Wall clock time and date at job start Tue Mar 31 2020 03:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47327 * 2 1 4 4 N 1.30254 * 125.61534 * 90.00204 * 3 2 1 5 5 C 1.34483 * 108.70003 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.16500 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.46816 * 275.02593 * 6 5 4 8 8 C 1.34777 * 119.99783 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99673 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99893 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99956 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46951 * 180.02562 * 11 10 8 13 13 O 1.21288 * 120.00499 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99824 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00148 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99695 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99923 * 179.97438 * 15 14 12 18 18 N 1.31405 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99580 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47522 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47136 * 119.99999 * 19 17 15 22 22 H 1.48499 * 109.46785 * 239.99480 * 19 17 15 23 23 C 1.34322 * 107.66912 * 359.97438 * 5 4 3 24 24 O 1.33960 * 125.62340 * 269.97790 * 3 2 1 25 25 H 1.09002 * 109.47215 * 299.99899 * 1 2 3 26 26 H 1.08999 * 109.47023 * 59.99891 * 1 2 3 27 27 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47215 * 240.00101 * 2 1 3 29 29 H 1.09000 * 109.47436 * 120.00765 * 2 1 3 30 30 H 1.08993 * 109.46964 * 35.02215 * 6 5 4 31 31 H 1.08999 * 109.47047 * 155.02376 * 6 5 4 32 32 H 0.96997 * 119.99905 * 359.97438 * 7 6 5 33 33 H 0.96993 * 120.00143 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.46932 * 300.00463 * 11 10 8 35 35 H 1.08998 * 109.46839 * 60.00257 * 11 10 8 36 36 H 0.97005 * 119.99679 * 359.97438 * 14 12 11 37 37 H 0.96997 * 120.00222 * 180.02562 * 18 17 15 38 38 H 1.08003 * 126.44526 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1359 1.0589 5 6 2.7147 3.3488 0.6676 6 6 3.1160 4.4848 1.5729 7 7 1.9246 5.2434 1.9620 8 6 2.0419 6.3122 2.7747 9 8 3.1365 6.6465 3.1851 10 7 0.9460 7.0103 3.1323 11 6 1.0735 8.1718 4.0161 12 6 -0.2884 8.7692 4.2600 13 8 -1.2690 8.2733 3.7467 14 7 -0.4167 9.8545 5.0488 15 6 -1.6556 10.3977 5.2712 16 1 -2.5288 9.9561 4.8140 17 6 -1.7879 11.5164 6.0848 18 7 -0.7255 12.0533 6.6414 19 14 -3.4760 12.2569 6.3872 20 1 -4.4998 11.4724 5.6511 21 1 -3.7775 12.2244 7.8408 22 1 -3.4924 13.6628 5.9095 23 6 2.7214 3.3651 -0.6755 24 8 2.2928 2.1563 -1.0889 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.5997 4.0855 2.4643 31 1 3.8090 5.1413 1.0467 32 1 1.0515 4.9768 1.6342 33 1 0.0728 6.7434 2.8051 34 1 1.5085 7.8598 4.9656 35 1 1.7183 8.9155 3.5479 36 1 0.3676 10.2509 5.4596 37 1 -0.8179 12.8340 7.2096 38 1 3.0140 4.1921 -1.3056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672526065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:31 Heat of formation + Delta-G solvation = -79.293629 kcal Electronic energy + Delta-G solvation = -22364.265758 eV Core-core repulsion = 18628.249062 eV Total energy + Delta-G solvation = -3736.016696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.42120 -41.20626 -40.02639 -36.90150 -36.22006 -35.54398 -35.27430 -34.51002 -33.36681 -31.03518 -29.30079 -27.38034 -26.08839 -25.22382 -22.62989 -22.04271 -21.87616 -21.36080 -20.13302 -19.69079 -18.22701 -17.81464 -17.39740 -17.28653 -16.96892 -16.49339 -16.02318 -15.98466 -15.86683 -15.55779 -15.20078 -15.13782 -14.76681 -14.10630 -13.94967 -13.69366 -13.54846 -13.50484 -13.34943 -12.90826 -12.61172 -12.44314 -12.31548 -12.11080 -12.04660 -11.62334 -11.57751 -11.49226 -10.55683 -10.47625 -10.10186 -9.89430 -9.86858 -8.50760 -6.00871 0.37322 1.24502 1.35423 1.43312 1.57346 1.75692 1.88413 1.90007 2.08791 2.29601 2.90329 3.06771 3.16462 3.34589 3.59993 3.87015 4.18698 4.21461 4.25453 4.38015 4.44138 4.47432 4.55916 4.59568 4.76815 4.88368 4.96817 5.07209 5.16276 5.28876 5.33964 5.34916 5.39428 5.87007 5.93258 6.48543 6.69315 6.96071 7.03975 7.41860 7.49408 7.95044 8.66411 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.028254 B = 0.002284 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.771454 B =12255.000493 C =12948.080388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.026 4.026 3 C 0.191 3.809 4 N -0.504 5.504 5 C -0.057 4.057 6 C 0.229 3.771 7 N -0.729 5.729 8 C 0.709 3.291 9 O -0.628 6.628 10 N -0.724 5.724 11 C 0.142 3.858 12 C 0.434 3.566 13 O -0.625 6.625 14 N -0.560 5.560 15 C -0.336 4.336 16 H 0.086 0.914 17 C -0.012 4.012 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.032 4.032 24 O -0.205 6.205 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.406 0.594 33 H 0.409 0.591 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.544 -20.710 -15.407 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 C -0.017 4.017 4 N -0.234 5.234 5 C -0.176 4.176 6 C 0.105 3.895 7 N -0.386 5.386 8 C 0.408 3.592 9 O -0.509 6.509 10 N -0.381 5.381 11 C 0.013 3.987 12 C 0.221 3.779 13 O -0.513 6.513 14 N -0.195 5.195 15 C -0.465 4.465 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.196 1.196 23 C -0.104 4.104 24 O -0.091 6.091 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.241 0.759 33 H 0.247 0.753 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.234 0.766 37 H 0.089 0.911 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.849 -20.781 -14.643 26.329 hybrid contribution -0.893 0.945 -0.242 1.322 sum 5.956 -19.836 -14.885 25.505 Atomic orbital electron populations 1.21772 0.92638 1.04153 1.02036 1.20311 0.97069 0.82339 1.06686 1.27108 0.98669 0.97890 0.78039 1.70350 1.17271 1.04183 1.31585 1.21647 1.08008 0.94398 0.93522 1.19196 0.86185 0.87623 0.96502 1.44933 1.11508 1.29876 1.52255 1.15823 0.83755 0.80167 0.79416 1.90890 1.26534 1.72106 1.61389 1.44683 1.09659 1.31103 1.52677 1.20606 0.94059 0.88362 0.95643 1.20427 0.90953 0.83195 0.83352 1.90468 1.41129 1.64313 1.55389 1.41842 1.09870 1.25414 1.42381 1.19763 0.86501 1.11063 1.29193 0.89627 1.26139 1.03061 0.96546 0.95488 1.69683 1.30682 1.23293 1.31932 0.84804 0.76890 0.77971 0.78258 1.19467 1.19653 1.19595 1.25542 1.01504 0.87604 0.95732 1.84503 1.63593 1.23101 1.37896 0.93454 0.92382 0.88698 0.86472 0.86968 0.91502 0.88351 0.75899 0.75330 0.89041 0.88684 0.76644 0.91065 0.73069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 71.98 0.71 -0.62 16 2 C -0.03 -0.25 6.56 29.85 0.20 -0.05 16 3 C 0.19 3.28 7.60 88.34 0.67 3.95 16 4 N -0.50 -11.27 11.29 -291.99 -3.30 -14.57 16 5 C -0.06 -1.13 6.48 41.26 0.27 -0.86 16 6 C 0.23 5.01 6.21 85.63 0.53 5.55 16 7 N -0.73 -18.15 5.55 -482.29 -2.68 -20.82 16 8 C 0.71 23.05 8.57 179.06 1.53 24.59 16 9 O -0.63 -24.35 16.34 -3.99 -0.07 -24.41 16 10 N -0.72 -24.50 5.53 -482.30 -2.67 -27.16 16 11 C 0.14 5.28 6.15 85.63 0.53 5.81 16 12 C 0.43 20.21 7.85 87.66 0.69 20.90 16 13 O -0.62 -32.57 15.24 -3.06 -0.05 -32.62 16 14 N -0.56 -28.29 5.29 -306.99 -1.62 -29.92 16 15 C -0.34 -18.60 9.68 84.04 0.81 -17.79 16 16 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 18 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 19 Si 1.00 41.92 29.55 68.60 2.03 43.95 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 23 C -0.03 -0.47 12.08 66.92 0.81 0.34 16 24 O -0.20 -3.35 10.77 -3.70 -0.04 -3.39 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.41 8.88 8.48 -92.71 -0.79 8.10 16 33 H 0.41 13.61 7.45 -92.71 -0.69 12.92 16 34 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.40 19.38 7.90 -92.70 -0.73 18.65 16 37 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.25 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -72.56 341.15 -1.97 -74.53 By element: Atomic # 1 Polarization: 42.37 SS G_CDS: -1.08 Total: 41.29 kcal Atomic # 6 Polarization: 34.46 SS G_CDS: 7.22 Total: 41.67 kcal Atomic # 7 Polarization: -131.04 SS G_CDS: -9.98 Total: -141.03 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -0.15 Total: -60.42 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -72.56 -1.97 -74.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672526065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.760 kcal (2) G-P(sol) polarization free energy of solvation -72.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds