.705 10 C 0.118 3.882 11 C 0.101 3.899 12 O -0.540 6.540 13 C 0.144 3.856 14 N -0.637 5.637 15 C -0.233 4.233 16 H 0.080 0.920 17 C -0.065 4.065 18 N -0.949 5.949 19 Si 0.978 3.022 20 H -0.269 1.269 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.127 3.873 24 O -0.229 6.229 25 H 0.125 0.875 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.170 0.830 29 H 0.178 0.822 30 H 0.418 0.582 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.385 0.615 34 H 0.028 0.972 35 H 0.054 0.946 36 H 0.249 0.751 37 H 0.056 0.944 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.979 12.656 -8.897 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 N -0.177 5.177 4 N -0.155 5.155 5 C -0.033 4.033 6 C -0.081 4.081 7 C 0.308 3.692 8 O -0.463 6.463 9 N -0.359 5.359 10 C -0.007 4.007 11 C 0.058 3.942 12 O -0.346 6.346 13 C 0.018 3.982 14 N -0.363 5.363 15 C -0.361 4.361 16 H 0.098 0.902 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.806 3.194 20 H -0.193 1.193 21 H -0.219 1.219 22 H -0.218 1.218 23 C 0.001 3.999 24 O -0.109 6.109 25 H 0.143 0.857 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.188 0.812 29 H 0.195 0.805 30 H 0.256 0.744 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.235 0.765 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.551 13.806 -7.718 20.828 hybrid contribution 0.168 -2.238 -0.370 2.275 sum -13.382 11.567 -8.088 19.450 Atomic orbital electron populations 1.20733 0.76479 1.07147 1.07195 1.29078 0.99521 0.78714 0.96731 1.74299 0.96331 1.27102 1.20008 1.74256 1.13073 1.10308 1.17877 1.27490 0.85723 0.91152 0.98900 1.20374 0.89628 1.02725 0.95351 1.20527 0.80202 0.77454 0.91064 1.90767 1.54735 1.52855 1.47917 1.45624 1.27801 1.53177 1.09268 1.21743 0.95462 0.99848 0.83639 1.23096 0.85898 0.91204 0.94000 1.86593 1.36343 1.82390 1.29309 1.22868 0.91288 0.90037 0.94006 1.46059 1.44362 1.16263 1.29630 1.19389 1.14461 0.94088 1.08197 0.90227 1.25566 1.01709 1.00677 0.97870 1.69955 1.42869 1.29603 1.17406 0.85019 0.77957 0.78885 0.77507 1.19328 1.21851 1.21755 1.22803 0.98942 0.85019 0.93124 1.84781 1.17619 1.38760 1.69732 0.85677 0.87139 0.86431 0.81243 0.80487 0.74370 0.90352 0.90805 0.76530 0.95475 0.92789 0.94205 0.92565 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 71.24 0.75 0.27 16 2 C 0.17 3.54 8.48 88.34 0.75 4.29 16 3 N -0.33 -9.09 12.22 -165.50 -2.02 -11.11 16 4 N -0.31 -8.86 12.22 -165.50 -2.02 -10.88 16 5 C 0.18 4.18 6.97 88.34 0.62 4.79 16 6 C -0.04 -0.57 6.33 29.10 0.18 -0.39 16 7 C 0.52 11.70 7.82 87.66 0.69 12.39 16 8 O -0.58 -19.32 16.03 -3.06 -0.05 -19.37 16 9 N -0.71 -14.13 5.34 -463.07 -2.47 -16.60 16 10 C 0.12 3.16 5.28 86.38 0.46 3.61 16 11 C 0.10 3.36 1.52 -10.13 -0.02 3.34 16 12 O -0.54 -17.41 13.51 -148.98 -2.01 -19.42 16 13 C 0.14 6.25 6.92 86.48 0.60 6.85 16 14 N -0.64 -32.12 3.70 -720.13 -2.66 -34.78 16 15 C -0.23 -13.08 10.70 84.04 0.90 -12.18 16 16 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 17 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 18 N -0.95 -55.43 11.38 21.65 0.25 -55.19 16 19 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 C 0.13 4.97 8.34 86.48 0.72 5.69 16 24 O -0.23 -5.22 10.87 -3.71 -0.04 -5.26 16 25 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.17 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.18 1.26 8.14 -2.38 -0.02 1.25 16 30 H 0.42 5.78 7.31 -92.71 -0.68 5.10 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 33 H 0.39 8.24 7.61 -74.06 -0.56 7.68 16 34 H 0.03 1.22 8.03 -2.39 -0.02 1.20 16 35 H 0.05 2.61 7.15 -2.39 -0.02 2.59 16 36 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 37 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 Total: -1.00 -86.33 333.90 -3.02 -89.35 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -0.12 Total: 10.41 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 6.11 Total: 25.46 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -8.93 Total: -128.57 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -2.10 Total: -44.06 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -86.33 -3.02 -89.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672076020.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.257 kcal (2) G-P(sol) polarization free energy of solvation -86.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds